stimfit-0.13.13/0000775000175000017500000000000012275713011010340 500000000000000stimfit-0.13.13/COPYING0000775000175000017500000004313112275677732011343 00000000000000 GNU GENERAL PUBLIC LICENSE Version 2, June 1991 Copyright (C) 1989, 1991 Free Software Foundation, Inc. 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA Everyone is permitted to copy and distribute verbatim copies of this license document, but changing it is not allowed. Preamble The licenses for most software are designed to take away your freedom to share and change it. By contrast, the GNU General Public License is intended to guarantee your freedom to share and change free software--to make sure the software is free for all its users. This General Public License applies to most of the Free Software Foundation's software and to any other program whose authors commit to using it. (Some other Free Software Foundation software is covered by the GNU Library General Public License instead.) You can apply it to your programs, too. When we speak of free software, we are referring to freedom, not price. Our General Public Licenses are designed to make sure that you have the freedom to distribute copies of free software (and charge for this service if you wish), that you receive source code or can get it if you want it, that you can change the software or use pieces of it in new free programs; and that you know you can do these things. To protect your rights, we need to make restrictions that forbid anyone to deny you these rights or to ask you to surrender the rights. These restrictions translate to certain responsibilities for you if you distribute copies of the software, or if you modify it. For example, if you distribute copies of such a program, whether gratis or for a fee, you must give the recipients all the rights that you have. You must make sure that they, too, receive or can get the source code. And you must show them these terms so they know their rights. We protect your rights with two steps: (1) copyright the software, and (2) offer you this license which gives you legal permission to copy, distribute and/or modify the software. Also, for each author's protection and ours, we want to make certain that everyone understands that there is no warranty for this free software. If the software is modified by someone else and passed on, we want its recipients to know that what they have is not the original, so that any problems introduced by others will not reflect on the original authors' reputations. Finally, any free program is threatened constantly by software patents. We wish to avoid the danger that redistributors of a free program will individually obtain patent licenses, in effect making the program proprietary. To prevent this, we have made it clear that any patent must be licensed for everyone's free use or not licensed at all. The precise terms and conditions for copying, distribution and modification follow. GNU GENERAL PUBLIC LICENSE TERMS AND CONDITIONS FOR COPYING, DISTRIBUTION AND MODIFICATION 0. This License applies to any program or other work which contains a notice placed by the copyright holder saying it may be distributed under the terms of this General Public License. The "Program", below, refers to any such program or work, and a "work based on the Program" means either the Program or any derivative work under copyright law: that is to say, a work containing the Program or a portion of it, either verbatim or with modifications and/or translated into another language. (Hereinafter, translation is included without limitation in the term "modification".) Each licensee is addressed as "you". Activities other than copying, distribution and modification are not covered by this License; they are outside its scope. The act of running the Program is not restricted, and the output from the Program is covered only if its contents constitute a work based on the Program (independent of having been made by running the Program). Whether that is true depends on what the Program does. 1. You may copy and distribute verbatim copies of the Program's source code as you receive it, in any medium, provided that you conspicuously and appropriately publish on each copy an appropriate copyright notice and disclaimer of warranty; keep intact all the notices that refer to this License and to the absence of any warranty; and give any other recipients of the Program a copy of this License along with the Program. You may charge a fee for the physical act of transferring a copy, and you may at your option offer warranty protection in exchange for a fee. 2. You may modify your copy or copies of the Program or any portion of it, thus forming a work based on the Program, and copy and distribute such modifications or work under the terms of Section 1 above, provided that you also meet all of these conditions: a) You must cause the modified files to carry prominent notices stating that you changed the files and the date of any change. b) You must cause any work that you distribute or publish, that in whole or in part contains or is derived from the Program or any part thereof, to be licensed as a whole at no charge to all third parties under the terms of this License. c) If the modified program normally reads commands interactively when run, you must cause it, when started running for such interactive use in the most ordinary way, to print or display an announcement including an appropriate copyright notice and a notice that there is no warranty (or else, saying that you provide a warranty) and that users may redistribute the program under these conditions, and telling the user how to view a copy of this License. (Exception: if the Program itself is interactive but does not normally print such an announcement, your work based on the Program is not required to print an announcement.) These requirements apply to the modified work as a whole. If identifiable sections of that work are not derived from the Program, and can be reasonably considered independent and separate works in themselves, then this License, and its terms, do not apply to those sections when you distribute them as separate works. But when you distribute the same sections as part of a whole which is a work based on the Program, the distribution of the whole must be on the terms of this License, whose permissions for other licensees extend to the entire whole, and thus to each and every part regardless of who wrote it. Thus, it is not the intent of this section to claim rights or contest your rights to work written entirely by you; rather, the intent is to exercise the right to control the distribution of derivative or collective works based on the Program. In addition, mere aggregation of another work not based on the Program with the Program (or with a work based on the Program) on a volume of a storage or distribution medium does not bring the other work under the scope of this License. 3. You may copy and distribute the Program (or a work based on it, under Section 2) in object code or executable form under the terms of Sections 1 and 2 above provided that you also do one of the following: a) Accompany it with the complete corresponding machine-readable source code, which must be distributed under the terms of Sections 1 and 2 above on a medium customarily used for software interchange; or, b) Accompany it with a written offer, valid for at least three years, to give any third party, for a charge no more than your cost of physically performing source distribution, a complete machine-readable copy of the corresponding source code, to be distributed under the terms of Sections 1 and 2 above on a medium customarily used for software interchange; or, c) Accompany it with the information you received as to the offer to distribute corresponding source code. (This alternative is allowed only for noncommercial distribution and only if you received the program in object code or executable form with such an offer, in accord with Subsection b above.) The source code for a work means the preferred form of the work for making modifications to it. For an executable work, complete source code means all the source code for all modules it contains, plus any associated interface definition files, plus the scripts used to control compilation and installation of the executable. However, as a special exception, the source code distributed need not include anything that is normally distributed (in either source or binary form) with the major components (compiler, kernel, and so on) of the operating system on which the executable runs, unless that component itself accompanies the executable. If distribution of executable or object code is made by offering access to copy from a designated place, then offering equivalent access to copy the source code from the same place counts as distribution of the source code, even though third parties are not compelled to copy the source along with the object code. 4. You may not copy, modify, sublicense, or distribute the Program except as expressly provided under this License. Any attempt otherwise to copy, modify, sublicense or distribute the Program is void, and will automatically terminate your rights under this License. However, parties who have received copies, or rights, from you under this License will not have their licenses terminated so long as such parties remain in full compliance. 5. You are not required to accept this License, since you have not signed it. However, nothing else grants you permission to modify or distribute the Program or its derivative works. These actions are prohibited by law if you do not accept this License. Therefore, by modifying or distributing the Program (or any work based on the Program), you indicate your acceptance of this License to do so, and all its terms and conditions for copying, distributing or modifying the Program or works based on it. 6. Each time you redistribute the Program (or any work based on the Program), the recipient automatically receives a license from the original licensor to copy, distribute or modify the Program subject to these terms and conditions. You may not impose any further restrictions on the recipients' exercise of the rights granted herein. You are not responsible for enforcing compliance by third parties to this License. 7. If, as a consequence of a court judgment or allegation of patent infringement or for any other reason (not limited to patent issues), conditions are imposed on you (whether by court order, agreement or otherwise) that contradict the conditions of this License, they do not excuse you from the conditions of this License. If you cannot distribute so as to satisfy simultaneously your obligations under this License and any other pertinent obligations, then as a consequence you may not distribute the Program at all. For example, if a patent license would not permit royalty-free redistribution of the Program by all those who receive copies directly or indirectly through you, then the only way you could satisfy both it and this License would be to refrain entirely from distribution of the Program. If any portion of this section is held invalid or unenforceable under any particular circumstance, the balance of the section is intended to apply and the section as a whole is intended to apply in other circumstances. It is not the purpose of this section to induce you to infringe any patents or other property right claims or to contest validity of any such claims; this section has the sole purpose of protecting the integrity of the free software distribution system, which is implemented by public license practices. Many people have made generous contributions to the wide range of software distributed through that system in reliance on consistent application of that system; it is up to the author/donor to decide if he or she is willing to distribute software through any other system and a licensee cannot impose that choice. This section is intended to make thoroughly clear what is believed to be a consequence of the rest of this License. 8. If the distribution and/or use of the Program is restricted in certain countries either by patents or by copyrighted interfaces, the original copyright holder who places the Program under this License may add an explicit geographical distribution limitation excluding those countries, so that distribution is permitted only in or among countries not thus excluded. In such case, this License incorporates the limitation as if written in the body of this License. 9. The Free Software Foundation may publish revised and/or new versions of the General Public License from time to time. Such new versions will be similar in spirit to the present version, but may differ in detail to address new problems or concerns. Each version is given a distinguishing version number. If the Program specifies a version number of this License which applies to it and "any later version", you have the option of following the terms and conditions either of that version or of any later version published by the Free Software Foundation. If the Program does not specify a version number of this License, you may choose any version ever published by the Free Software Foundation. 10. If you wish to incorporate parts of the Program into other free programs whose distribution conditions are different, write to the author to ask for permission. For software which is copyrighted by the Free Software Foundation, write to the Free Software Foundation; we sometimes make exceptions for this. Our decision will be guided by the two goals of preserving the free status of all derivatives of our free software and of promoting the sharing and reuse of software generally. NO WARRANTY 11. BECAUSE THE PROGRAM IS LICENSED FREE OF CHARGE, THERE IS NO WARRANTY FOR THE PROGRAM, TO THE EXTENT PERMITTED BY APPLICABLE LAW. EXCEPT WHEN OTHERWISE STATED IN WRITING THE COPYRIGHT HOLDERS AND/OR OTHER PARTIES PROVIDE THE PROGRAM "AS IS" WITHOUT WARRANTY OF ANY KIND, EITHER EXPRESSED OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE. THE ENTIRE RISK AS TO THE QUALITY AND PERFORMANCE OF THE PROGRAM IS WITH YOU. SHOULD THE PROGRAM PROVE DEFECTIVE, YOU ASSUME THE COST OF ALL NECESSARY SERVICING, REPAIR OR CORRECTION. 12. IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MAY MODIFY AND/OR REDISTRIBUTE THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES, INCLUDING ANY GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING OUT OF THE USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED TO LOSS OF DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY YOU OR THIRD PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER PROGRAMS), EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE POSSIBILITY OF SUCH DAMAGES. END OF TERMS AND CONDITIONS How to Apply These Terms to Your New Programs If you develop a new program, and you want it to be of the greatest possible use to the public, the best way to achieve this is to make it free software which everyone can redistribute and change under these terms. To do so, attach the following notices to the program. It is safest to attach them to the start of each source file to most effectively convey the exclusion of warranty; and each file should have at least the "copyright" line and a pointer to where the full notice is found. Copyright (C) This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA Also add information on how to contact you by electronic and paper mail. If the program is interactive, make it output a short notice like this when it starts in an interactive mode: Gnomovision version 69, Copyright (C) year name of author Gnomovision comes with ABSOLUTELY NO WARRANTY; for details type `show w'. This is free software, and you are welcome to redistribute it under certain conditions; type `show c' for details. The hypothetical commands `show w' and `show c' should show the appropriate parts of the General Public License. Of course, the commands you use may be called something other than `show w' and `show c'; they could even be mouse-clicks or menu items--whatever suits your program. You should also get your employer (if you work as a programmer) or your school, if any, to sign a "copyright disclaimer" for the program, if necessary. Here is a sample; alter the names: Yoyodyne, Inc., hereby disclaims all copyright interest in the program `Gnomovision' (which makes passes at compilers) written by James Hacker. , 1 April 1989 Ty Coon, President of Vice This General Public License does not permit incorporating your program into proprietary programs. If your program is a subroutine library, you may consider it more useful to permit linking proprietary applications with the library. If this is what you want to do, use the GNU Library General Public License instead of this License. stimfit-0.13.13/acsite.m40000775000175000017500000004022612275677732012024 00000000000000 AC_DEFUN([AC_PYTHON_DEVEL],[ # # Allow the use of a (user set) custom python version # AC_ARG_VAR([PYTHON_VERSION],[The installed Python version to use, for example '2.3'. 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You should look at http://www.swig.org" ; false' fi fi AC_SUBST([SWIG_LIB]) ]) AC_DEFUN([SWIG_ENABLE_CXX],[ AC_REQUIRE([AC_PROG_SWIG]) AC_REQUIRE([AC_PROG_CXX]) SWIG="$SWIG -c++" ]) AC_DEFUN([SWIG_PYTHON],[ AC_REQUIRE([AC_PROG_SWIG]) AC_REQUIRE([AC_PYTHON_DEVEL]) test "x$1" != "xno" || swig_shadow=" -noproxy" AC_SUBST([SWIG_PYTHON_OPT],[-python$swig_shadow]) AC_SUBST([SWIG_PYTHON_CPPFLAGS],[$PYTHON_CPPFLAGS]) ]) stimfit-0.13.13/NEWS0000775000175000017500000000000012275677732010773 00000000000000stimfit-0.13.13/m4/0000775000175000017500000000000012275713011010660 500000000000000stimfit-0.13.13/m4/ltoptions.m40000644000175000017500000003007312275704771013113 00000000000000# Helper functions for option handling. -*- Autoconf -*- # # Copyright (C) 2004, 2005, 2007, 2008, 2009 Free Software Foundation, # Inc. # Written by Gary V. Vaughan, 2004 # # This file is free software; the Free Software Foundation gives # unlimited permission to copy and/or distribute it, with or without # modifications, as long as this notice is preserved. # serial 7 ltoptions.m4 # This is to help aclocal find these macros, as it can't see m4_define. AC_DEFUN([LTOPTIONS_VERSION], [m4_if([1])]) # _LT_MANGLE_OPTION(MACRO-NAME, OPTION-NAME) # ------------------------------------------ m4_define([_LT_MANGLE_OPTION], [[_LT_OPTION_]m4_bpatsubst($1__$2, [[^a-zA-Z0-9_]], [_])]) # _LT_SET_OPTION(MACRO-NAME, OPTION-NAME) # --------------------------------------- # Set option OPTION-NAME for macro MACRO-NAME, and if there is a # matching handler defined, dispatch to it. Other OPTION-NAMEs are # saved as a flag. m4_define([_LT_SET_OPTION], [m4_define(_LT_MANGLE_OPTION([$1], [$2]))dnl m4_ifdef(_LT_MANGLE_DEFUN([$1], [$2]), _LT_MANGLE_DEFUN([$1], [$2]), [m4_warning([Unknown $1 option `$2'])])[]dnl ]) # _LT_IF_OPTION(MACRO-NAME, OPTION-NAME, IF-SET, [IF-NOT-SET]) # ------------------------------------------------------------ # Execute IF-SET if OPTION is set, IF-NOT-SET otherwise. m4_define([_LT_IF_OPTION], [m4_ifdef(_LT_MANGLE_OPTION([$1], [$2]), [$3], [$4])]) # _LT_UNLESS_OPTIONS(MACRO-NAME, OPTION-LIST, IF-NOT-SET) # ------------------------------------------------------- # Execute IF-NOT-SET unless all options in OPTION-LIST for MACRO-NAME # are set. m4_define([_LT_UNLESS_OPTIONS], [m4_foreach([_LT_Option], m4_split(m4_normalize([$2])), [m4_ifdef(_LT_MANGLE_OPTION([$1], _LT_Option), [m4_define([$0_found])])])[]dnl m4_ifdef([$0_found], [m4_undefine([$0_found])], [$3 ])[]dnl ]) # _LT_SET_OPTIONS(MACRO-NAME, OPTION-LIST) # ---------------------------------------- # OPTION-LIST is a space-separated list of Libtool options associated # with MACRO-NAME. If any OPTION has a matching handler declared with # LT_OPTION_DEFINE, dispatch to that macro; otherwise complain about # the unknown option and exit. m4_defun([_LT_SET_OPTIONS], [# Set options m4_foreach([_LT_Option], m4_split(m4_normalize([$2])), [_LT_SET_OPTION([$1], _LT_Option)]) m4_if([$1],[LT_INIT],[ dnl dnl Simply set some default values (i.e off) if boolean options were not dnl specified: _LT_UNLESS_OPTIONS([LT_INIT], [dlopen], [enable_dlopen=no ]) _LT_UNLESS_OPTIONS([LT_INIT], [win32-dll], [enable_win32_dll=no ]) dnl dnl If no reference was made to various pairs of opposing options, then dnl we run the default mode handler for the pair. For example, if neither dnl `shared' nor `disable-shared' was passed, we enable building of shared dnl archives by default: _LT_UNLESS_OPTIONS([LT_INIT], [shared disable-shared], [_LT_ENABLE_SHARED]) _LT_UNLESS_OPTIONS([LT_INIT], [static disable-static], [_LT_ENABLE_STATIC]) _LT_UNLESS_OPTIONS([LT_INIT], [pic-only no-pic], [_LT_WITH_PIC]) _LT_UNLESS_OPTIONS([LT_INIT], [fast-install disable-fast-install], [_LT_ENABLE_FAST_INSTALL]) ]) ])# _LT_SET_OPTIONS ## --------------------------------- ## ## Macros to handle LT_INIT options. ## ## --------------------------------- ## # _LT_MANGLE_DEFUN(MACRO-NAME, OPTION-NAME) # ----------------------------------------- m4_define([_LT_MANGLE_DEFUN], [[_LT_OPTION_DEFUN_]m4_bpatsubst(m4_toupper([$1__$2]), [[^A-Z0-9_]], [_])]) # LT_OPTION_DEFINE(MACRO-NAME, OPTION-NAME, CODE) # ----------------------------------------------- m4_define([LT_OPTION_DEFINE], [m4_define(_LT_MANGLE_DEFUN([$1], [$2]), [$3])[]dnl ])# LT_OPTION_DEFINE # dlopen # ------ LT_OPTION_DEFINE([LT_INIT], [dlopen], [enable_dlopen=yes ]) AU_DEFUN([AC_LIBTOOL_DLOPEN], [_LT_SET_OPTION([LT_INIT], [dlopen]) AC_DIAGNOSE([obsolete], [$0: Remove this warning and the call to _LT_SET_OPTION when you put the `dlopen' option into LT_INIT's first parameter.]) ]) dnl aclocal-1.4 backwards compatibility: dnl AC_DEFUN([AC_LIBTOOL_DLOPEN], []) # win32-dll # --------- # Declare package support for building win32 dll's. LT_OPTION_DEFINE([LT_INIT], [win32-dll], [enable_win32_dll=yes case $host in *-*-cygwin* | *-*-mingw* | *-*-pw32* | *-*-cegcc*) AC_CHECK_TOOL(AS, as, false) AC_CHECK_TOOL(DLLTOOL, dlltool, false) AC_CHECK_TOOL(OBJDUMP, objdump, false) ;; esac test -z "$AS" && AS=as _LT_DECL([], [AS], [1], [Assembler program])dnl test -z "$DLLTOOL" && DLLTOOL=dlltool _LT_DECL([], [DLLTOOL], [1], [DLL creation program])dnl test -z "$OBJDUMP" && OBJDUMP=objdump _LT_DECL([], [OBJDUMP], [1], [Object dumper program])dnl ])# win32-dll AU_DEFUN([AC_LIBTOOL_WIN32_DLL], [AC_REQUIRE([AC_CANONICAL_HOST])dnl _LT_SET_OPTION([LT_INIT], [win32-dll]) AC_DIAGNOSE([obsolete], [$0: Remove this warning and the call to _LT_SET_OPTION when you put the `win32-dll' option into LT_INIT's first parameter.]) ]) dnl aclocal-1.4 backwards compatibility: dnl AC_DEFUN([AC_LIBTOOL_WIN32_DLL], []) # _LT_ENABLE_SHARED([DEFAULT]) # ---------------------------- # implement the --enable-shared flag, and supports the `shared' and # `disable-shared' LT_INIT options. # DEFAULT is either `yes' or `no'. If omitted, it defaults to `yes'. m4_define([_LT_ENABLE_SHARED], [m4_define([_LT_ENABLE_SHARED_DEFAULT], [m4_if($1, no, no, yes)])dnl AC_ARG_ENABLE([shared], [AS_HELP_STRING([--enable-shared@<:@=PKGS@:>@], [build shared libraries @<:@default=]_LT_ENABLE_SHARED_DEFAULT[@:>@])], [p=${PACKAGE-default} case $enableval in yes) enable_shared=yes ;; no) enable_shared=no ;; *) enable_shared=no # Look at the argument we got. We use all the common list separators. lt_save_ifs="$IFS"; IFS="${IFS}$PATH_SEPARATOR," for pkg in $enableval; do IFS="$lt_save_ifs" if test "X$pkg" = "X$p"; then enable_shared=yes fi done IFS="$lt_save_ifs" ;; esac], [enable_shared=]_LT_ENABLE_SHARED_DEFAULT) _LT_DECL([build_libtool_libs], [enable_shared], [0], [Whether or not to build shared libraries]) ])# _LT_ENABLE_SHARED LT_OPTION_DEFINE([LT_INIT], [shared], [_LT_ENABLE_SHARED([yes])]) LT_OPTION_DEFINE([LT_INIT], [disable-shared], [_LT_ENABLE_SHARED([no])]) # Old names: AC_DEFUN([AC_ENABLE_SHARED], [_LT_SET_OPTION([LT_INIT], m4_if([$1], [no], [disable-])[shared]) ]) AC_DEFUN([AC_DISABLE_SHARED], [_LT_SET_OPTION([LT_INIT], [disable-shared]) ]) AU_DEFUN([AM_ENABLE_SHARED], [AC_ENABLE_SHARED($@)]) AU_DEFUN([AM_DISABLE_SHARED], [AC_DISABLE_SHARED($@)]) dnl aclocal-1.4 backwards compatibility: dnl AC_DEFUN([AM_ENABLE_SHARED], []) dnl AC_DEFUN([AM_DISABLE_SHARED], []) # _LT_ENABLE_STATIC([DEFAULT]) # ---------------------------- # implement the --enable-static flag, and support the `static' and # `disable-static' LT_INIT options. # DEFAULT is either `yes' or `no'. If omitted, it defaults to `yes'. m4_define([_LT_ENABLE_STATIC], [m4_define([_LT_ENABLE_STATIC_DEFAULT], [m4_if($1, no, no, yes)])dnl AC_ARG_ENABLE([static], [AS_HELP_STRING([--enable-static@<:@=PKGS@:>@], [build static libraries @<:@default=]_LT_ENABLE_STATIC_DEFAULT[@:>@])], [p=${PACKAGE-default} case $enableval in yes) enable_static=yes ;; no) enable_static=no ;; *) enable_static=no # Look at the argument we got. We use all the common list separators. lt_save_ifs="$IFS"; IFS="${IFS}$PATH_SEPARATOR," for pkg in $enableval; do IFS="$lt_save_ifs" if test "X$pkg" = "X$p"; then enable_static=yes fi done IFS="$lt_save_ifs" ;; esac], [enable_static=]_LT_ENABLE_STATIC_DEFAULT) _LT_DECL([build_old_libs], [enable_static], [0], [Whether or not to build static libraries]) ])# _LT_ENABLE_STATIC LT_OPTION_DEFINE([LT_INIT], [static], [_LT_ENABLE_STATIC([yes])]) LT_OPTION_DEFINE([LT_INIT], [disable-static], [_LT_ENABLE_STATIC([no])]) # Old names: AC_DEFUN([AC_ENABLE_STATIC], [_LT_SET_OPTION([LT_INIT], m4_if([$1], [no], [disable-])[static]) ]) AC_DEFUN([AC_DISABLE_STATIC], [_LT_SET_OPTION([LT_INIT], [disable-static]) ]) AU_DEFUN([AM_ENABLE_STATIC], [AC_ENABLE_STATIC($@)]) AU_DEFUN([AM_DISABLE_STATIC], [AC_DISABLE_STATIC($@)]) dnl aclocal-1.4 backwards compatibility: dnl AC_DEFUN([AM_ENABLE_STATIC], []) dnl AC_DEFUN([AM_DISABLE_STATIC], []) # _LT_ENABLE_FAST_INSTALL([DEFAULT]) # ---------------------------------- # implement the --enable-fast-install flag, and support the `fast-install' # and `disable-fast-install' LT_INIT options. # DEFAULT is either `yes' or `no'. If omitted, it defaults to `yes'. m4_define([_LT_ENABLE_FAST_INSTALL], [m4_define([_LT_ENABLE_FAST_INSTALL_DEFAULT], [m4_if($1, no, no, yes)])dnl AC_ARG_ENABLE([fast-install], [AS_HELP_STRING([--enable-fast-install@<:@=PKGS@:>@], [optimize for fast installation @<:@default=]_LT_ENABLE_FAST_INSTALL_DEFAULT[@:>@])], [p=${PACKAGE-default} case $enableval in yes) enable_fast_install=yes ;; no) enable_fast_install=no ;; *) enable_fast_install=no # Look at the argument we got. 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See the # GNU General Public License for more details. # # You should have received a copy of the GNU General Public License # along with GNU Libtool; see the file COPYING. If not, a copy # can be downloaded from http://www.gnu.org/licenses/gpl.html, or # obtained by writing to the Free Software Foundation, Inc., # 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA. ]) # serial 57 LT_INIT # LT_PREREQ(VERSION) # ------------------ # Complain and exit if this libtool version is less that VERSION. m4_defun([LT_PREREQ], [m4_if(m4_version_compare(m4_defn([LT_PACKAGE_VERSION]), [$1]), -1, [m4_default([$3], [m4_fatal([Libtool version $1 or higher is required], 63)])], [$2])]) # _LT_CHECK_BUILDDIR # ------------------ # Complain if the absolute build directory name contains unusual characters m4_defun([_LT_CHECK_BUILDDIR], [case `pwd` in *\ * | *\ *) AC_MSG_WARN([Libtool does not cope well with whitespace in `pwd`]) ;; esac ]) # LT_INIT([OPTIONS]) # ------------------ AC_DEFUN([LT_INIT], [AC_PREREQ([2.58])dnl We use AC_INCLUDES_DEFAULT AC_REQUIRE([AC_CONFIG_AUX_DIR_DEFAULT])dnl AC_BEFORE([$0], [LT_LANG])dnl AC_BEFORE([$0], [LT_OUTPUT])dnl AC_BEFORE([$0], [LTDL_INIT])dnl m4_require([_LT_CHECK_BUILDDIR])dnl dnl Autoconf doesn't catch unexpanded LT_ macros by default: m4_pattern_forbid([^_?LT_[A-Z_]+$])dnl m4_pattern_allow([^(_LT_EOF|LT_DLGLOBAL|LT_DLLAZY_OR_NOW|LT_MULTI_MODULE)$])dnl dnl aclocal doesn't pull ltoptions.m4, ltsugar.m4, or ltversion.m4 dnl unless we require an AC_DEFUNed macro: AC_REQUIRE([LTOPTIONS_VERSION])dnl AC_REQUIRE([LTSUGAR_VERSION])dnl AC_REQUIRE([LTVERSION_VERSION])dnl AC_REQUIRE([LTOBSOLETE_VERSION])dnl m4_require([_LT_PROG_LTMAIN])dnl _LT_SHELL_INIT([SHELL=${CONFIG_SHELL-/bin/sh}]) dnl Parse OPTIONS _LT_SET_OPTIONS([$0], [$1]) # This can be used to rebuild libtool when needed LIBTOOL_DEPS="$ltmain" # Always use our own libtool. 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It appears as though 1/2 is a usable value. lt_cv_sys_max_cmd_len=`expr $lt_cv_sys_max_cmd_len \/ 2` fi ;; esac ]) if test -n $lt_cv_sys_max_cmd_len ; then AC_MSG_RESULT($lt_cv_sys_max_cmd_len) else AC_MSG_RESULT(none) fi max_cmd_len=$lt_cv_sys_max_cmd_len _LT_DECL([], [max_cmd_len], [0], [What is the maximum length of a command?]) ])# LT_CMD_MAX_LEN # Old name: AU_ALIAS([AC_LIBTOOL_SYS_MAX_CMD_LEN], [LT_CMD_MAX_LEN]) dnl aclocal-1.4 backwards compatibility: dnl AC_DEFUN([AC_LIBTOOL_SYS_MAX_CMD_LEN], []) # _LT_HEADER_DLFCN # ---------------- m4_defun([_LT_HEADER_DLFCN], [AC_CHECK_HEADERS([dlfcn.h], [], [], [AC_INCLUDES_DEFAULT])dnl ])# _LT_HEADER_DLFCN # _LT_TRY_DLOPEN_SELF (ACTION-IF-TRUE, ACTION-IF-TRUE-W-USCORE, # ACTION-IF-FALSE, ACTION-IF-CROSS-COMPILING) # ---------------------------------------------------------------- m4_defun([_LT_TRY_DLOPEN_SELF], [m4_require([_LT_HEADER_DLFCN])dnl if test "$cross_compiling" = yes; then : [$4] else lt_dlunknown=0; lt_dlno_uscore=1; lt_dlneed_uscore=2 lt_status=$lt_dlunknown cat > conftest.$ac_ext <<_LT_EOF [#line $LINENO "configure" #include "confdefs.h" #if HAVE_DLFCN_H #include #endif #include #ifdef RTLD_GLOBAL # define LT_DLGLOBAL RTLD_GLOBAL #else # ifdef DL_GLOBAL # define LT_DLGLOBAL DL_GLOBAL # else # define LT_DLGLOBAL 0 # endif #endif /* We may have to define LT_DLLAZY_OR_NOW in the command line if we find out it does not work in some platform. */ #ifndef LT_DLLAZY_OR_NOW # ifdef RTLD_LAZY # define LT_DLLAZY_OR_NOW RTLD_LAZY # else # ifdef DL_LAZY # define LT_DLLAZY_OR_NOW DL_LAZY # else # ifdef RTLD_NOW # define LT_DLLAZY_OR_NOW RTLD_NOW # else # ifdef DL_NOW # define LT_DLLAZY_OR_NOW DL_NOW # else # define LT_DLLAZY_OR_NOW 0 # endif # endif # endif # endif #endif /* When -fvisbility=hidden is used, assume the code has been annotated correspondingly for the symbols needed. */ #if defined(__GNUC__) && (((__GNUC__ == 3) && (__GNUC_MINOR__ >= 3)) || (__GNUC__ > 3)) int fnord () __attribute__((visibility("default"))); #endif int fnord () { return 42; } int main () { void *self = dlopen (0, LT_DLGLOBAL|LT_DLLAZY_OR_NOW); int status = $lt_dlunknown; if (self) { if (dlsym (self,"fnord")) status = $lt_dlno_uscore; else { if (dlsym( self,"_fnord")) status = $lt_dlneed_uscore; else puts (dlerror ()); } /* dlclose (self); */ } else puts (dlerror ()); return status; }] _LT_EOF if AC_TRY_EVAL(ac_link) && test -s conftest${ac_exeext} 2>/dev/null; then (./conftest; exit; ) >&AS_MESSAGE_LOG_FD 2>/dev/null lt_status=$? case x$lt_status in x$lt_dlno_uscore) $1 ;; x$lt_dlneed_uscore) $2 ;; x$lt_dlunknown|x*) $3 ;; esac else : # compilation failed $3 fi fi rm -fr conftest* ])# _LT_TRY_DLOPEN_SELF # LT_SYS_DLOPEN_SELF # ------------------ AC_DEFUN([LT_SYS_DLOPEN_SELF], [m4_require([_LT_HEADER_DLFCN])dnl if test "x$enable_dlopen" != xyes; then enable_dlopen=unknown enable_dlopen_self=unknown enable_dlopen_self_static=unknown else lt_cv_dlopen=no lt_cv_dlopen_libs= case $host_os in beos*) lt_cv_dlopen="load_add_on" lt_cv_dlopen_libs= lt_cv_dlopen_self=yes ;; mingw* | pw32* | cegcc*) lt_cv_dlopen="LoadLibrary" lt_cv_dlopen_libs= ;; cygwin*) lt_cv_dlopen="dlopen" lt_cv_dlopen_libs= ;; darwin*) # if libdl is installed we need to link against it AC_CHECK_LIB([dl], [dlopen], [lt_cv_dlopen="dlopen" lt_cv_dlopen_libs="-ldl"],[ lt_cv_dlopen="dyld" lt_cv_dlopen_libs= lt_cv_dlopen_self=yes ]) ;; *) AC_CHECK_FUNC([shl_load], [lt_cv_dlopen="shl_load"], [AC_CHECK_LIB([dld], [shl_load], [lt_cv_dlopen="shl_load" lt_cv_dlopen_libs="-ldld"], [AC_CHECK_FUNC([dlopen], [lt_cv_dlopen="dlopen"], [AC_CHECK_LIB([dl], [dlopen], [lt_cv_dlopen="dlopen" lt_cv_dlopen_libs="-ldl"], [AC_CHECK_LIB([svld], [dlopen], [lt_cv_dlopen="dlopen" lt_cv_dlopen_libs="-lsvld"], [AC_CHECK_LIB([dld], [dld_link], [lt_cv_dlopen="dld_link" lt_cv_dlopen_libs="-ldld"]) ]) ]) ]) ]) ]) ;; esac if test "x$lt_cv_dlopen" != xno; then enable_dlopen=yes else enable_dlopen=no fi case $lt_cv_dlopen in dlopen) save_CPPFLAGS="$CPPFLAGS" test "x$ac_cv_header_dlfcn_h" = xyes && CPPFLAGS="$CPPFLAGS -DHAVE_DLFCN_H" save_LDFLAGS="$LDFLAGS" wl=$lt_prog_compiler_wl eval LDFLAGS=\"\$LDFLAGS $export_dynamic_flag_spec\" save_LIBS="$LIBS" LIBS="$lt_cv_dlopen_libs $LIBS" AC_CACHE_CHECK([whether a program can dlopen itself], lt_cv_dlopen_self, [dnl _LT_TRY_DLOPEN_SELF( lt_cv_dlopen_self=yes, lt_cv_dlopen_self=yes, lt_cv_dlopen_self=no, lt_cv_dlopen_self=cross) ]) if test "x$lt_cv_dlopen_self" = xyes; then wl=$lt_prog_compiler_wl eval LDFLAGS=\"\$LDFLAGS $lt_prog_compiler_static\" AC_CACHE_CHECK([whether a statically linked program can dlopen itself], lt_cv_dlopen_self_static, [dnl _LT_TRY_DLOPEN_SELF( lt_cv_dlopen_self_static=yes, lt_cv_dlopen_self_static=yes, lt_cv_dlopen_self_static=no, lt_cv_dlopen_self_static=cross) ]) fi CPPFLAGS="$save_CPPFLAGS" LDFLAGS="$save_LDFLAGS" LIBS="$save_LIBS" ;; esac case $lt_cv_dlopen_self in yes|no) enable_dlopen_self=$lt_cv_dlopen_self ;; *) enable_dlopen_self=unknown ;; esac case $lt_cv_dlopen_self_static in yes|no) enable_dlopen_self_static=$lt_cv_dlopen_self_static ;; *) enable_dlopen_self_static=unknown ;; esac fi _LT_DECL([dlopen_support], [enable_dlopen], [0], [Whether dlopen is supported]) _LT_DECL([dlopen_self], [enable_dlopen_self], [0], [Whether dlopen of programs is supported]) _LT_DECL([dlopen_self_static], [enable_dlopen_self_static], [0], [Whether dlopen of statically linked programs is supported]) ])# LT_SYS_DLOPEN_SELF # Old name: AU_ALIAS([AC_LIBTOOL_DLOPEN_SELF], [LT_SYS_DLOPEN_SELF]) dnl aclocal-1.4 backwards compatibility: dnl AC_DEFUN([AC_LIBTOOL_DLOPEN_SELF], []) # _LT_COMPILER_C_O([TAGNAME]) # --------------------------- # Check to see if options -c and -o are simultaneously supported by compiler. # This macro does not hard code the compiler like AC_PROG_CC_C_O. m4_defun([_LT_COMPILER_C_O], [m4_require([_LT_DECL_SED])dnl m4_require([_LT_FILEUTILS_DEFAULTS])dnl m4_require([_LT_TAG_COMPILER])dnl AC_CACHE_CHECK([if $compiler supports -c -o file.$ac_objext], [_LT_TAGVAR(lt_cv_prog_compiler_c_o, $1)], [_LT_TAGVAR(lt_cv_prog_compiler_c_o, $1)=no $RM -r conftest 2>/dev/null mkdir conftest cd conftest mkdir out echo "$lt_simple_compile_test_code" > conftest.$ac_ext lt_compiler_flag="-o out/conftest2.$ac_objext" # Insert the option either (1) after the last *FLAGS variable, or # (2) before a word containing "conftest.", or (3) at the end. # Note that $ac_compile itself does not contain backslashes and begins # with a dollar sign (not a hyphen), so the echo should work correctly. lt_compile=`echo "$ac_compile" | $SED \ -e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \ -e 's: [[^ ]]*conftest\.: $lt_compiler_flag&:; t' \ -e 's:$: $lt_compiler_flag:'` (eval echo "\"\$as_me:$LINENO: $lt_compile\"" >&AS_MESSAGE_LOG_FD) (eval "$lt_compile" 2>out/conftest.err) ac_status=$? cat out/conftest.err >&AS_MESSAGE_LOG_FD echo "$as_me:$LINENO: \$? = $ac_status" >&AS_MESSAGE_LOG_FD if (exit $ac_status) && test -s out/conftest2.$ac_objext then # The compiler can only warn and ignore the option if not recognized # So say no if there are warnings $ECHO "$_lt_compiler_boilerplate" | $SED '/^$/d' > out/conftest.exp $SED '/^$/d; /^ *+/d' out/conftest.err >out/conftest.er2 if test ! -s out/conftest.er2 || diff out/conftest.exp out/conftest.er2 >/dev/null; then _LT_TAGVAR(lt_cv_prog_compiler_c_o, $1)=yes fi fi chmod u+w . 2>&AS_MESSAGE_LOG_FD $RM conftest* # SGI C++ compiler will create directory out/ii_files/ for # template instantiation test -d out/ii_files && $RM out/ii_files/* && rmdir out/ii_files $RM out/* && rmdir out cd .. $RM -r conftest $RM conftest* ]) _LT_TAGDECL([compiler_c_o], [lt_cv_prog_compiler_c_o], [1], [Does compiler simultaneously support -c and -o options?]) ])# _LT_COMPILER_C_O # _LT_COMPILER_FILE_LOCKS([TAGNAME]) # ---------------------------------- # Check to see if we can do hard links to lock some files if needed m4_defun([_LT_COMPILER_FILE_LOCKS], [m4_require([_LT_ENABLE_LOCK])dnl m4_require([_LT_FILEUTILS_DEFAULTS])dnl _LT_COMPILER_C_O([$1]) hard_links="nottested" if test "$_LT_TAGVAR(lt_cv_prog_compiler_c_o, $1)" = no && test "$need_locks" != no; then # do not overwrite the value of need_locks provided by the user AC_MSG_CHECKING([if we can lock with hard links]) hard_links=yes $RM conftest* ln conftest.a conftest.b 2>/dev/null && hard_links=no touch conftest.a ln conftest.a conftest.b 2>&5 || hard_links=no ln conftest.a conftest.b 2>/dev/null && hard_links=no AC_MSG_RESULT([$hard_links]) if test "$hard_links" = no; then AC_MSG_WARN([`$CC' does not support `-c -o', so `make -j' may be unsafe]) need_locks=warn fi else need_locks=no fi _LT_DECL([], [need_locks], [1], [Must we lock files when doing compilation?]) ])# _LT_COMPILER_FILE_LOCKS # _LT_CHECK_OBJDIR # ---------------- m4_defun([_LT_CHECK_OBJDIR], [AC_CACHE_CHECK([for objdir], [lt_cv_objdir], [rm -f .libs 2>/dev/null mkdir .libs 2>/dev/null if test -d .libs; then lt_cv_objdir=.libs else # MS-DOS does not allow filenames that begin with a dot. lt_cv_objdir=_libs fi rmdir .libs 2>/dev/null]) objdir=$lt_cv_objdir _LT_DECL([], [objdir], [0], [The name of the directory that contains temporary libtool files])dnl m4_pattern_allow([LT_OBJDIR])dnl AC_DEFINE_UNQUOTED(LT_OBJDIR, "$lt_cv_objdir/", [Define to the sub-directory in which libtool stores uninstalled libraries.]) ])# _LT_CHECK_OBJDIR # _LT_LINKER_HARDCODE_LIBPATH([TAGNAME]) # -------------------------------------- # Check hardcoding attributes. m4_defun([_LT_LINKER_HARDCODE_LIBPATH], [AC_MSG_CHECKING([how to hardcode library paths into programs]) _LT_TAGVAR(hardcode_action, $1)= if test -n "$_LT_TAGVAR(hardcode_libdir_flag_spec, $1)" || test -n "$_LT_TAGVAR(runpath_var, $1)" || test "X$_LT_TAGVAR(hardcode_automatic, $1)" = "Xyes" ; then # We can hardcode non-existent directories. if test "$_LT_TAGVAR(hardcode_direct, $1)" != no && # If the only mechanism to avoid hardcoding is shlibpath_var, we # have to relink, otherwise we might link with an installed library # when we should be linking with a yet-to-be-installed one ## test "$_LT_TAGVAR(hardcode_shlibpath_var, $1)" != no && test "$_LT_TAGVAR(hardcode_minus_L, $1)" != no; then # Linking always hardcodes the temporary library directory. _LT_TAGVAR(hardcode_action, $1)=relink else # We can link without hardcoding, and we can hardcode nonexisting dirs. _LT_TAGVAR(hardcode_action, $1)=immediate fi else # We cannot hardcode anything, or else we can only hardcode existing # directories. _LT_TAGVAR(hardcode_action, $1)=unsupported fi AC_MSG_RESULT([$_LT_TAGVAR(hardcode_action, $1)]) if test "$_LT_TAGVAR(hardcode_action, $1)" = relink || test "$_LT_TAGVAR(inherit_rpath, $1)" = yes; then # Fast installation is not supported enable_fast_install=no elif test "$shlibpath_overrides_runpath" = yes || test "$enable_shared" = no; 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*) case $LD in # libtool.m4 will add one of these switches to LD *-32|*"-32 "|*-melf32bsmip|*"-melf32bsmip ") libsuff= shlibsuff= libmagic=32-bit;; *-n32|*"-n32 "|*-melf32bmipn32|*"-melf32bmipn32 ") libsuff=32 shlibsuff=N32 libmagic=N32;; *-64|*"-64 "|*-melf64bmip|*"-melf64bmip ") libsuff=64 shlibsuff=64 libmagic=64-bit;; *) libsuff= shlibsuff= libmagic=never-match;; esac ;; esac shlibpath_var=LD_LIBRARY${shlibsuff}_PATH shlibpath_overrides_runpath=no sys_lib_search_path_spec="/usr/lib${libsuff} /lib${libsuff} /usr/local/lib${libsuff}" sys_lib_dlsearch_path_spec="/usr/lib${libsuff} /lib${libsuff}" hardcode_into_libs=yes ;; # No shared lib support for Linux oldld, aout, or coff. linux*oldld* | linux*aout* | linux*coff*) dynamic_linker=no ;; # This must be glibc/ELF. linux* | k*bsd*-gnu | kopensolaris*-gnu) version_type=linux # correct to gnu/linux during the next big refactor need_lib_prefix=no need_version=no library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}' soname_spec='${libname}${release}${shared_ext}$major' finish_cmds='PATH="\$PATH:/sbin" ldconfig -n $libdir' shlibpath_var=LD_LIBRARY_PATH shlibpath_overrides_runpath=no # Some binutils ld are patched to set DT_RUNPATH AC_CACHE_VAL([lt_cv_shlibpath_overrides_runpath], [lt_cv_shlibpath_overrides_runpath=no save_LDFLAGS=$LDFLAGS save_libdir=$libdir eval "libdir=/foo; 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newsos6) version_type=linux # correct to gnu/linux during the next big refactor library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}' shlibpath_var=LD_LIBRARY_PATH shlibpath_overrides_runpath=yes ;; *nto* | *qnx*) version_type=qnx need_lib_prefix=no need_version=no library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}' soname_spec='${libname}${release}${shared_ext}$major' shlibpath_var=LD_LIBRARY_PATH shlibpath_overrides_runpath=no hardcode_into_libs=yes dynamic_linker='ldqnx.so' ;; openbsd*) version_type=sunos sys_lib_dlsearch_path_spec="/usr/lib" need_lib_prefix=no # Some older versions of OpenBSD (3.3 at least) *do* need versioned libs. case $host_os in openbsd3.3 | openbsd3.3.*) need_version=yes ;; *) need_version=no ;; esac library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${shared_ext}$versuffix' finish_cmds='PATH="\$PATH:/sbin" ldconfig -m $libdir' shlibpath_var=LD_LIBRARY_PATH if test -z "`echo __ELF__ | $CC -E - | $GREP __ELF__`" || test "$host_os-$host_cpu" = "openbsd2.8-powerpc"; then case $host_os in openbsd2.[[89]] | openbsd2.[[89]].*) shlibpath_overrides_runpath=no ;; *) shlibpath_overrides_runpath=yes ;; esac else shlibpath_overrides_runpath=yes fi ;; os2*) libname_spec='$name' shrext_cmds=".dll" need_lib_prefix=no library_names_spec='$libname${shared_ext} $libname.a' dynamic_linker='OS/2 ld.exe' shlibpath_var=LIBPATH ;; osf3* | osf4* | osf5*) version_type=osf need_lib_prefix=no need_version=no soname_spec='${libname}${release}${shared_ext}$major' library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}' shlibpath_var=LD_LIBRARY_PATH sys_lib_search_path_spec="/usr/shlib /usr/ccs/lib /usr/lib/cmplrs/cc /usr/lib /usr/local/lib /var/shlib" sys_lib_dlsearch_path_spec="$sys_lib_search_path_spec" ;; rdos*) dynamic_linker=no ;; solaris*) version_type=linux # correct to gnu/linux during the next big refactor need_lib_prefix=no need_version=no library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}' soname_spec='${libname}${release}${shared_ext}$major' shlibpath_var=LD_LIBRARY_PATH shlibpath_overrides_runpath=yes hardcode_into_libs=yes # ldd complains unless libraries are executable postinstall_cmds='chmod +x $lib' ;; sunos4*) version_type=sunos library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${shared_ext}$versuffix' finish_cmds='PATH="\$PATH:/usr/etc" ldconfig $libdir' shlibpath_var=LD_LIBRARY_PATH shlibpath_overrides_runpath=yes if test "$with_gnu_ld" = yes; then need_lib_prefix=no fi need_version=yes ;; sysv4 | sysv4.3*) version_type=linux # correct to gnu/linux during the next big refactor library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}' soname_spec='${libname}${release}${shared_ext}$major' shlibpath_var=LD_LIBRARY_PATH case $host_vendor in sni) shlibpath_overrides_runpath=no need_lib_prefix=no runpath_var=LD_RUN_PATH ;; siemens) need_lib_prefix=no ;; motorola) need_lib_prefix=no need_version=no shlibpath_overrides_runpath=no sys_lib_search_path_spec='/lib /usr/lib /usr/ccs/lib' ;; esac ;; sysv4*MP*) if test -d /usr/nec ;then version_type=linux # correct to gnu/linux during the next big refactor library_names_spec='$libname${shared_ext}.$versuffix $libname${shared_ext}.$major $libname${shared_ext}' soname_spec='$libname${shared_ext}.$major' shlibpath_var=LD_LIBRARY_PATH fi ;; sysv5* | sco3.2v5* | sco5v6* | unixware* | OpenUNIX* | sysv4*uw2*) version_type=freebsd-elf need_lib_prefix=no need_version=no library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext} $libname${shared_ext}' soname_spec='${libname}${release}${shared_ext}$major' shlibpath_var=LD_LIBRARY_PATH shlibpath_overrides_runpath=yes hardcode_into_libs=yes if test "$with_gnu_ld" = yes; then sys_lib_search_path_spec='/usr/local/lib /usr/gnu/lib /usr/ccs/lib /usr/lib /lib' else sys_lib_search_path_spec='/usr/ccs/lib /usr/lib' case $host_os in sco3.2v5*) sys_lib_search_path_spec="$sys_lib_search_path_spec /lib" ;; esac fi sys_lib_dlsearch_path_spec='/usr/lib' ;; tpf*) # TPF is a cross-target only. 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First name is the real one, the rest are links. The last name is the one that the linker finds with -lNAME]]) _LT_DECL([], [soname_spec], [1], [[The coded name of the library, if different from the real name]]) _LT_DECL([], [install_override_mode], [1], [Permission mode override for installation of shared libraries]) _LT_DECL([], [postinstall_cmds], [2], [Command to use after installation of a shared archive]) _LT_DECL([], [postuninstall_cmds], [2], [Command to use after uninstallation of a shared archive]) _LT_DECL([], [finish_cmds], [2], [Commands used to finish a libtool library installation in a directory]) _LT_DECL([], [finish_eval], [1], [[As "finish_cmds", except a single script fragment to be evaled but not shown]]) _LT_DECL([], [hardcode_into_libs], [0], [Whether we should hardcode library paths into libraries]) _LT_DECL([], [sys_lib_search_path_spec], [2], [Compile-time system search path for libraries]) _LT_DECL([], [sys_lib_dlsearch_path_spec], [2], [Run-time system search path for libraries]) ])# _LT_SYS_DYNAMIC_LINKER # _LT_PATH_TOOL_PREFIX(TOOL) # -------------------------- # find a file program which can recognize shared library AC_DEFUN([_LT_PATH_TOOL_PREFIX], [m4_require([_LT_DECL_EGREP])dnl AC_MSG_CHECKING([for $1]) AC_CACHE_VAL(lt_cv_path_MAGIC_CMD, [case $MAGIC_CMD in [[\\/*] | ?:[\\/]*]) lt_cv_path_MAGIC_CMD="$MAGIC_CMD" # Let the user override the test with a path. ;; *) lt_save_MAGIC_CMD="$MAGIC_CMD" lt_save_ifs="$IFS"; IFS=$PATH_SEPARATOR dnl $ac_dummy forces splitting on constant user-supplied paths. dnl POSIX.2 word splitting is done only on the output of word expansions, dnl not every word. 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newos6*) lt_cv_deplibs_check_method='file_magic ELF [[0-9]][[0-9]]*-bit [[ML]]SB (executable|dynamic lib)' lt_cv_file_magic_cmd=/usr/bin/file lt_cv_file_magic_test_file=/usr/lib/libnls.so ;; *nto* | *qnx*) lt_cv_deplibs_check_method=pass_all ;; openbsd*) if test -z "`echo __ELF__ | $CC -E - | $GREP __ELF__`" || test "$host_os-$host_cpu" = "openbsd2.8-powerpc"; then lt_cv_deplibs_check_method='match_pattern /lib[[^/]]+(\.so\.[[0-9]]+\.[[0-9]]+|\.so|_pic\.a)$' else lt_cv_deplibs_check_method='match_pattern /lib[[^/]]+(\.so\.[[0-9]]+\.[[0-9]]+|_pic\.a)$' fi ;; osf3* | osf4* | osf5*) lt_cv_deplibs_check_method=pass_all ;; rdos*) lt_cv_deplibs_check_method=pass_all ;; solaris*) lt_cv_deplibs_check_method=pass_all ;; sysv5* | sco3.2v5* | sco5v6* | unixware* | OpenUNIX* | sysv4*uw2*) lt_cv_deplibs_check_method=pass_all ;; sysv4 | sysv4.3*) case $host_vendor in motorola) lt_cv_deplibs_check_method='file_magic ELF [[0-9]][[0-9]]*-bit [[ML]]SB (shared object|dynamic lib) M[[0-9]][[0-9]]* Version [[0-9]]' lt_cv_file_magic_test_file=`echo /usr/lib/libc.so*` ;; ncr) lt_cv_deplibs_check_method=pass_all ;; sequent) lt_cv_file_magic_cmd='/bin/file' lt_cv_deplibs_check_method='file_magic ELF [[0-9]][[0-9]]*-bit [[LM]]SB (shared object|dynamic lib )' ;; sni) lt_cv_file_magic_cmd='/bin/file' lt_cv_deplibs_check_method="file_magic ELF [[0-9]][[0-9]]*-bit [[LM]]SB dynamic lib" lt_cv_file_magic_test_file=/lib/libc.so ;; siemens) lt_cv_deplibs_check_method=pass_all ;; pc) lt_cv_deplibs_check_method=pass_all ;; esac ;; tpf*) lt_cv_deplibs_check_method=pass_all ;; esac ]) file_magic_glob= want_nocaseglob=no if test "$build" = "$host"; then case $host_os in mingw* | pw32*) if ( shopt | grep nocaseglob ) >/dev/null 2>&1; then want_nocaseglob=yes else file_magic_glob=`echo aAbBcCdDeEfFgGhHiIjJkKlLmMnNoOpPqQrRsStTuUvVwWxXyYzZ | $SED -e "s/\(..\)/s\/[[\1]]\/[[\1]]\/g;/g"` fi ;; esac fi file_magic_cmd=$lt_cv_file_magic_cmd deplibs_check_method=$lt_cv_deplibs_check_method test -z "$deplibs_check_method" && deplibs_check_method=unknown _LT_DECL([], [deplibs_check_method], [1], [Method to check whether dependent libraries are shared objects]) _LT_DECL([], [file_magic_cmd], [1], [Command to use when deplibs_check_method = "file_magic"]) _LT_DECL([], [file_magic_glob], [1], [How to find potential files when deplibs_check_method = "file_magic"]) _LT_DECL([], [want_nocaseglob], [1], [Find potential files using nocaseglob when deplibs_check_method = "file_magic"]) ])# _LT_CHECK_MAGIC_METHOD # LT_PATH_NM # ---------- # find the pathname to a BSD- or MS-compatible name lister AC_DEFUN([LT_PATH_NM], [AC_REQUIRE([AC_PROG_CC])dnl AC_CACHE_CHECK([for BSD- or MS-compatible name lister (nm)], lt_cv_path_NM, [if test -n "$NM"; then # Let the user override the test. lt_cv_path_NM="$NM" else lt_nm_to_check="${ac_tool_prefix}nm" if test -n "$ac_tool_prefix" && test "$build" = "$host"; then lt_nm_to_check="$lt_nm_to_check nm" fi for lt_tmp_nm in $lt_nm_to_check; do lt_save_ifs="$IFS"; IFS=$PATH_SEPARATOR for ac_dir in $PATH /usr/ccs/bin/elf /usr/ccs/bin /usr/ucb /bin; do IFS="$lt_save_ifs" test -z "$ac_dir" && ac_dir=. tmp_nm="$ac_dir/$lt_tmp_nm" if test -f "$tmp_nm" || test -f "$tmp_nm$ac_exeext" ; then # Check to see if the nm accepts a BSD-compat flag. # Adding the `sed 1q' prevents false positives on HP-UX, which says: # nm: unknown option "B" ignored # Tru64's nm complains that /dev/null is an invalid object file case `"$tmp_nm" -B /dev/null 2>&1 | sed '1q'` in */dev/null* | *'Invalid file or object type'*) lt_cv_path_NM="$tmp_nm -B" break ;; *) case `"$tmp_nm" -p /dev/null 2>&1 | sed '1q'` in */dev/null*) lt_cv_path_NM="$tmp_nm -p" break ;; *) lt_cv_path_NM=${lt_cv_path_NM="$tmp_nm"} # keep the first match, but continue # so that we can try to find one that supports BSD flags ;; esac ;; esac fi done IFS="$lt_save_ifs" done : ${lt_cv_path_NM=no} fi]) if test "$lt_cv_path_NM" != "no"; then NM="$lt_cv_path_NM" else # Didn't find any BSD compatible name lister, look for dumpbin. if test -n "$DUMPBIN"; then : # Let the user override the test. else AC_CHECK_TOOLS(DUMPBIN, [dumpbin "link -dump"], :) case `$DUMPBIN -symbols /dev/null 2>&1 | sed '1q'` in *COFF*) DUMPBIN="$DUMPBIN -symbols" ;; *) DUMPBIN=: ;; esac fi AC_SUBST([DUMPBIN]) if test "$DUMPBIN" != ":"; then NM="$DUMPBIN" fi fi test -z "$NM" && NM=nm AC_SUBST([NM]) _LT_DECL([], [NM], [1], [A BSD- or MS-compatible name lister])dnl AC_CACHE_CHECK([the name lister ($NM) interface], [lt_cv_nm_interface], [lt_cv_nm_interface="BSD nm" echo "int some_variable = 0;" > conftest.$ac_ext (eval echo "\"\$as_me:$LINENO: $ac_compile\"" >&AS_MESSAGE_LOG_FD) (eval "$ac_compile" 2>conftest.err) cat conftest.err >&AS_MESSAGE_LOG_FD (eval echo "\"\$as_me:$LINENO: $NM \\\"conftest.$ac_objext\\\"\"" >&AS_MESSAGE_LOG_FD) (eval "$NM \"conftest.$ac_objext\"" 2>conftest.err > conftest.out) cat conftest.err >&AS_MESSAGE_LOG_FD (eval echo "\"\$as_me:$LINENO: output\"" >&AS_MESSAGE_LOG_FD) cat conftest.out >&AS_MESSAGE_LOG_FD if $GREP 'External.*some_variable' conftest.out > /dev/null; then lt_cv_nm_interface="MS dumpbin" fi rm -f conftest*]) ])# LT_PATH_NM # Old names: AU_ALIAS([AM_PROG_NM], [LT_PATH_NM]) AU_ALIAS([AC_PROG_NM], [LT_PATH_NM]) dnl aclocal-1.4 backwards compatibility: dnl AC_DEFUN([AM_PROG_NM], []) dnl AC_DEFUN([AC_PROG_NM], []) # _LT_CHECK_SHAREDLIB_FROM_LINKLIB # -------------------------------- # how to determine the name of the shared library # associated with a specific link library. # -- PORTME fill in with the dynamic library characteristics m4_defun([_LT_CHECK_SHAREDLIB_FROM_LINKLIB], [m4_require([_LT_DECL_EGREP]) m4_require([_LT_DECL_OBJDUMP]) m4_require([_LT_DECL_DLLTOOL]) AC_CACHE_CHECK([how to associate runtime and link libraries], lt_cv_sharedlib_from_linklib_cmd, [lt_cv_sharedlib_from_linklib_cmd='unknown' case $host_os in cygwin* | mingw* | pw32* | cegcc*) # two different shell functions defined in ltmain.sh # decide which to use based on capabilities of $DLLTOOL case `$DLLTOOL --help 2>&1` in *--identify-strict*) lt_cv_sharedlib_from_linklib_cmd=func_cygming_dll_for_implib ;; *) lt_cv_sharedlib_from_linklib_cmd=func_cygming_dll_for_implib_fallback ;; esac ;; *) # fallback: assume linklib IS sharedlib lt_cv_sharedlib_from_linklib_cmd="$ECHO" ;; esac ]) sharedlib_from_linklib_cmd=$lt_cv_sharedlib_from_linklib_cmd test -z "$sharedlib_from_linklib_cmd" && sharedlib_from_linklib_cmd=$ECHO _LT_DECL([], [sharedlib_from_linklib_cmd], [1], [Command to associate shared and link libraries]) ])# _LT_CHECK_SHAREDLIB_FROM_LINKLIB # _LT_PATH_MANIFEST_TOOL # ---------------------- # locate the manifest tool m4_defun([_LT_PATH_MANIFEST_TOOL], [AC_CHECK_TOOL(MANIFEST_TOOL, mt, :) test -z "$MANIFEST_TOOL" && MANIFEST_TOOL=mt AC_CACHE_CHECK([if $MANIFEST_TOOL is a manifest tool], [lt_cv_path_mainfest_tool], [lt_cv_path_mainfest_tool=no echo "$as_me:$LINENO: $MANIFEST_TOOL '-?'" >&AS_MESSAGE_LOG_FD $MANIFEST_TOOL '-?' 2>conftest.err > conftest.out cat conftest.err >&AS_MESSAGE_LOG_FD if $GREP 'Manifest Tool' conftest.out > /dev/null; then lt_cv_path_mainfest_tool=yes fi rm -f conftest*]) if test "x$lt_cv_path_mainfest_tool" != xyes; then MANIFEST_TOOL=: fi _LT_DECL([], [MANIFEST_TOOL], [1], [Manifest tool])dnl ])# _LT_PATH_MANIFEST_TOOL # LT_LIB_M # -------- # check for math library AC_DEFUN([LT_LIB_M], [AC_REQUIRE([AC_CANONICAL_HOST])dnl LIBM= case $host in *-*-beos* | *-*-cegcc* | *-*-cygwin* | *-*-haiku* | *-*-pw32* | *-*-darwin*) # These system don't have libm, or don't need it ;; *-ncr-sysv4.3*) AC_CHECK_LIB(mw, _mwvalidcheckl, LIBM="-lmw") AC_CHECK_LIB(m, cos, LIBM="$LIBM -lm") ;; *) AC_CHECK_LIB(m, cos, LIBM="-lm") ;; esac AC_SUBST([LIBM]) ])# LT_LIB_M # Old name: AU_ALIAS([AC_CHECK_LIBM], [LT_LIB_M]) dnl aclocal-1.4 backwards compatibility: dnl AC_DEFUN([AC_CHECK_LIBM], []) # _LT_COMPILER_NO_RTTI([TAGNAME]) # ------------------------------- m4_defun([_LT_COMPILER_NO_RTTI], [m4_require([_LT_TAG_COMPILER])dnl _LT_TAGVAR(lt_prog_compiler_no_builtin_flag, $1)= if test "$GCC" = yes; then case $cc_basename in nvcc*) _LT_TAGVAR(lt_prog_compiler_no_builtin_flag, $1)=' -Xcompiler -fno-builtin' ;; *) _LT_TAGVAR(lt_prog_compiler_no_builtin_flag, $1)=' -fno-builtin' ;; esac _LT_COMPILER_OPTION([if $compiler supports -fno-rtti -fno-exceptions], lt_cv_prog_compiler_rtti_exceptions, [-fno-rtti -fno-exceptions], [], [_LT_TAGVAR(lt_prog_compiler_no_builtin_flag, $1)="$_LT_TAGVAR(lt_prog_compiler_no_builtin_flag, $1) -fno-rtti -fno-exceptions"]) fi _LT_TAGDECL([no_builtin_flag], [lt_prog_compiler_no_builtin_flag], [1], [Compiler flag to turn off builtin functions]) ])# _LT_COMPILER_NO_RTTI # _LT_CMD_GLOBAL_SYMBOLS # ---------------------- m4_defun([_LT_CMD_GLOBAL_SYMBOLS], [AC_REQUIRE([AC_CANONICAL_HOST])dnl AC_REQUIRE([AC_PROG_CC])dnl AC_REQUIRE([AC_PROG_AWK])dnl AC_REQUIRE([LT_PATH_NM])dnl AC_REQUIRE([LT_PATH_LD])dnl m4_require([_LT_DECL_SED])dnl m4_require([_LT_DECL_EGREP])dnl m4_require([_LT_TAG_COMPILER])dnl # Check for command to grab the raw symbol name followed by C symbol from nm. AC_MSG_CHECKING([command to parse $NM output from $compiler object]) AC_CACHE_VAL([lt_cv_sys_global_symbol_pipe], [ # These are sane defaults that work on at least a few old systems. # [They come from Ultrix. What could be older than Ultrix?!! ;)] # Character class describing NM global symbol codes. symcode='[[BCDEGRST]]' # Regexp to match symbols that can be accessed directly from C. sympat='\([[_A-Za-z]][[_A-Za-z0-9]]*\)' # Define system-specific variables. case $host_os in aix*) symcode='[[BCDT]]' ;; cygwin* | mingw* | pw32* | cegcc*) symcode='[[ABCDGISTW]]' ;; hpux*) if test "$host_cpu" = ia64; then symcode='[[ABCDEGRST]]' fi ;; irix* | nonstopux*) symcode='[[BCDEGRST]]' ;; osf*) symcode='[[BCDEGQRST]]' ;; solaris*) symcode='[[BDRT]]' ;; sco3.2v5*) symcode='[[DT]]' ;; sysv4.2uw2*) symcode='[[DT]]' ;; sysv5* | sco5v6* | unixware* | OpenUNIX*) symcode='[[ABDT]]' ;; sysv4) symcode='[[DFNSTU]]' ;; esac # If we're using GNU nm, then use its standard symbol codes. case `$NM -V 2>&1` in *GNU* | *'with BFD'*) symcode='[[ABCDGIRSTW]]' ;; esac # Transform an extracted symbol line into a proper C declaration. # Some systems (esp. on ia64) link data and code symbols differently, # so use this general approach. lt_cv_sys_global_symbol_to_cdecl="sed -n -e 's/^T .* \(.*\)$/extern int \1();/p' -e 's/^$symcode* .* \(.*\)$/extern char \1;/p'" # Transform an extracted symbol line into symbol name and symbol address lt_cv_sys_global_symbol_to_c_name_address="sed -n -e 's/^: \([[^ ]]*\)[[ ]]*$/ {\\\"\1\\\", (void *) 0},/p' -e 's/^$symcode* \([[^ ]]*\) \([[^ ]]*\)$/ {\"\2\", (void *) \&\2},/p'" lt_cv_sys_global_symbol_to_c_name_address_lib_prefix="sed -n -e 's/^: \([[^ ]]*\)[[ ]]*$/ {\\\"\1\\\", (void *) 0},/p' -e 's/^$symcode* \([[^ ]]*\) \(lib[[^ ]]*\)$/ {\"\2\", (void *) \&\2},/p' -e 's/^$symcode* \([[^ ]]*\) \([[^ ]]*\)$/ {\"lib\2\", (void *) \&\2},/p'" # Handle CRLF in mingw tool chain opt_cr= case $build_os in mingw*) opt_cr=`$ECHO 'x\{0,1\}' | tr x '\015'` # option cr in regexp ;; esac # Try without a prefix underscore, then with it. for ac_symprfx in "" "_"; do # Transform symcode, sympat, and symprfx into a raw symbol and a C symbol. symxfrm="\\1 $ac_symprfx\\2 \\2" # Write the raw and C identifiers. if test "$lt_cv_nm_interface" = "MS dumpbin"; then # Fake it for dumpbin and say T for any non-static function # and D for any global variable. # Also find C++ and __fastcall symbols from MSVC++, # which start with @ or ?. lt_cv_sys_global_symbol_pipe="$AWK ['"\ " {last_section=section; section=\$ 3};"\ " /^COFF SYMBOL TABLE/{for(i in hide) delete hide[i]};"\ " /Section length .*#relocs.*(pick any)/{hide[last_section]=1};"\ " \$ 0!~/External *\|/{next};"\ " / 0+ UNDEF /{next}; / UNDEF \([^|]\)*()/{next};"\ " {if(hide[section]) next};"\ " {f=0}; \$ 0~/\(\).*\|/{f=1}; {printf f ? \"T \" : \"D \"};"\ " {split(\$ 0, a, /\||\r/); split(a[2], s)};"\ " s[1]~/^[@?]/{print s[1], s[1]; next};"\ " s[1]~prfx {split(s[1],t,\"@\"); print t[1], substr(t[1],length(prfx))}"\ " ' prfx=^$ac_symprfx]" else lt_cv_sys_global_symbol_pipe="sed -n -e 's/^.*[[ ]]\($symcode$symcode*\)[[ ]][[ ]]*$ac_symprfx$sympat$opt_cr$/$symxfrm/p'" fi lt_cv_sys_global_symbol_pipe="$lt_cv_sys_global_symbol_pipe | sed '/ __gnu_lto/d'" # Check to see that the pipe works correctly. pipe_works=no rm -f conftest* cat > conftest.$ac_ext <<_LT_EOF #ifdef __cplusplus extern "C" { #endif char nm_test_var; void nm_test_func(void); void nm_test_func(void){} #ifdef __cplusplus } #endif int main(){nm_test_var='a';nm_test_func();return(0);} _LT_EOF if AC_TRY_EVAL(ac_compile); then # Now try to grab the symbols. nlist=conftest.nm if AC_TRY_EVAL(NM conftest.$ac_objext \| "$lt_cv_sys_global_symbol_pipe" \> $nlist) && test -s "$nlist"; then # Try sorting and uniquifying the output. if sort "$nlist" | uniq > "$nlist"T; then mv -f "$nlist"T "$nlist" else rm -f "$nlist"T fi # Make sure that we snagged all the symbols we need. if $GREP ' nm_test_var$' "$nlist" >/dev/null; then if $GREP ' nm_test_func$' "$nlist" >/dev/null; then cat <<_LT_EOF > conftest.$ac_ext /* Keep this code in sync between libtool.m4, ltmain, lt_system.h, and tests. */ #if defined(_WIN32) || defined(__CYGWIN__) || defined(_WIN32_WCE) /* DATA imports from DLLs on WIN32 con't be const, because runtime relocations are performed -- see ld's documentation on pseudo-relocs. */ # define LT@&t@_DLSYM_CONST #elif defined(__osf__) /* This system does not cope well with relocations in const data. */ # define LT@&t@_DLSYM_CONST #else # define LT@&t@_DLSYM_CONST const #endif #ifdef __cplusplus extern "C" { #endif _LT_EOF # Now generate the symbol file. eval "$lt_cv_sys_global_symbol_to_cdecl"' < "$nlist" | $GREP -v main >> conftest.$ac_ext' cat <<_LT_EOF >> conftest.$ac_ext /* The mapping between symbol names and symbols. */ LT@&t@_DLSYM_CONST struct { const char *name; void *address; } lt__PROGRAM__LTX_preloaded_symbols[[]] = { { "@PROGRAM@", (void *) 0 }, _LT_EOF $SED "s/^$symcode$symcode* \(.*\) \(.*\)$/ {\"\2\", (void *) \&\2},/" < "$nlist" | $GREP -v main >> conftest.$ac_ext cat <<\_LT_EOF >> conftest.$ac_ext {0, (void *) 0} }; /* This works around a problem in FreeBSD linker */ #ifdef FREEBSD_WORKAROUND static const void *lt_preloaded_setup() { return lt__PROGRAM__LTX_preloaded_symbols; } #endif #ifdef __cplusplus } #endif _LT_EOF # Now try linking the two files. mv conftest.$ac_objext conftstm.$ac_objext lt_globsym_save_LIBS=$LIBS lt_globsym_save_CFLAGS=$CFLAGS LIBS="conftstm.$ac_objext" CFLAGS="$CFLAGS$_LT_TAGVAR(lt_prog_compiler_no_builtin_flag, $1)" if AC_TRY_EVAL(ac_link) && test -s conftest${ac_exeext}; then pipe_works=yes fi LIBS=$lt_globsym_save_LIBS CFLAGS=$lt_globsym_save_CFLAGS else echo "cannot find nm_test_func in $nlist" >&AS_MESSAGE_LOG_FD fi else echo "cannot find nm_test_var in $nlist" >&AS_MESSAGE_LOG_FD fi else echo "cannot run $lt_cv_sys_global_symbol_pipe" >&AS_MESSAGE_LOG_FD fi else echo "$progname: failed program was:" >&AS_MESSAGE_LOG_FD cat conftest.$ac_ext >&5 fi rm -rf conftest* conftst* # Do not use the global_symbol_pipe unless it works. if test "$pipe_works" = yes; then break else lt_cv_sys_global_symbol_pipe= fi done ]) if test -z "$lt_cv_sys_global_symbol_pipe"; then lt_cv_sys_global_symbol_to_cdecl= fi if test -z "$lt_cv_sys_global_symbol_pipe$lt_cv_sys_global_symbol_to_cdecl"; then AC_MSG_RESULT(failed) else AC_MSG_RESULT(ok) fi # Response file support. if test "$lt_cv_nm_interface" = "MS dumpbin"; then nm_file_list_spec='@' elif $NM --help 2>/dev/null | grep '[[@]]FILE' >/dev/null; then nm_file_list_spec='@' fi _LT_DECL([global_symbol_pipe], [lt_cv_sys_global_symbol_pipe], [1], [Take the output of nm and produce a listing of raw symbols and C names]) _LT_DECL([global_symbol_to_cdecl], [lt_cv_sys_global_symbol_to_cdecl], [1], [Transform the output of nm in a proper C declaration]) _LT_DECL([global_symbol_to_c_name_address], [lt_cv_sys_global_symbol_to_c_name_address], [1], [Transform the output of nm in a C name address pair]) _LT_DECL([global_symbol_to_c_name_address_lib_prefix], [lt_cv_sys_global_symbol_to_c_name_address_lib_prefix], [1], [Transform the output of nm in a C name address pair when lib prefix is needed]) _LT_DECL([], [nm_file_list_spec], [1], [Specify filename containing input files for $NM]) ]) # _LT_CMD_GLOBAL_SYMBOLS # _LT_COMPILER_PIC([TAGNAME]) # --------------------------- m4_defun([_LT_COMPILER_PIC], [m4_require([_LT_TAG_COMPILER])dnl _LT_TAGVAR(lt_prog_compiler_wl, $1)= _LT_TAGVAR(lt_prog_compiler_pic, $1)= _LT_TAGVAR(lt_prog_compiler_static, $1)= m4_if([$1], [CXX], [ # C++ specific cases for pic, static, wl, etc. if test "$GXX" = yes; then _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,' _LT_TAGVAR(lt_prog_compiler_static, $1)='-static' case $host_os in aix*) # All AIX code is PIC. if test "$host_cpu" = ia64; then # AIX 5 now supports IA64 processor _LT_TAGVAR(lt_prog_compiler_static, $1)='-Bstatic' fi ;; amigaos*) case $host_cpu in powerpc) # see comment about AmigaOS4 .so support _LT_TAGVAR(lt_prog_compiler_pic, $1)='-fPIC' ;; m68k) # FIXME: we need at least 68020 code to build shared libraries, but # adding the `-m68020' flag to GCC prevents building anything better, # like `-m68040'. _LT_TAGVAR(lt_prog_compiler_pic, $1)='-m68020 -resident32 -malways-restore-a4' ;; esac ;; beos* | irix5* | irix6* | nonstopux* | osf3* | osf4* | osf5*) # PIC is the default for these OSes. ;; mingw* | cygwin* | os2* | pw32* | cegcc*) # This hack is so that the source file can tell whether it is being # built for inclusion in a dll (and should export symbols for example). # Although the cygwin gcc ignores -fPIC, still need this for old-style # (--disable-auto-import) libraries m4_if([$1], [GCJ], [], [_LT_TAGVAR(lt_prog_compiler_pic, $1)='-DDLL_EXPORT']) ;; darwin* | rhapsody*) # PIC is the default on this platform # Common symbols not allowed in MH_DYLIB files _LT_TAGVAR(lt_prog_compiler_pic, $1)='-fno-common' ;; *djgpp*) # DJGPP does not support shared libraries at all _LT_TAGVAR(lt_prog_compiler_pic, $1)= ;; haiku*) # PIC is the default for Haiku. # The "-static" flag exists, but is broken. _LT_TAGVAR(lt_prog_compiler_static, $1)= ;; interix[[3-9]]*) # Interix 3.x gcc -fpic/-fPIC options generate broken code. # Instead, we relocate shared libraries at runtime. ;; sysv4*MP*) if test -d /usr/nec; then _LT_TAGVAR(lt_prog_compiler_pic, $1)=-Kconform_pic fi ;; hpux*) # PIC is the default for 64-bit PA HP-UX, but not for 32-bit # PA HP-UX. On IA64 HP-UX, PIC is the default but the pic flag # sets the default TLS model and affects inlining. case $host_cpu in hppa*64*) ;; *) _LT_TAGVAR(lt_prog_compiler_pic, $1)='-fPIC' ;; esac ;; *qnx* | *nto*) # QNX uses GNU C++, but need to define -shared option too, otherwise # it will coredump. _LT_TAGVAR(lt_prog_compiler_pic, $1)='-fPIC -shared' ;; *) _LT_TAGVAR(lt_prog_compiler_pic, $1)='-fPIC' ;; esac else case $host_os in aix[[4-9]]*) # All AIX code is PIC. if test "$host_cpu" = ia64; then # AIX 5 now supports IA64 processor _LT_TAGVAR(lt_prog_compiler_static, $1)='-Bstatic' else _LT_TAGVAR(lt_prog_compiler_static, $1)='-bnso -bI:/lib/syscalls.exp' fi ;; chorus*) case $cc_basename in cxch68*) # Green Hills C++ Compiler # _LT_TAGVAR(lt_prog_compiler_static, $1)="--no_auto_instantiation -u __main -u __premain -u _abort -r $COOL_DIR/lib/libOrb.a $MVME_DIR/lib/CC/libC.a $MVME_DIR/lib/classix/libcx.s.a" ;; esac ;; mingw* | cygwin* | os2* | pw32* | cegcc*) # This hack is so that the source file can tell whether it is being # built for inclusion in a dll (and should export symbols for example). m4_if([$1], [GCJ], [], [_LT_TAGVAR(lt_prog_compiler_pic, $1)='-DDLL_EXPORT']) ;; dgux*) case $cc_basename in ec++*) _LT_TAGVAR(lt_prog_compiler_pic, $1)='-KPIC' ;; ghcx*) # Green Hills C++ Compiler _LT_TAGVAR(lt_prog_compiler_pic, $1)='-pic' ;; *) ;; esac ;; freebsd* | dragonfly*) # FreeBSD uses GNU C++ ;; hpux9* | hpux10* | hpux11*) case $cc_basename in CC*) _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,' _LT_TAGVAR(lt_prog_compiler_static, $1)='${wl}-a ${wl}archive' if test "$host_cpu" != ia64; then _LT_TAGVAR(lt_prog_compiler_pic, $1)='+Z' fi ;; aCC*) _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,' _LT_TAGVAR(lt_prog_compiler_static, $1)='${wl}-a ${wl}archive' case $host_cpu in hppa*64*|ia64*) # +Z the default ;; *) _LT_TAGVAR(lt_prog_compiler_pic, $1)='+Z' ;; esac ;; *) ;; esac ;; interix*) # This is c89, which is MS Visual C++ (no shared libs) # Anyone wants to do a port? ;; irix5* | irix6* | nonstopux*) case $cc_basename in CC*) _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,' _LT_TAGVAR(lt_prog_compiler_static, $1)='-non_shared' # CC pic flag -KPIC is the default. ;; *) ;; esac ;; linux* | k*bsd*-gnu | kopensolaris*-gnu) case $cc_basename in KCC*) # KAI C++ Compiler _LT_TAGVAR(lt_prog_compiler_wl, $1)='--backend -Wl,' _LT_TAGVAR(lt_prog_compiler_pic, $1)='-fPIC' ;; ecpc* ) # old Intel C++ for x86_64 which still supported -KPIC. _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,' _LT_TAGVAR(lt_prog_compiler_pic, $1)='-KPIC' _LT_TAGVAR(lt_prog_compiler_static, $1)='-static' ;; icpc* ) # Intel C++, used to be incompatible with GCC. # ICC 10 doesn't accept -KPIC any more. _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,' _LT_TAGVAR(lt_prog_compiler_pic, $1)='-fPIC' _LT_TAGVAR(lt_prog_compiler_static, $1)='-static' ;; pgCC* | pgcpp*) # Portland Group C++ compiler _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,' _LT_TAGVAR(lt_prog_compiler_pic, $1)='-fpic' _LT_TAGVAR(lt_prog_compiler_static, $1)='-Bstatic' ;; cxx*) # Compaq C++ # Make sure the PIC flag is empty. It appears that all Alpha # Linux and Compaq Tru64 Unix objects are PIC. _LT_TAGVAR(lt_prog_compiler_pic, $1)= _LT_TAGVAR(lt_prog_compiler_static, $1)='-non_shared' ;; xlc* | xlC* | bgxl[[cC]]* | mpixl[[cC]]*) # IBM XL 8.0, 9.0 on PPC and BlueGene _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,' _LT_TAGVAR(lt_prog_compiler_pic, $1)='-qpic' _LT_TAGVAR(lt_prog_compiler_static, $1)='-qstaticlink' ;; *) case `$CC -V 2>&1 | sed 5q` in *Sun\ C*) # Sun C++ 5.9 _LT_TAGVAR(lt_prog_compiler_pic, $1)='-KPIC' _LT_TAGVAR(lt_prog_compiler_static, $1)='-Bstatic' _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Qoption ld ' ;; esac ;; esac ;; lynxos*) ;; m88k*) ;; mvs*) case $cc_basename in cxx*) _LT_TAGVAR(lt_prog_compiler_pic, $1)='-W c,exportall' ;; *) ;; esac ;; netbsd* | netbsdelf*-gnu) ;; *qnx* | *nto*) # QNX uses GNU C++, but need to define -shared option too, otherwise # it will coredump. _LT_TAGVAR(lt_prog_compiler_pic, $1)='-fPIC -shared' ;; osf3* | osf4* | osf5*) case $cc_basename in KCC*) _LT_TAGVAR(lt_prog_compiler_wl, $1)='--backend -Wl,' ;; RCC*) # Rational C++ 2.4.1 _LT_TAGVAR(lt_prog_compiler_pic, $1)='-pic' ;; cxx*) # Digital/Compaq C++ _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,' # Make sure the PIC flag is empty. It appears that all Alpha # Linux and Compaq Tru64 Unix objects are PIC. _LT_TAGVAR(lt_prog_compiler_pic, $1)= _LT_TAGVAR(lt_prog_compiler_static, $1)='-non_shared' ;; *) ;; esac ;; psos*) ;; solaris*) case $cc_basename in CC* | sunCC*) # Sun C++ 4.2, 5.x and Centerline C++ _LT_TAGVAR(lt_prog_compiler_pic, $1)='-KPIC' _LT_TAGVAR(lt_prog_compiler_static, $1)='-Bstatic' _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Qoption ld ' ;; gcx*) # Green Hills C++ Compiler _LT_TAGVAR(lt_prog_compiler_pic, $1)='-PIC' ;; *) ;; esac ;; sunos4*) case $cc_basename in CC*) # Sun C++ 4.x _LT_TAGVAR(lt_prog_compiler_pic, $1)='-pic' _LT_TAGVAR(lt_prog_compiler_static, $1)='-Bstatic' ;; lcc*) # Lucid _LT_TAGVAR(lt_prog_compiler_pic, $1)='-pic' ;; *) ;; esac ;; sysv5* | unixware* | sco3.2v5* | sco5v6* | OpenUNIX*) case $cc_basename in CC*) _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,' _LT_TAGVAR(lt_prog_compiler_pic, $1)='-KPIC' _LT_TAGVAR(lt_prog_compiler_static, $1)='-Bstatic' ;; esac ;; tandem*) case $cc_basename in NCC*) # NonStop-UX NCC 3.20 _LT_TAGVAR(lt_prog_compiler_pic, $1)='-KPIC' ;; *) ;; esac ;; vxworks*) ;; *) _LT_TAGVAR(lt_prog_compiler_can_build_shared, $1)=no ;; esac fi ], [ if test "$GCC" = yes; then _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,' _LT_TAGVAR(lt_prog_compiler_static, $1)='-static' case $host_os in aix*) # All AIX code is PIC. if test "$host_cpu" = ia64; then # AIX 5 now supports IA64 processor _LT_TAGVAR(lt_prog_compiler_static, $1)='-Bstatic' fi ;; amigaos*) case $host_cpu in powerpc) # see comment about AmigaOS4 .so support _LT_TAGVAR(lt_prog_compiler_pic, $1)='-fPIC' ;; m68k) # FIXME: we need at least 68020 code to build shared libraries, but # adding the `-m68020' flag to GCC prevents building anything better, # like `-m68040'. _LT_TAGVAR(lt_prog_compiler_pic, $1)='-m68020 -resident32 -malways-restore-a4' ;; esac ;; beos* | irix5* | irix6* | nonstopux* | osf3* | osf4* | osf5*) # PIC is the default for these OSes. ;; mingw* | cygwin* | pw32* | os2* | cegcc*) # This hack is so that the source file can tell whether it is being # built for inclusion in a dll (and should export symbols for example). # Although the cygwin gcc ignores -fPIC, still need this for old-style # (--disable-auto-import) libraries m4_if([$1], [GCJ], [], [_LT_TAGVAR(lt_prog_compiler_pic, $1)='-DDLL_EXPORT']) ;; darwin* | rhapsody*) # PIC is the default on this platform # Common symbols not allowed in MH_DYLIB files _LT_TAGVAR(lt_prog_compiler_pic, $1)='-fno-common' ;; haiku*) # PIC is the default for Haiku. # The "-static" flag exists, but is broken. _LT_TAGVAR(lt_prog_compiler_static, $1)= ;; hpux*) # PIC is the default for 64-bit PA HP-UX, but not for 32-bit # PA HP-UX. On IA64 HP-UX, PIC is the default but the pic flag # sets the default TLS model and affects inlining. case $host_cpu in hppa*64*) # +Z the default ;; *) _LT_TAGVAR(lt_prog_compiler_pic, $1)='-fPIC' ;; esac ;; interix[[3-9]]*) # Interix 3.x gcc -fpic/-fPIC options generate broken code. # Instead, we relocate shared libraries at runtime. ;; msdosdjgpp*) # Just because we use GCC doesn't mean we suddenly get shared libraries # on systems that don't support them. _LT_TAGVAR(lt_prog_compiler_can_build_shared, $1)=no enable_shared=no ;; *nto* | *qnx*) # QNX uses GNU C++, but need to define -shared option too, otherwise # it will coredump. _LT_TAGVAR(lt_prog_compiler_pic, $1)='-fPIC -shared' ;; sysv4*MP*) if test -d /usr/nec; then _LT_TAGVAR(lt_prog_compiler_pic, $1)=-Kconform_pic fi ;; *) _LT_TAGVAR(lt_prog_compiler_pic, $1)='-fPIC' ;; esac case $cc_basename in nvcc*) # Cuda Compiler Driver 2.2 _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Xlinker ' if test -n "$_LT_TAGVAR(lt_prog_compiler_pic, $1)"; then _LT_TAGVAR(lt_prog_compiler_pic, $1)="-Xcompiler $_LT_TAGVAR(lt_prog_compiler_pic, $1)" fi ;; esac else # PORTME Check for flag to pass linker flags through the system compiler. case $host_os in aix*) _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,' if test "$host_cpu" = ia64; then # AIX 5 now supports IA64 processor _LT_TAGVAR(lt_prog_compiler_static, $1)='-Bstatic' else _LT_TAGVAR(lt_prog_compiler_static, $1)='-bnso -bI:/lib/syscalls.exp' fi ;; mingw* | cygwin* | pw32* | os2* | cegcc*) # This hack is so that the source file can tell whether it is being # built for inclusion in a dll (and should export symbols for example). m4_if([$1], [GCJ], [], [_LT_TAGVAR(lt_prog_compiler_pic, $1)='-DDLL_EXPORT']) ;; hpux9* | hpux10* | hpux11*) _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,' # PIC is the default for IA64 HP-UX and 64-bit HP-UX, but # not for PA HP-UX. case $host_cpu in hppa*64*|ia64*) # +Z the default ;; *) _LT_TAGVAR(lt_prog_compiler_pic, $1)='+Z' ;; esac # Is there a better lt_prog_compiler_static that works with the bundled CC? _LT_TAGVAR(lt_prog_compiler_static, $1)='${wl}-a ${wl}archive' ;; irix5* | irix6* | nonstopux*) _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,' # PIC (with -KPIC) is the default. _LT_TAGVAR(lt_prog_compiler_static, $1)='-non_shared' ;; linux* | k*bsd*-gnu | kopensolaris*-gnu) case $cc_basename in # old Intel for x86_64 which still supported -KPIC. ecc*) _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,' _LT_TAGVAR(lt_prog_compiler_pic, $1)='-KPIC' _LT_TAGVAR(lt_prog_compiler_static, $1)='-static' ;; # icc used to be incompatible with GCC. # ICC 10 doesn't accept -KPIC any more. icc* | ifort*) _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,' _LT_TAGVAR(lt_prog_compiler_pic, $1)='-fPIC' _LT_TAGVAR(lt_prog_compiler_static, $1)='-static' ;; # Lahey Fortran 8.1. lf95*) _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,' _LT_TAGVAR(lt_prog_compiler_pic, $1)='--shared' _LT_TAGVAR(lt_prog_compiler_static, $1)='--static' ;; nagfor*) # NAG Fortran compiler _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,-Wl,,' _LT_TAGVAR(lt_prog_compiler_pic, $1)='-PIC' _LT_TAGVAR(lt_prog_compiler_static, $1)='-Bstatic' ;; pgcc* | pgf77* | pgf90* | pgf95* | pgfortran*) # Portland Group compilers (*not* the Pentium gcc compiler, # which looks to be a dead project) _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,' _LT_TAGVAR(lt_prog_compiler_pic, $1)='-fpic' _LT_TAGVAR(lt_prog_compiler_static, $1)='-Bstatic' ;; ccc*) _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,' # All Alpha code is PIC. _LT_TAGVAR(lt_prog_compiler_static, $1)='-non_shared' ;; xl* | bgxl* | bgf* | mpixl*) # IBM XL C 8.0/Fortran 10.1, 11.1 on PPC and BlueGene _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,' _LT_TAGVAR(lt_prog_compiler_pic, $1)='-qpic' _LT_TAGVAR(lt_prog_compiler_static, $1)='-qstaticlink' ;; *) case `$CC -V 2>&1 | sed 5q` in *Sun\ Ceres\ Fortran* | *Sun*Fortran*\ [[1-7]].* | *Sun*Fortran*\ 8.[[0-3]]*) # Sun Fortran 8.3 passes all unrecognized flags to the linker _LT_TAGVAR(lt_prog_compiler_pic, $1)='-KPIC' _LT_TAGVAR(lt_prog_compiler_static, $1)='-Bstatic' _LT_TAGVAR(lt_prog_compiler_wl, $1)='' ;; *Sun\ F* | *Sun*Fortran*) _LT_TAGVAR(lt_prog_compiler_pic, $1)='-KPIC' _LT_TAGVAR(lt_prog_compiler_static, $1)='-Bstatic' _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Qoption ld ' ;; *Sun\ C*) # Sun C 5.9 _LT_TAGVAR(lt_prog_compiler_pic, $1)='-KPIC' _LT_TAGVAR(lt_prog_compiler_static, $1)='-Bstatic' _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,' ;; *Intel*\ [[CF]]*Compiler*) _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,' _LT_TAGVAR(lt_prog_compiler_pic, $1)='-fPIC' _LT_TAGVAR(lt_prog_compiler_static, $1)='-static' ;; *Portland\ Group*) _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,' _LT_TAGVAR(lt_prog_compiler_pic, $1)='-fpic' _LT_TAGVAR(lt_prog_compiler_static, $1)='-Bstatic' ;; esac ;; esac ;; newsos6) _LT_TAGVAR(lt_prog_compiler_pic, $1)='-KPIC' _LT_TAGVAR(lt_prog_compiler_static, $1)='-Bstatic' ;; *nto* | *qnx*) # QNX uses GNU C++, but need to define -shared option too, otherwise # it will coredump. _LT_TAGVAR(lt_prog_compiler_pic, $1)='-fPIC -shared' ;; osf3* | osf4* | osf5*) _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,' # All OSF/1 code is PIC. _LT_TAGVAR(lt_prog_compiler_static, $1)='-non_shared' ;; rdos*) _LT_TAGVAR(lt_prog_compiler_static, $1)='-non_shared' ;; solaris*) _LT_TAGVAR(lt_prog_compiler_pic, $1)='-KPIC' _LT_TAGVAR(lt_prog_compiler_static, $1)='-Bstatic' case $cc_basename in f77* | f90* | f95* | sunf77* | sunf90* | sunf95*) _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Qoption ld ';; *) _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,';; esac ;; sunos4*) _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Qoption ld ' _LT_TAGVAR(lt_prog_compiler_pic, $1)='-PIC' _LT_TAGVAR(lt_prog_compiler_static, $1)='-Bstatic' ;; sysv4 | sysv4.2uw2* | sysv4.3*) _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,' _LT_TAGVAR(lt_prog_compiler_pic, $1)='-KPIC' _LT_TAGVAR(lt_prog_compiler_static, $1)='-Bstatic' ;; sysv4*MP*) if test -d /usr/nec ;then _LT_TAGVAR(lt_prog_compiler_pic, $1)='-Kconform_pic' _LT_TAGVAR(lt_prog_compiler_static, $1)='-Bstatic' fi ;; sysv5* | unixware* | sco3.2v5* | sco5v6* | OpenUNIX*) _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,' _LT_TAGVAR(lt_prog_compiler_pic, $1)='-KPIC' _LT_TAGVAR(lt_prog_compiler_static, $1)='-Bstatic' ;; unicos*) _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,' _LT_TAGVAR(lt_prog_compiler_can_build_shared, $1)=no ;; uts4*) _LT_TAGVAR(lt_prog_compiler_pic, $1)='-pic' _LT_TAGVAR(lt_prog_compiler_static, $1)='-Bstatic' ;; *) _LT_TAGVAR(lt_prog_compiler_can_build_shared, $1)=no ;; esac fi ]) case $host_os in # For platforms which do not support PIC, -DPIC is meaningless: *djgpp*) _LT_TAGVAR(lt_prog_compiler_pic, $1)= ;; *) _LT_TAGVAR(lt_prog_compiler_pic, $1)="$_LT_TAGVAR(lt_prog_compiler_pic, $1)@&t@m4_if([$1],[],[ -DPIC],[m4_if([$1],[CXX],[ -DPIC],[])])" ;; esac AC_CACHE_CHECK([for $compiler option to produce PIC], [_LT_TAGVAR(lt_cv_prog_compiler_pic, $1)], [_LT_TAGVAR(lt_cv_prog_compiler_pic, $1)=$_LT_TAGVAR(lt_prog_compiler_pic, $1)]) _LT_TAGVAR(lt_prog_compiler_pic, $1)=$_LT_TAGVAR(lt_cv_prog_compiler_pic, $1) # # Check to make sure the PIC flag actually works. # if test -n "$_LT_TAGVAR(lt_prog_compiler_pic, $1)"; then _LT_COMPILER_OPTION([if $compiler PIC flag $_LT_TAGVAR(lt_prog_compiler_pic, $1) works], [_LT_TAGVAR(lt_cv_prog_compiler_pic_works, $1)], [$_LT_TAGVAR(lt_prog_compiler_pic, $1)@&t@m4_if([$1],[],[ -DPIC],[m4_if([$1],[CXX],[ -DPIC],[])])], [], [case $_LT_TAGVAR(lt_prog_compiler_pic, $1) in "" | " "*) ;; *) _LT_TAGVAR(lt_prog_compiler_pic, $1)=" $_LT_TAGVAR(lt_prog_compiler_pic, $1)" ;; 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To avoid this, we pick a random, # 256 KiB-aligned image base between 0x50000000 and 0x6FFC0000 at link # time. 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This is # necessary to make sure instantiated templates are included # in the archive. _LT_TAGVAR(old_archive_cmds, $1)='$CC -ar -WR,-u -o $oldlib $oldobjs' ;; *) if test "$GXX" = yes; then if test "$with_gnu_ld" = no; then _LT_TAGVAR(archive_cmds, $1)='$CC -shared $pic_flag -nostdlib $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags ${wl}-soname ${wl}$soname `test -n "$verstring" && func_echo_all "${wl}-set_version ${wl}$verstring"` ${wl}-update_registry ${wl}${output_objdir}/so_locations -o $lib' else _LT_TAGVAR(archive_cmds, $1)='$CC -shared $pic_flag -nostdlib $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags ${wl}-soname ${wl}$soname `test -n "$verstring" && func_echo_all "${wl}-set_version ${wl}$verstring"` -o $lib' fi fi _LT_TAGVAR(link_all_deplibs, $1)=yes ;; esac _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='${wl}-rpath ${wl}$libdir' _LT_TAGVAR(hardcode_libdir_separator, $1)=: _LT_TAGVAR(inherit_rpath, $1)=yes ;; linux* | k*bsd*-gnu | kopensolaris*-gnu) case $cc_basename in KCC*) # Kuck and Associates, Inc. (KAI) C++ Compiler # KCC will only create a shared library if the output file # ends with ".so" (or ".sl" for HP-UX), so rename the library # to its proper name (with version) after linking. _LT_TAGVAR(archive_cmds, $1)='tempext=`echo $shared_ext | $SED -e '\''s/\([[^()0-9A-Za-z{}]]\)/\\\\\1/g'\''`; templib=`echo $lib | $SED -e "s/\${tempext}\..*/.so/"`; $CC $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags --soname $soname -o \$templib; mv \$templib $lib' _LT_TAGVAR(archive_expsym_cmds, $1)='tempext=`echo $shared_ext | $SED -e '\''s/\([[^()0-9A-Za-z{}]]\)/\\\\\1/g'\''`; templib=`echo $lib | $SED -e "s/\${tempext}\..*/.so/"`; $CC $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags --soname $soname -o \$templib ${wl}-retain-symbols-file,$export_symbols; mv \$templib $lib' # Commands to make compiler produce verbose output that lists # what "hidden" libraries, object files and flags are used when # linking a shared library. # # There doesn't appear to be a way to prevent this compiler from # explicitly linking system object files so we need to strip them # from the output so that they don't get included in the library # dependencies. output_verbose_link_cmd='templist=`$CC $CFLAGS -v conftest.$objext -o libconftest$shared_ext 2>&1 | $GREP "ld"`; rm -f libconftest$shared_ext; list=""; for z in $templist; do case $z in conftest.$objext) list="$list $z";; *.$objext);; *) list="$list $z";;esac; done; func_echo_all "$list"' _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='${wl}-rpath,$libdir' _LT_TAGVAR(export_dynamic_flag_spec, $1)='${wl}--export-dynamic' # Archives containing C++ object files must be created using # "CC -Bstatic", where "CC" is the KAI C++ compiler. _LT_TAGVAR(old_archive_cmds, $1)='$CC -Bstatic -o $oldlib $oldobjs' ;; icpc* | ecpc* ) # Intel C++ with_gnu_ld=yes # version 8.0 and above of icpc choke on multiply defined symbols # if we add $predep_objects and $postdep_objects, however 7.1 and # earlier do not add the objects themselves. case `$CC -V 2>&1` in *"Version 7."*) _LT_TAGVAR(archive_cmds, $1)='$CC -shared $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags ${wl}-soname $wl$soname -o $lib' _LT_TAGVAR(archive_expsym_cmds, $1)='$CC -shared $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags ${wl}-soname $wl$soname ${wl}-retain-symbols-file $wl$export_symbols -o $lib' ;; *) # Version 8.0 or newer tmp_idyn= case $host_cpu in ia64*) tmp_idyn=' -i_dynamic';; esac _LT_TAGVAR(archive_cmds, $1)='$CC -shared'"$tmp_idyn"' $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname -o $lib' _LT_TAGVAR(archive_expsym_cmds, $1)='$CC -shared'"$tmp_idyn"' $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname ${wl}-retain-symbols-file $wl$export_symbols -o $lib' ;; esac _LT_TAGVAR(archive_cmds_need_lc, $1)=no _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='${wl}-rpath,$libdir' _LT_TAGVAR(export_dynamic_flag_spec, $1)='${wl}--export-dynamic' _LT_TAGVAR(whole_archive_flag_spec, $1)='${wl}--whole-archive$convenience ${wl}--no-whole-archive' ;; pgCC* | pgcpp*) # Portland Group C++ compiler case `$CC -V` in *pgCC\ [[1-5]].* | *pgcpp\ [[1-5]].*) _LT_TAGVAR(prelink_cmds, $1)='tpldir=Template.dir~ rm -rf $tpldir~ $CC --prelink_objects --instantiation_dir $tpldir $objs $libobjs $compile_deplibs~ compile_command="$compile_command `find $tpldir -name \*.o | sort | $NL2SP`"' _LT_TAGVAR(old_archive_cmds, $1)='tpldir=Template.dir~ rm -rf $tpldir~ $CC --prelink_objects --instantiation_dir $tpldir $oldobjs$old_deplibs~ $AR $AR_FLAGS $oldlib$oldobjs$old_deplibs `find $tpldir -name \*.o | sort | $NL2SP`~ $RANLIB $oldlib' _LT_TAGVAR(archive_cmds, $1)='tpldir=Template.dir~ rm -rf $tpldir~ $CC --prelink_objects --instantiation_dir $tpldir $predep_objects $libobjs $deplibs $convenience $postdep_objects~ $CC -shared $pic_flag $predep_objects $libobjs $deplibs `find $tpldir -name \*.o | sort | $NL2SP` $postdep_objects $compiler_flags ${wl}-soname ${wl}$soname -o $lib' _LT_TAGVAR(archive_expsym_cmds, $1)='tpldir=Template.dir~ rm -rf $tpldir~ $CC --prelink_objects --instantiation_dir $tpldir $predep_objects $libobjs $deplibs $convenience $postdep_objects~ $CC -shared $pic_flag $predep_objects $libobjs $deplibs `find $tpldir -name \*.o | sort | $NL2SP` $postdep_objects $compiler_flags ${wl}-soname ${wl}$soname ${wl}-retain-symbols-file ${wl}$export_symbols -o $lib' ;; *) # Version 6 and above use weak symbols _LT_TAGVAR(archive_cmds, $1)='$CC -shared $pic_flag $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags ${wl}-soname ${wl}$soname -o $lib' _LT_TAGVAR(archive_expsym_cmds, $1)='$CC -shared $pic_flag $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags ${wl}-soname ${wl}$soname ${wl}-retain-symbols-file ${wl}$export_symbols -o $lib' ;; esac _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='${wl}--rpath ${wl}$libdir' _LT_TAGVAR(export_dynamic_flag_spec, $1)='${wl}--export-dynamic' _LT_TAGVAR(whole_archive_flag_spec, $1)='${wl}--whole-archive`for conv in $convenience\"\"; do test -n \"$conv\" && new_convenience=\"$new_convenience,$conv\"; done; func_echo_all \"$new_convenience\"` ${wl}--no-whole-archive' ;; cxx*) # Compaq C++ _LT_TAGVAR(archive_cmds, $1)='$CC -shared $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags ${wl}-soname $wl$soname -o $lib' _LT_TAGVAR(archive_expsym_cmds, $1)='$CC -shared $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags ${wl}-soname $wl$soname -o $lib ${wl}-retain-symbols-file $wl$export_symbols' runpath_var=LD_RUN_PATH _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='-rpath $libdir' _LT_TAGVAR(hardcode_libdir_separator, $1)=: # Commands to make compiler produce verbose output that lists # what "hidden" libraries, object files and flags are used when # linking a shared library. # # There doesn't appear to be a way to prevent this compiler from # explicitly linking system object files so we need to strip them # from the output so that they don't get included in the library # dependencies. output_verbose_link_cmd='templist=`$CC -shared $CFLAGS -v conftest.$objext 2>&1 | $GREP "ld"`; templist=`func_echo_all "$templist" | $SED "s/\(^.*ld.*\)\( .*ld .*$\)/\1/"`; list=""; for z in $templist; do case $z in conftest.$objext) list="$list $z";; *.$objext);; *) list="$list $z";;esac; done; func_echo_all "X$list" | $Xsed' ;; xl* | mpixl* | bgxl*) # IBM XL 8.0 on PPC, with GNU ld _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='${wl}-rpath ${wl}$libdir' _LT_TAGVAR(export_dynamic_flag_spec, $1)='${wl}--export-dynamic' _LT_TAGVAR(archive_cmds, $1)='$CC -qmkshrobj $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname -o $lib' if test "x$supports_anon_versioning" = xyes; then _LT_TAGVAR(archive_expsym_cmds, $1)='echo "{ global:" > $output_objdir/$libname.ver~ cat $export_symbols | sed -e "s/\(.*\)/\1;/" >> $output_objdir/$libname.ver~ echo "local: *; };" >> $output_objdir/$libname.ver~ $CC -qmkshrobj $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname ${wl}-version-script ${wl}$output_objdir/$libname.ver -o $lib' fi ;; *) case `$CC -V 2>&1 | sed 5q` in *Sun\ C*) # Sun C++ 5.9 _LT_TAGVAR(no_undefined_flag, $1)=' -zdefs' _LT_TAGVAR(archive_cmds, $1)='$CC -G${allow_undefined_flag} -h$soname -o $lib $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags' _LT_TAGVAR(archive_expsym_cmds, $1)='$CC -G${allow_undefined_flag} -h$soname -o $lib $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags ${wl}-retain-symbols-file ${wl}$export_symbols' _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='-R$libdir' _LT_TAGVAR(whole_archive_flag_spec, $1)='${wl}--whole-archive`new_convenience=; for conv in $convenience\"\"; do test -z \"$conv\" || new_convenience=\"$new_convenience,$conv\"; done; func_echo_all \"$new_convenience\"` ${wl}--no-whole-archive' _LT_TAGVAR(compiler_needs_object, $1)=yes # Not sure whether something based on # $CC $CFLAGS -v conftest.$objext -o libconftest$shared_ext 2>&1 # would be better. output_verbose_link_cmd='func_echo_all' # Archives containing C++ object files must be created using # "CC -xar", where "CC" is the Sun C++ compiler. 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(KAI) C++ Compiler # KCC will only create a shared library if the output file # ends with ".so" (or ".sl" for HP-UX), so rename the library # to its proper name (with version) after linking. _LT_TAGVAR(archive_cmds, $1)='tempext=`echo $shared_ext | $SED -e '\''s/\([[^()0-9A-Za-z{}]]\)/\\\\\1/g'\''`; templib=`echo "$lib" | $SED -e "s/\${tempext}\..*/.so/"`; $CC $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags --soname $soname -o \$templib; mv \$templib $lib' _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='${wl}-rpath,$libdir' _LT_TAGVAR(hardcode_libdir_separator, $1)=: # Archives containing C++ object files must be created using # the KAI C++ compiler. case $host in osf3*) _LT_TAGVAR(old_archive_cmds, $1)='$CC -Bstatic -o $oldlib $oldobjs' ;; *) _LT_TAGVAR(old_archive_cmds, $1)='$CC -o $oldlib $oldobjs' ;; esac ;; RCC*) # Rational C++ 2.4.1 # FIXME: insert proper C++ library support _LT_TAGVAR(ld_shlibs, $1)=no ;; cxx*) case $host in osf3*) _LT_TAGVAR(allow_undefined_flag, $1)=' ${wl}-expect_unresolved ${wl}\*' _LT_TAGVAR(archive_cmds, $1)='$CC -shared${allow_undefined_flag} $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags ${wl}-soname $soname `test -n "$verstring" && func_echo_all "${wl}-set_version $verstring"` -update_registry ${output_objdir}/so_locations -o $lib' _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='${wl}-rpath ${wl}$libdir' ;; *) _LT_TAGVAR(allow_undefined_flag, $1)=' -expect_unresolved \*' _LT_TAGVAR(archive_cmds, $1)='$CC -shared${allow_undefined_flag} $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags -msym -soname $soname `test -n "$verstring" && func_echo_all "-set_version $verstring"` -update_registry ${output_objdir}/so_locations -o $lib' _LT_TAGVAR(archive_expsym_cmds, $1)='for i in `cat $export_symbols`; do printf "%s %s\\n" -exported_symbol "\$i" >> $lib.exp; done~ echo "-hidden">> $lib.exp~ $CC -shared$allow_undefined_flag $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags -msym -soname $soname ${wl}-input ${wl}$lib.exp `test -n "$verstring" && $ECHO "-set_version $verstring"` -update_registry ${output_objdir}/so_locations -o $lib~ $RM $lib.exp' _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='-rpath $libdir' ;; esac _LT_TAGVAR(hardcode_libdir_separator, $1)=: # Commands to make compiler produce verbose output that lists # what "hidden" libraries, object files and flags are used when # linking a shared library. # # There doesn't appear to be a way to prevent this compiler from # explicitly linking system object files so we need to strip them # from the output so that they don't get included in the library # dependencies. output_verbose_link_cmd='templist=`$CC -shared $CFLAGS -v conftest.$objext 2>&1 | $GREP "ld" | $GREP -v "ld:"`; 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Vaughan, 2004 # # This file is free software; the Free Software Foundation gives # unlimited permission to copy and/or distribute it, with or without # modifications, as long as this notice is preserved. # serial 6 ltsugar.m4 # This is to help aclocal find these macros, as it can't see m4_define. AC_DEFUN([LTSUGAR_VERSION], [m4_if([0.1])]) # lt_join(SEP, ARG1, [ARG2...]) # ----------------------------- # Produce ARG1SEPARG2...SEPARGn, omitting [] arguments and their # associated separator. # Needed until we can rely on m4_join from Autoconf 2.62, since all earlier # versions in m4sugar had bugs. m4_define([lt_join], [m4_if([$#], [1], [], [$#], [2], [[$2]], [m4_if([$2], [], [], [[$2]_])$0([$1], m4_shift(m4_shift($@)))])]) m4_define([_lt_join], [m4_if([$#$2], [2], [], [m4_if([$2], [], [], [[$1$2]])$0([$1], m4_shift(m4_shift($@)))])]) # lt_car(LIST) # lt_cdr(LIST) # ------------ # Manipulate m4 lists. # These macros are necessary as long as will still need to support # Autoconf-2.59 which quotes differently. m4_define([lt_car], [[$1]]) m4_define([lt_cdr], [m4_if([$#], 0, [m4_fatal([$0: cannot be called without arguments])], [$#], 1, [], [m4_dquote(m4_shift($@))])]) m4_define([lt_unquote], $1) # lt_append(MACRO-NAME, STRING, [SEPARATOR]) # ------------------------------------------ # Redefine MACRO-NAME to hold its former content plus `SEPARATOR'`STRING'. # Note that neither SEPARATOR nor STRING are expanded; they are appended # to MACRO-NAME as is (leaving the expansion for when MACRO-NAME is invoked). # No SEPARATOR is output if MACRO-NAME was previously undefined (different # than defined and empty). # # This macro is needed until we can rely on Autoconf 2.62, since earlier # versions of m4sugar mistakenly expanded SEPARATOR but not STRING. m4_define([lt_append], [m4_define([$1], m4_ifdef([$1], [m4_defn([$1])[$3]])[$2])]) # lt_combine(SEP, PREFIX-LIST, INFIX, SUFFIX1, [SUFFIX2...]) # ---------------------------------------------------------- # Produce a SEP delimited list of all paired combinations of elements of # PREFIX-LIST with SUFFIX1 through SUFFIXn. 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Redistributions of source code must retain the above copyright # notice, this list of conditions and the following disclaimer. # # 2. Redistributions in binary form must reproduce the above # copyright notice, this list of conditions and the following # disclaimer in the documentation and/or other materials provided # with the distribution. # # 3. The name of the author may not be used to endorse or promote # products derived from this software without specific prior written # permission. # # THIS SOFTWARE IS PROVIDED BY THE AUTHOR ``AS IS'' AND ANY EXPRESS # OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED # WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE # ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHOR BE LIABLE FOR ANY # DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL # DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE # GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS # INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, # WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING # NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS # SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. # ### # # Script for automatically preparing the sources for compilation by # performing the myriad of necessary steps. The script attempts to # detect proper version support, and outputs warnings about particular # systems that have autotool peculiarities. # # Basically, if everything is set up and installed correctly, the # script will validate that minimum versions of the GNU Build System # tools are installed, account for several common configuration # issues, and then simply run autoreconf for you. # # If autoreconf fails, which can happen for many valid configurations, # this script proceeds to run manual preparation steps effectively # providing a POSIX shell script (mostly complete) reimplementation of # autoreconf. # # The AUTORECONF, AUTOCONF, AUTOMAKE, LIBTOOLIZE, ACLOCAL, AUTOHEADER # environment variables and corresponding _OPTIONS variables (e.g. # AUTORECONF_OPTIONS) may be used to override the default automatic # detection behaviors. Similarly the _VERSION variables will override # the minimum required version numbers. # # Examples: # # To obtain help on usage: # ./autogen.sh --help # # To obtain verbose output: # ./autogen.sh --verbose # # To skip autoreconf and prepare manually: # AUTORECONF=false ./autogen.sh # # To verbosely try running with an older (unsupported) autoconf: # AUTOCONF_VERSION=2.50 ./autogen.sh --verbose # # Author: # Christopher Sean Morrison # # Patches: # Sebastian Pipping # ###################################################################### # set to minimum acceptable version of autoconf if [ "x$AUTOCONF_VERSION" = "x" ] ; then AUTOCONF_VERSION=2.52 fi # set to minimum acceptable version of automake if [ "x$AUTOMAKE_VERSION" = "x" ] ; then AUTOMAKE_VERSION=1.11 fi # set to minimum acceptable version of libtool if [ "x$LIBTOOL_VERSION" = "x" ] ; then LIBTOOL_VERSION=1.4.2 fi ################## # ident function # ################## ident ( ) { # extract copyright from header __copyright="`grep Copyright $AUTOGEN_SH | head -${HEAD_N}1 | awk '{print $4}'`" if [ "x$__copyright" = "x" ] ; then __copyright="`date +%Y`" fi # extract version from CVS Id string __id="$Id: autogen.sh 33925 2009-03-01 23:27:06Z brlcad $" __version="`echo $__id | sed 's/.*\([0-9][0-9][0-9][0-9]\)[-\/]\([0-9][0-9]\)[-\/]\([0-9][0-9]\).*/\1\2\3/'`" if [ "x$__version" = "x" ] ; then __version="" fi echo "autogen.sh build preparation script by Christopher Sean Morrison" echo " + config.guess download patch by Sebastian Pipping (2008-12-03)" echo "revised 3-clause BSD-style license, copyright (c) $__copyright" echo "script version $__version, ISO/IEC 9945 POSIX shell script" } ################## # USAGE FUNCTION # ################## usage ( ) { echo "Usage: $AUTOGEN_SH [-h|--help] [-v|--verbose] [-q|--quiet] [-d|--download] [--version]" echo " --help Help on $NAME_OF_AUTOGEN usage" echo " --verbose Verbose progress output" echo " --quiet Quiet suppressed progress output" echo " --download Download the latest config.guess from gnulib" echo " --version Only perform GNU Build System version checks" echo echo "Description: This script will validate that minimum versions of the" echo "GNU Build System tools are installed and then run autoreconf for you." echo "Should autoreconf fail, manual preparation steps will be run" echo "potentially accounting for several common preparation issues. The" echo "AUTORECONF, AUTOCONF, AUTOMAKE, LIBTOOLIZE, ACLOCAL, AUTOHEADER," echo "PROJECT, & CONFIGURE environment variables and corresponding _OPTIONS" echo "variables (e.g. AUTORECONF_OPTIONS) may be used to override the" echo "default automatic detection behavior." echo ident return 0 } ########################## # VERSION_ERROR FUNCTION # ########################## version_error ( ) { if [ "x$1" = "x" ] ; then echo "INTERNAL ERROR: version_error was not provided a version" exit 1 fi if [ "x$2" = "x" ] ; then echo "INTERNAL ERROR: version_error was not provided an application name" exit 1 fi $ECHO $ECHO "ERROR: To prepare the ${PROJECT} build system from scratch," $ECHO " at least version $1 of $2 must be installed." $ECHO $ECHO "$NAME_OF_AUTOGEN does not need to be run on the same machine that will" $ECHO "run configure or make. Either the GNU Autotools will need to be installed" $ECHO "or upgraded on this system, or $NAME_OF_AUTOGEN must be run on the source" $ECHO "code on another system and then transferred to here. -- Cheers!" $ECHO } ########################## # VERSION_CHECK FUNCTION # ########################## version_check ( ) { if [ "x$1" = "x" ] ; then echo "INTERNAL ERROR: version_check was not provided a minimum version" exit 1 fi _min="$1" if [ "x$2" = "x" ] ; then echo "INTERNAL ERROR: version check was not provided a comparison version" exit 1 fi _cur="$2" # needed to handle versions like 1.10 and 1.4-p6 _min="`echo ${_min}. | sed 's/[^0-9]/./g' | sed 's/\.\././g'`" _cur="`echo ${_cur}. | sed 's/[^0-9]/./g' | sed 's/\.\././g'`" _min_major="`echo $_min | cut -d. -f1`" _min_minor="`echo $_min | cut -d. -f2`" _min_patch="`echo $_min | cut -d. -f3`" _cur_major="`echo $_cur | cut -d. -f1`" _cur_minor="`echo $_cur | cut -d. -f2`" _cur_patch="`echo $_cur | cut -d. -f3`" if [ "x$_min_major" = "x" ] ; then _min_major=0 fi if [ "x$_min_minor" = "x" ] ; then _min_minor=0 fi if [ "x$_min_patch" = "x" ] ; then _min_patch=0 fi if [ "x$_cur_minor" = "x" ] ; then _cur_major=0 fi if [ "x$_cur_minor" = "x" ] ; then _cur_minor=0 fi if [ "x$_cur_patch" = "x" ] ; then _cur_patch=0 fi $VERBOSE_ECHO "Checking if ${_cur_major}.${_cur_minor}.${_cur_patch} is greater than ${_min_major}.${_min_minor}.${_min_patch}" if [ $_min_major -lt $_cur_major ] ; then return 0 elif [ $_min_major -eq $_cur_major ] ; then if [ $_min_minor -lt $_cur_minor ] ; then return 0 elif [ $_min_minor -eq $_cur_minor ] ; then if [ $_min_patch -lt $_cur_patch ] ; then return 0 elif [ $_min_patch -eq $_cur_patch ] ; then return 0 fi fi fi return 1 } ###################################### # LOCATE_CONFIGURE_TEMPLATE FUNCTION # ###################################### locate_configure_template ( ) { _pwd="`pwd`" if test -f "./configure.ac" ; then echo "./configure.ac" elif test -f "./configure.in" ; then echo "./configure.in" elif test -f "$_pwd/configure.ac" ; then echo "$_pwd/configure.ac" elif test -f "$_pwd/configure.in" ; then echo "$_pwd/configure.in" elif test -f "$PATH_TO_AUTOGEN/configure.ac" ; then echo "$PATH_TO_AUTOGEN/configure.ac" elif test -f "$PATH_TO_AUTOGEN/configure.in" ; then echo "$PATH_TO_AUTOGEN/configure.in" fi } ################## # argument check # ################## ARGS="$*" PATH_TO_AUTOGEN="`dirname $0`" NAME_OF_AUTOGEN="`basename $0`" AUTOGEN_SH="$PATH_TO_AUTOGEN/$NAME_OF_AUTOGEN" LIBTOOL_M4="${PATH_TO_AUTOGEN}/misc/libtool.m4" if [ "x$HELP" = "x" ] ; then HELP=no fi if [ "x$QUIET" = "x" ] ; then QUIET=no fi if [ "x$VERBOSE" = "x" ] ; then VERBOSE=no fi if [ "x$VERSION_ONLY" = "x" ] ; then VERSION_ONLY=no fi if [ "x$DOWNLOAD" = "x" ] ; then DOWNLOAD=no fi if [ "x$AUTORECONF_OPTIONS" = "x" ] ; then AUTORECONF_OPTIONS="-i -f" fi if [ "x$AUTOCONF_OPTIONS" = "x" ] ; then AUTOCONF_OPTIONS="-f" fi if [ "x$AUTOMAKE_OPTIONS" = "x" ] ; then AUTOMAKE_OPTIONS="-a -c -f" fi ALT_AUTOMAKE_OPTIONS="-a -c" if [ "x$LIBTOOLIZE_OPTIONS" = "x" ] ; then LIBTOOLIZE_OPTIONS="--automake -c -f" fi ALT_LIBTOOLIZE_OPTIONS="--automake --copy --force" if [ "x$ACLOCAL_OPTIONS" = "x" ] ; then ACLOCAL_OPTIONS="" fi if [ "x$AUTOHEADER_OPTIONS" = "x" ] ; then AUTOHEADER_OPTIONS="" fi if [ "x$CONFIG_GUESS_URL" = "x" ] ; then CONFIG_GUESS_URL="http://git.savannah.gnu.org/gitweb/?p=gnulib.git;a=blob_plain;f=build-aux/config.guess;hb=HEAD" fi for arg in $ARGS ; do case "x$arg" in x--help) HELP=yes ;; x-[hH]) HELP=yes ;; x--quiet) QUIET=yes ;; x-[qQ]) QUIET=yes ;; x--verbose) VERBOSE=yes ;; x-[dD]) DOWNLOAD=yes ;; x--download) DOWNLOAD=yes ;; x-[vV]) VERBOSE=yes ;; x--version) VERSION_ONLY=yes ;; *) echo "Unknown option: $arg" echo usage exit 1 ;; esac done ##################### # environment check # ##################### # sanity check before recursions potentially begin if [ ! -f "$AUTOGEN_SH" ] ; then echo "INTERNAL ERROR: $AUTOGEN_SH does not exist" if [ ! "x$0" = "x$AUTOGEN_SH" ] ; then echo "INTERNAL ERROR: dirname/basename inconsistency: $0 != $AUTOGEN_SH" fi exit 1 fi # force locale setting to C so things like date output as expected LC_ALL=C # commands that this script expects for __cmd in echo head tail pwd ; do echo "test" | $__cmd > /dev/null 2>&1 if [ $? != 0 ] ; then echo "INTERNAL ERROR: '${__cmd}' command is required" exit 2 fi done echo "test" | grep "test" > /dev/null 2>&1 if test ! x$? = x0 ; then echo "INTERNAL ERROR: grep command is required" exit 1 fi echo "test" | sed "s/test/test/" > /dev/null 2>&1 if test ! x$? = x0 ; then echo "INTERNAL ERROR: sed command is required" exit 1 fi # determine the behavior of echo case `echo "testing\c"; echo 1,2,3`,`echo -n testing; echo 1,2,3` in *c*,-n*) ECHO_N= ECHO_C=' ' ECHO_T=' ' ;; *c*,* ) ECHO_N=-n ECHO_C= ECHO_T= ;; *) ECHO_N= ECHO_C='\c' ECHO_T= ;; esac # determine the behavior of head case "x`echo 'head' | head -n 1 2>&1`" in *xhead*) HEAD_N="n " ;; *) HEAD_N="" ;; esac # determine the behavior of tail case "x`echo 'tail' | tail -n 1 2>&1`" in *xtail*) TAIL_N="n " ;; *) TAIL_N="" ;; esac VERBOSE_ECHO=: ECHO=: if [ "x$QUIET" = "xyes" ] ; then if [ "x$VERBOSE" = "xyes" ] ; then echo "Verbose output quelled by quiet option. Further output disabled." fi else ECHO=echo if [ "x$VERBOSE" = "xyes" ] ; then echo "Verbose output enabled" VERBOSE_ECHO=echo fi fi # allow a recursive run to disable further recursions if [ "x$RUN_RECURSIVE" = "x" ] ; then RUN_RECURSIVE=yes fi ################################################ # check for help arg and bypass version checks # ################################################ if [ "x`echo $ARGS | sed 's/.*[hH][eE][lL][pP].*/help/'`" = "xhelp" ] ; then HELP=yes fi if [ "x$HELP" = "xyes" ] ; then usage $ECHO "---" $ECHO "Help was requested. No preparation or configuration will be performed." exit 0 fi ####################### # set up signal traps # ####################### untrap_abnormal ( ) { for sig in 1 2 13 15; do trap - $sig done } # do this cleanup whenever we exit. trap ' # start from the root if test -d "$START_PATH" ; then cd "$START_PATH" fi # restore/delete backup files if test "x$PFC_INIT" = "x1" ; then recursive_restore fi ' 0 # trap SIGHUP (1), SIGINT (2), SIGPIPE (13), SIGTERM (15) for sig in 1 2 13 15; do trap ' $ECHO "" $ECHO "Aborting $NAME_OF_AUTOGEN: caught signal '$sig'" # start from the root if test -d "$START_PATH" ; then cd "$START_PATH" fi # clean up on abnormal exit $VERBOSE_ECHO "rm -rf autom4te.cache" rm -rf autom4te.cache if test -f "acinclude.m4.$$.backup" ; then $VERBOSE_ECHO "cat acinclude.m4.$$.backup > acinclude.m4" chmod u+w acinclude.m4 cat acinclude.m4.$$.backup > acinclude.m4 $VERBOSE_ECHO "rm -f acinclude.m4.$$.backup" rm -f acinclude.m4.$$.backup fi { (exit 1); exit 1; } ' $sig done ############################# # look for a configure file # ############################# if [ "x$CONFIGURE" = "x" ] ; then CONFIGURE="`locate_configure_template`" if [ ! "x$CONFIGURE" = "x" ] ; then $VERBOSE_ECHO "Found a configure template: $CONFIGURE" fi else $ECHO "Using CONFIGURE environment variable override: $CONFIGURE" fi if [ "x$CONFIGURE" = "x" ] ; then if [ "x$VERSION_ONLY" = "xyes" ] ; then CONFIGURE=/dev/null else $ECHO $ECHO "A configure.ac or configure.in file could not be located implying" $ECHO "that the GNU Build System is at least not used in this directory. In" $ECHO "any case, there is nothing to do here without one of those files." $ECHO $ECHO "ERROR: No configure.in or configure.ac file found in `pwd`" exit 1 fi fi #################### # get project name # #################### if [ "x$PROJECT" = "x" ] ; then PROJECT="`grep AC_INIT $CONFIGURE | grep -v '.*#.*AC_INIT' | tail -${TAIL_N}1 | sed 's/^[ ]*AC_INIT(\([^,)]*\).*/\1/' | sed 's/.*\[\(.*\)\].*/\1/'`" if [ "x$PROJECT" = "xAC_INIT" ] ; then # projects might be using the older/deprecated arg-less AC_INIT .. look for AM_INIT_AUTOMAKE instead PROJECT="`grep AM_INIT_AUTOMAKE $CONFIGURE | grep -v '.*#.*AM_INIT_AUTOMAKE' | tail -${TAIL_N}1 | sed 's/^[ ]*AM_INIT_AUTOMAKE(\([^,)]*\).*/\1/' | sed 's/.*\[\(.*\)\].*/\1/'`" fi if [ "x$PROJECT" = "xAM_INIT_AUTOMAKE" ] ; then PROJECT="project" fi if [ "x$PROJECT" = "x" ] ; then PROJECT="project" fi else $ECHO "Using PROJECT environment variable override: $PROJECT" fi $ECHO "Preparing the $PROJECT build system...please wait" $ECHO ######################## # check for autoreconf # ######################## HAVE_AUTORECONF=no if [ "x$AUTORECONF" = "x" ] ; then for AUTORECONF in autoreconf ; do $VERBOSE_ECHO "Checking autoreconf version: $AUTORECONF --version" $AUTORECONF --version > /dev/null 2>&1 if [ $? = 0 ] ; then HAVE_AUTORECONF=yes break fi done else HAVE_AUTORECONF=yes $ECHO "Using AUTORECONF environment variable override: $AUTORECONF" fi ########################## # autoconf version check # ########################## _acfound=no if [ "x$AUTOCONF" = "x" ] ; then for AUTOCONF in autoconf ; do $VERBOSE_ECHO "Checking autoconf version: $AUTOCONF --version" $AUTOCONF --version > /dev/null 2>&1 if [ $? = 0 ] ; then _acfound=yes break fi done else _acfound=yes $ECHO "Using AUTOCONF environment variable override: $AUTOCONF" fi _report_error=no if [ ! "x$_acfound" = "xyes" ] ; then $ECHO "ERROR: Unable to locate GNU Autoconf." _report_error=yes else _version="`$AUTOCONF --version | head -${HEAD_N}1 | sed 's/[^0-9]*\([0-9\.][0-9\.]*\)/\1/'`" if [ "x$_version" = "x" ] ; then _version="0.0.0" fi $ECHO "Found GNU Autoconf version $_version" version_check "$AUTOCONF_VERSION" "$_version" if [ $? -ne 0 ] ; then _report_error=yes fi fi if [ "x$_report_error" = "xyes" ] ; then version_error "$AUTOCONF_VERSION" "GNU Autoconf" exit 1 fi ########################## # automake version check # ########################## _amfound=no if [ "x$AUTOMAKE" = "x" ] ; then for AUTOMAKE in automake ; do $VERBOSE_ECHO "Checking automake version: $AUTOMAKE --version" $AUTOMAKE --version > /dev/null 2>&1 if [ $? = 0 ] ; then _amfound=yes break fi done else _amfound=yes $ECHO "Using AUTOMAKE environment variable override: $AUTOMAKE" fi _report_error=no if [ ! "x$_amfound" = "xyes" ] ; then $ECHO $ECHO "ERROR: Unable to locate GNU Automake." _report_error=yes else _version="`$AUTOMAKE --version | head -${HEAD_N}1 | sed 's/[^0-9]*\([0-9\.][0-9\.]*\)/\1/'`" if [ "x$_version" = "x" ] ; then _version="0.0.0" fi $ECHO "Found GNU Automake version $_version" version_check "$AUTOMAKE_VERSION" "$_version" if [ $? -ne 0 ] ; then _report_error=yes fi fi if [ "x$_report_error" = "xyes" ] ; then version_error "$AUTOMAKE_VERSION" "GNU Automake" exit 1 fi ######################## # check for libtoolize # ######################## HAVE_LIBTOOLIZE=yes HAVE_ALT_LIBTOOLIZE=no _ltfound=no if [ "x$LIBTOOLIZE" = "x" ] ; then LIBTOOLIZE=libtoolize $VERBOSE_ECHO "Checking libtoolize version: $LIBTOOLIZE --version" $LIBTOOLIZE --version > /dev/null 2>&1 if [ ! $? = 0 ] ; then HAVE_LIBTOOLIZE=no $ECHO if [ "x$HAVE_AUTORECONF" = "xno" ] ; then $ECHO "Warning: libtoolize does not appear to be available." else $ECHO "Warning: libtoolize does not appear to be available. This means that" $ECHO "the automatic build preparation via autoreconf will probably not work." $ECHO "Preparing the build by running each step individually, however, should" $ECHO "work and will be done automatically for you if autoreconf fails." fi # look for some alternates for tool in glibtoolize libtoolize15 libtoolize14 libtoolize13 ; do $VERBOSE_ECHO "Checking libtoolize alternate: $tool --version" _glibtoolize="`$tool --version > /dev/null 2>&1`" if [ $? = 0 ] ; then $VERBOSE_ECHO "Found $tool --version" _glti="`which $tool`" if [ "x$_glti" = "x" ] ; then $VERBOSE_ECHO "Cannot find $tool with which" continue; fi if test ! -f "$_glti" ; then $VERBOSE_ECHO "Cannot use $tool, $_glti is not a file" continue; fi _gltidir="`dirname $_glti`" if [ "x$_gltidir" = "x" ] ; then $VERBOSE_ECHO "Cannot find $tool path with dirname of $_glti" continue; fi if test ! -d "$_gltidir" ; then $VERBOSE_ECHO "Cannot use $tool, $_gltidir is not a directory" continue; fi HAVE_ALT_LIBTOOLIZE=yes LIBTOOLIZE="$tool" $ECHO $ECHO "Fortunately, $tool was found which means that your system may simply" $ECHO "have a non-standard or incomplete GNU Autotools install. If you have" $ECHO "sufficient system access, it may be possible to quell this warning by" $ECHO "running:" $ECHO sudo -V > /dev/null 2>&1 if [ $? = 0 ] ; then $ECHO " sudo ln -s $_glti $_gltidir/libtoolize" $ECHO else $ECHO " ln -s $_glti $_gltidir/libtoolize" $ECHO $ECHO "Run that as root or with proper permissions to the $_gltidir directory" $ECHO fi _ltfound=yes break fi done else _ltfound=yes fi else _ltfound=yes $ECHO "Using LIBTOOLIZE environment variable override: $LIBTOOLIZE" fi ############################ # libtoolize version check # ############################ _report_error=no if [ ! "x$_ltfound" = "xyes" ] ; then $ECHO $ECHO "ERROR: Unable to locate GNU Libtool." _report_error=yes else _version="`$LIBTOOLIZE --version | head -${HEAD_N}1 | sed 's/[^0-9]*\([0-9\.][0-9\.]*\)/\1/'`" if [ "x$_version" = "x" ] ; then _version="0.0.0" fi $ECHO "Found GNU Libtool version $_version" version_check "$LIBTOOL_VERSION" "$_version" if [ $? -ne 0 ] ; then _report_error=yes fi fi if [ "x$_report_error" = "xyes" ] ; then version_error "$LIBTOOL_VERSION" "GNU Libtool" exit 1 fi ##################### # check for aclocal # ##################### if [ "x$ACLOCAL" = "x" ] ; then for ACLOCAL in aclocal ; do $VERBOSE_ECHO "Checking aclocal version: $ACLOCAL --version" $ACLOCAL --version > /dev/null 2>&1 if [ $? = 0 ] ; then break fi done else $ECHO "Using ACLOCAL environment variable override: $ACLOCAL" fi ######################## # check for autoheader # ######################## if [ "x$AUTOHEADER" = "x" ] ; then for AUTOHEADER in autoheader ; do $VERBOSE_ECHO "Checking autoheader version: $AUTOHEADER --version" $AUTOHEADER --version > /dev/null 2>&1 if [ $? = 0 ] ; then break fi done else $ECHO "Using AUTOHEADER environment variable override: $AUTOHEADER" fi ######################### # check if version only # ######################### $VERBOSE_ECHO "Checking whether to only output version information" if [ "x$VERSION_ONLY" = "xyes" ] ; then $ECHO ident $ECHO "---" $ECHO "Version requested. No preparation or configuration will be performed." exit 0 fi ################################# # PROTECT_FROM_CLOBBER FUNCTION # ################################# protect_from_clobber ( ) { PFC_INIT=1 # protect COPYING & INSTALL from overwrite by automake. the # automake force option will (inappropriately) ignore the existing # contents of a COPYING and/or INSTALL files (depending on the # version) instead of just forcing *missing* files like it does # for AUTHORS, NEWS, and README. this is broken but extremely # prevalent behavior, so we protect against it by keeping a backup # of the file that can later be restored. for file in COPYING INSTALL ; do if test -f ${file} ; then if test -f ${file}.$$.protect_from_automake.backup ; then $VERBOSE_ECHO "Already backed up ${file} in `pwd`" else $VERBOSE_ECHO "Backing up ${file} in `pwd`" $VERBOSE_ECHO "cp -p ${file} ${file}.$$.protect_from_automake.backup" cp -p ${file} ${file}.$$.protect_from_automake.backup fi fi done } ############################## # RECURSIVE_PROTECT FUNCTION # ############################## recursive_protect ( ) { # for projects using recursive configure, run the build # preparation steps for the subdirectories. this function assumes # START_PATH was set to pwd before recursion begins so that # relative paths work. # git 'r done, protect COPYING and INSTALL from being clobbered protect_from_clobber if test -d autom4te.cache ; then $VERBOSE_ECHO "Found an autom4te.cache directory, deleting it" $VERBOSE_ECHO "rm -rf autom4te.cache" rm -rf autom4te.cache fi # find configure template _configure="`locate_configure_template`" if [ "x$_configure" = "x" ] ; then return fi # $VERBOSE_ECHO "Looking for configure template found `pwd`/$_configure" # look for subdirs # $VERBOSE_ECHO "Looking for subdirs in `pwd`" _det_config_subdirs="`grep AC_CONFIG_SUBDIRS $_configure | grep -v '.*#.*AC_CONFIG_SUBDIRS' | sed 's/^[ ]*AC_CONFIG_SUBDIRS(\(.*\)).*/\1/' | sed 's/.*\[\(.*\)\].*/\1/'`" CHECK_DIRS="" for dir in $_det_config_subdirs ; do if test -d "`pwd`/$dir" ; then CHECK_DIRS="$CHECK_DIRS \"`pwd`/$dir\"" fi done # process subdirs if [ ! "x$CHECK_DIRS" = "x" ] ; then $VERBOSE_ECHO "Recursively scanning the following directories:" $VERBOSE_ECHO " $CHECK_DIRS" for dir in $CHECK_DIRS ; do $VERBOSE_ECHO "Protecting files from automake in $dir" cd "$START_PATH" eval "cd $dir" # recursively git 'r done recursive_protect done fi } # end of recursive_protect ############################# # RESTORE_CLOBBERED FUNCION # ############################# restore_clobbered ( ) { # The automake (and autoreconf by extension) -f/--force-missing # option may overwrite COPYING and INSTALL even if they do exist. # Here we restore the files if necessary. spacer=no for file in COPYING INSTALL ; do if test -f ${file}.$$.protect_from_automake.backup ; then if test -f ${file} ; then # compare entire content, restore if needed if test "x`cat ${file}`" != "x`cat ${file}.$$.protect_from_automake.backup`" ; then if test "x$spacer" = "xno" ; then $VERBOSE_ECHO spacer=yes fi # restore the backup $VERBOSE_ECHO "Restoring ${file} from backup (automake -f likely clobbered it)" $VERBOSE_ECHO "rm -f ${file}" rm -f ${file} $VERBOSE_ECHO "mv ${file}.$$.protect_from_automake.backup ${file}" mv ${file}.$$.protect_from_automake.backup ${file} fi # check contents elif test -f ${file}.$$.protect_from_automake.backup ; then $VERBOSE_ECHO "mv ${file}.$$.protect_from_automake.backup ${file}" mv ${file}.$$.protect_from_automake.backup ${file} fi # -f ${file} # just in case $VERBOSE_ECHO "rm -f ${file}.$$.protect_from_automake.backup" rm -f ${file}.$$.protect_from_automake.backup fi # -f ${file}.$$.protect_from_automake.backup done CONFIGURE="`locate_configure_template`" if [ "x$CONFIGURE" = "x" ] ; then return fi _aux_dir="`grep AC_CONFIG_AUX_DIR $CONFIGURE | grep -v '.*#.*AC_CONFIG_AUX_DIR' | tail -${TAIL_N}1 | sed 's/^[ ]*AC_CONFIG_AUX_DIR(\(.*\)).*/\1/' | sed 's/.*\[\(.*\)\].*/\1/'`" if test ! -d "$_aux_dir" ; then _aux_dir=. fi for file in config.guess config.sub ltmain.sh ; do if test -f "${_aux_dir}/${file}" ; then $VERBOSE_ECHO "rm -f \"${_aux_dir}/${file}.backup\"" rm -f "${_aux_dir}/${file}.backup" fi done } # end of restore_clobbered ############################## # RECURSIVE_RESTORE FUNCTION # ############################## recursive_restore ( ) { # restore COPYING and INSTALL from backup if they were clobbered # for each directory recursively. # git 'r undone restore_clobbered # find configure template _configure="`locate_configure_template`" if [ "x$_configure" = "x" ] ; then return fi # look for subdirs _det_config_subdirs="`grep AC_CONFIG_SUBDIRS $_configure | grep -v '.*#.*AC_CONFIG_SUBDIRS' | sed 's/^[ ]*AC_CONFIG_SUBDIRS(\(.*\)).*/\1/' | sed 's/.*\[\(.*\)\].*/\1/'`" CHECK_DIRS="" for dir in $_det_config_subdirs ; do if test -d "`pwd`/$dir" ; then CHECK_DIRS="$CHECK_DIRS \"`pwd`/$dir\"" fi done # process subdirs if [ ! "x$CHECK_DIRS" = "x" ] ; then $VERBOSE_ECHO "Recursively scanning the following directories:" $VERBOSE_ECHO " $CHECK_DIRS" for dir in $CHECK_DIRS ; do $VERBOSE_ECHO "Checking files for automake damage in $dir" cd "$START_PATH" eval "cd $dir" # recursively git 'r undone recursive_restore done fi } # end of recursive_restore ####################### # INITIALIZE FUNCTION # ####################### initialize ( ) { # this routine performs a variety of directory-specific # initializations. some are sanity checks, some are preventive, # and some are necessary setup detection. # # this function sets: # CONFIGURE # SEARCH_DIRS # CONFIG_SUBDIRS ################################## # check for a configure template # ################################## CONFIGURE="`locate_configure_template`" if [ "x$CONFIGURE" = "x" ] ; then $ECHO $ECHO "A configure.ac or configure.in file could not be located implying" $ECHO "that the GNU Build System is at least not used in this directory. In" $ECHO "any case, there is nothing to do here without one of those files." $ECHO $ECHO "ERROR: No configure.in or configure.ac file found in `pwd`" exit 1 fi ##################### # detect an aux dir # ##################### _aux_dir="`grep AC_CONFIG_AUX_DIR $CONFIGURE | grep -v '.*#.*AC_CONFIG_AUX_DIR' | tail -${TAIL_N}1 | sed 's/^[ ]*AC_CONFIG_AUX_DIR(\(.*\)).*/\1/' | sed 's/.*\[\(.*\)\].*/\1/'`" if test ! -d "$_aux_dir" ; then _aux_dir=. else $VERBOSE_ECHO "Detected auxillary directory: $_aux_dir" fi ################################ # detect a recursive configure # ################################ CONFIG_SUBDIRS="" _det_config_subdirs="`grep AC_CONFIG_SUBDIRS $CONFIGURE | grep -v '.*#.*AC_CONFIG_SUBDIRS' | sed 's/^[ ]*AC_CONFIG_SUBDIRS(\(.*\)).*/\1/' | sed 's/.*\[\(.*\)\].*/\1/'`" for dir in $_det_config_subdirs ; do if test -d "`pwd`/$dir" ; then $VERBOSE_ECHO "Detected recursive configure directory: `pwd`/$dir" CONFIG_SUBDIRS="$CONFIG_SUBDIRS `pwd`/$dir" fi done ########################################################### # make sure certain required files exist for GNU projects # ########################################################### _marker_found="" _marker_found_message_intro='Detected non-GNU marker "' _marker_found_message_mid='" in ' for marker in foreign cygnus ; do _marker_found_message=${_marker_found_message_intro}${marker}${_marker_found_message_mid} _marker_found="`grep 'AM_INIT_AUTOMAKE.*'${marker} $CONFIGURE`" if [ ! "x$_marker_found" = "x" ] ; then $VERBOSE_ECHO "${_marker_found_message}`basename \"$CONFIGURE\"`" break fi if test -f "`dirname \"$CONFIGURE\"/Makefile.am`" ; then _marker_found="`grep 'AUTOMAKE_OPTIONS.*'${marker} Makefile.am`" if [ ! "x$_marker_found" = "x" ] ; then $VERBOSE_ECHO "${_marker_found_message}Makefile.am" break fi fi done if [ "x${_marker_found}" = "x" ] ; then _suggest_foreign=no for file in AUTHORS COPYING ChangeLog INSTALL NEWS README ; do if [ ! -f $file ] ; then $VERBOSE_ECHO "Touching ${file} since it does not exist" _suggest_foreign=yes touch $file fi done if [ "x${_suggest_foreign}" = "xyes" ] ; then $ECHO $ECHO "Warning: Several files expected of projects that conform to the GNU" $ECHO "coding standards were not found. The files were automatically added" $ECHO "for you since you do not have a 'foreign' declaration specified." $ECHO $ECHO "Considered adding 'foreign' to AM_INIT_AUTOMAKE in `basename \"$CONFIGURE\"`" if test -f "`dirname \"$CONFIGURE\"/Makefile.am`" ; then $ECHO "or to AUTOMAKE_OPTIONS in your top-level Makefile.am file." fi $ECHO fi fi ################################################## # make sure certain generated files do not exist # ################################################## for file in config.guess config.sub ltmain.sh ; do if test -f "${_aux_dir}/${file}" ; then $VERBOSE_ECHO "mv -f \"${_aux_dir}/${file}\" \"${_aux_dir}/${file}.backup\"" mv -f "${_aux_dir}/${file}" "${_aux_dir}/${file}.backup" fi done ############################ # search alternate m4 dirs # ############################ SEARCH_DIRS="" for dir in m4 ; do if [ -d $dir ] ; then $VERBOSE_ECHO "Found extra aclocal search directory: $dir" SEARCH_DIRS="$SEARCH_DIRS -I $dir" fi done ###################################### # remove any previous build products # ###################################### if test -d autom4te.cache ; then $VERBOSE_ECHO "Found an autom4te.cache directory, deleting it" $VERBOSE_ECHO "rm -rf autom4te.cache" rm -rf autom4te.cache fi # tcl/tk (and probably others) have a customized aclocal.m4, so can't delete it # if test -f aclocal.m4 ; then # $VERBOSE_ECHO "Found an aclocal.m4 file, deleting it" # $VERBOSE_ECHO "rm -f aclocal.m4" # rm -f aclocal.m4 # fi } # end of initialize() ############## # initialize # ############## # stash path START_PATH="`pwd`" # Before running autoreconf or manual steps, some prep detection work # is necessary or useful. Only needs to occur once per directory, but # does need to traverse the entire subconfigure hierarchy to protect # files from being clobbered even by autoreconf. recursive_protect # start from where we started cd "$START_PATH" # get ready to process initialize ######################################### # DOWNLOAD_GNULIB_CONFIG_GUESS FUNCTION # ######################################### # TODO - should make sure wget/curl exist and/or work before trying to # use them. download_gnulib_config_guess () { # abuse gitweb to download gnulib's latest config.guess via HTTP config_guess_temp="config.guess.$$.download" ret=1 for __cmd in wget curl fetch ; do $VERBOSE_ECHO "Checking for command ${__cmd}" ${__cmd} --version > /dev/null 2>&1 ret=$? if [ ! $ret = 0 ] ; then continue fi __cmd_version=`${__cmd} --version | head -n 1 | sed -e 's/^[^0-9]\+//' -e 's/ .*//'` $VERBOSE_ECHO "Found ${__cmd} ${__cmd_version}" opts="" case ${__cmd} in wget) opts="-O" ;; curl) opts="-o" ;; fetch) opts="-t 5 -f" ;; esac $VERBOSE_ECHO "Running $__cmd \"${CONFIG_GUESS_URL}\" $opts \"${config_guess_temp}\"" eval "$__cmd \"${CONFIG_GUESS_URL}\" $opts \"${config_guess_temp}\"" > /dev/null 2>&1 if [ $? = 0 ] ; then mv -f "${config_guess_temp}" ${_aux_dir}/config.guess ret=0 break fi done if [ ! $ret = 0 ] ; then $ECHO "Warning: config.guess download failed from: $CONFIG_GUESS_URL" rm -f "${config_guess_temp}" fi } ############################## # LIBTOOLIZE_NEEDED FUNCTION # ############################## libtoolize_needed () { ret=1 # means no, don't need libtoolize for feature in AC_PROG_LIBTOOL AM_PROG_LIBTOOL LT_INIT ; do $VERBOSE_ECHO "Searching for $feature in $CONFIGURE" found="`grep \"^$feature.*\" $CONFIGURE`" if [ ! "x$found" = "x" ] ; then ret=0 # means yes, need to run libtoolize break fi done return ${ret} } ############################################ # prepare build via autoreconf or manually # ############################################ reconfigure_manually=no if [ "x$HAVE_AUTORECONF" = "xyes" ] ; then $ECHO $ECHO $ECHO_N "Automatically preparing build ... $ECHO_C" $VERBOSE_ECHO "$AUTORECONF $SEARCH_DIRS $AUTORECONF_OPTIONS" autoreconf_output="`$AUTORECONF $SEARCH_DIRS $AUTORECONF_OPTIONS 2>&1`" ret=$? $VERBOSE_ECHO "$autoreconf_output" if [ ! $ret = 0 ] ; then if [ "x$HAVE_ALT_LIBTOOLIZE" = "xyes" ] ; then if [ ! "x`echo \"$autoreconf_output\" | grep libtoolize | grep \"No such file or directory\"`" = "x" ] ; then $ECHO $ECHO "Warning: autoreconf failed but due to what is usually a common libtool" $ECHO "misconfiguration issue. This problem is encountered on systems that" $ECHO "have installed libtoolize under a different name without providing a" $ECHO "symbolic link or without setting the LIBTOOLIZE environment variable." $ECHO $ECHO "Restarting the preparation steps with LIBTOOLIZE set to $LIBTOOLIZE" export LIBTOOLIZE RUN_RECURSIVE=no export RUN_RECURSIVE untrap_abnormal $VERBOSE_ECHO sh $AUTOGEN_SH "$1" "$2" "$3" "$4" "$5" "$6" "$7" "$8" "$9" sh "$AUTOGEN_SH" "$1" "$2" "$3" "$4" "$5" "$6" "$7" "$8" "$9" exit $? fi fi $ECHO "Warning: $AUTORECONF failed" if test -f ltmain.sh ; then $ECHO "libtoolize being run by autoreconf is not creating ltmain.sh in the auxillary directory like it should" fi $ECHO "Attempting to run the preparation steps individually" reconfigure_manually=yes else if [ "x$DOWNLOAD" = "xyes" ] ; then if libtoolize_needed ; then download_gnulib_config_guess fi fi fi else reconfigure_manually=yes fi ############################ # LIBTOOL_FAILURE FUNCTION # ############################ libtool_failure ( ) { # libtool is rather error-prone in comparison to the other # autotools and this routine attempts to compensate for some # common failures. the output after a libtoolize failure is # parsed for an error related to AC_PROG_LIBTOOL and if found, we # attempt to inject a project-provided libtool.m4 file. _autoconf_output="$1" if [ "x$RUN_RECURSIVE" = "xno" ] ; then # we already tried the libtool.m4, don't try again return 1 fi if test -f "$LIBTOOL_M4" ; then found_libtool="`$ECHO $_autoconf_output | grep AC_PROG_LIBTOOL`" if test ! "x$found_libtool" = "x" ; then if test -f acinclude.m4 ; then rm -f acinclude.m4.$$.backup $VERBOSE_ECHO "cat acinclude.m4 > acinclude.m4.$$.backup" cat acinclude.m4 > acinclude.m4.$$.backup fi $VERBOSE_ECHO "cat \"$LIBTOOL_M4\" >> acinclude.m4" chmod u+w acinclude.m4 cat "$LIBTOOL_M4" >> acinclude.m4 # don't keep doing this RUN_RECURSIVE=no export RUN_RECURSIVE untrap_abnormal $ECHO $ECHO "Restarting the preparation steps with libtool macros in acinclude.m4" $VERBOSE_ECHO sh $AUTOGEN_SH "$1" "$2" "$3" "$4" "$5" "$6" "$7" "$8" "$9" sh "$AUTOGEN_SH" "$1" "$2" "$3" "$4" "$5" "$6" "$7" "$8" "$9" exit $? fi fi } ########################### # MANUAL_AUTOGEN FUNCTION # ########################### manual_autogen ( ) { ################################################## # Manual preparation steps taken are as follows: # # aclocal [-I m4] # # libtoolize --automake -c -f # # aclocal [-I m4] # # autoconf -f # # autoheader # # automake -a -c -f # ################################################## ########### # aclocal # ########### $VERBOSE_ECHO "$ACLOCAL $SEARCH_DIRS $ACLOCAL_OPTIONS" aclocal_output="`$ACLOCAL $SEARCH_DIRS $ACLOCAL_OPTIONS 2>&1`" ret=$? $VERBOSE_ECHO "$aclocal_output" if [ ! $ret = 0 ] ; then $ECHO "ERROR: $ACLOCAL failed" && exit 2 ; fi ############## # libtoolize # ############## if libtoolize_needed ; then if [ "x$HAVE_LIBTOOLIZE" = "xyes" ] ; then $VERBOSE_ECHO "$LIBTOOLIZE $LIBTOOLIZE_OPTIONS" libtoolize_output="`$LIBTOOLIZE $LIBTOOLIZE_OPTIONS 2>&1`" ret=$? $VERBOSE_ECHO "$libtoolize_output" if [ ! $ret = 0 ] ; then $ECHO "ERROR: $LIBTOOLIZE failed" && exit 2 ; fi else if [ "x$HAVE_ALT_LIBTOOLIZE" = "xyes" ] ; then $VERBOSE_ECHO "$LIBTOOLIZE $ALT_LIBTOOLIZE_OPTIONS" libtoolize_output="`$LIBTOOLIZE $ALT_LIBTOOLIZE_OPTIONS 2>&1`" ret=$? $VERBOSE_ECHO "$libtoolize_output" if [ ! $ret = 0 ] ; then $ECHO "ERROR: $LIBTOOLIZE failed" && exit 2 ; fi fi fi ########### # aclocal # ########### # re-run again as instructed by libtoolize $VERBOSE_ECHO "$ACLOCAL $SEARCH_DIRS $ACLOCAL_OPTIONS" aclocal_output="`$ACLOCAL $SEARCH_DIRS $ACLOCAL_OPTIONS 2>&1`" ret=$? $VERBOSE_ECHO "$aclocal_output" # libtoolize might put ltmain.sh in the wrong place if test -f ltmain.sh ; then if test ! -f "${_aux_dir}/ltmain.sh" ; then $ECHO $ECHO "Warning: $LIBTOOLIZE is creating ltmain.sh in the wrong directory" $ECHO $ECHO "Fortunately, the problem can be worked around by simply copying the" $ECHO "file to the appropriate location (${_aux_dir}/). This has been done for you." $ECHO $VERBOSE_ECHO "cp -p ltmain.sh \"${_aux_dir}/ltmain.sh\"" cp -p ltmain.sh "${_aux_dir}/ltmain.sh" $ECHO $ECHO_N "Continuing build preparation ... $ECHO_C" fi fi # ltmain.sh if [ "x$DOWNLOAD" = "xyes" ] ; then download_gnulib_config_guess fi fi # libtoolize_needed ############ # autoconf # ############ $VERBOSE_ECHO $VERBOSE_ECHO "$AUTOCONF $AUTOCONF_OPTIONS" autoconf_output="`$AUTOCONF $AUTOCONF_OPTIONS 2>&1`" ret=$? $VERBOSE_ECHO "$autoconf_output" if [ ! $ret = 0 ] ; then # retry without the -f and check for usage of macros that are too new ac2_59_macros="AC_C_RESTRICT AC_INCLUDES_DEFAULT AC_LANG_ASSERT AC_LANG_WERROR AS_SET_CATFILE" ac2_55_macros="AC_COMPILER_IFELSE AC_FUNC_MBRTOWC AC_HEADER_STDBOOL AC_LANG_CONFTEST AC_LANG_SOURCE AC_LANG_PROGRAM AC_LANG_CALL AC_LANG_FUNC_TRY_LINK AC_MSG_FAILURE AC_PREPROC_IFELSE" ac2_54_macros="AC_C_BACKSLASH_A AC_CONFIG_LIBOBJ_DIR AC_GNU_SOURCE AC_PROG_EGREP AC_PROG_FGREP AC_REPLACE_FNMATCH AC_FUNC_FNMATCH_GNU AC_FUNC_REALLOC AC_TYPE_MBSTATE_T" macros_to_search="" ac_major="`echo ${AUTOCONF_VERSION}. | cut -d. -f1 | sed 's/[^0-9]//g'`" ac_minor="`echo ${AUTOCONF_VERSION}. | cut -d. -f2 | sed 's/[^0-9]//g'`" if [ $ac_major -lt 2 ] ; then macros_to_search="$ac2_59_macros $ac2_55_macros $ac2_54_macros" else if [ $ac_minor -lt 54 ] ; then macros_to_search="$ac2_59_macros $ac2_55_macros $ac2_54_macros" elif [ $ac_minor -lt 55 ] ; then macros_to_search="$ac2_59_macros $ac2_55_macros" elif [ $ac_minor -lt 59 ] ; then macros_to_search="$ac2_59_macros" fi fi configure_ac_macros=__none__ for feature in $macros_to_search ; do $VERBOSE_ECHO "Searching for $feature in $CONFIGURE" found="`grep \"^$feature.*\" $CONFIGURE`" if [ ! "x$found" = "x" ] ; then if [ "x$configure_ac_macros" = "x__none__" ] ; then configure_ac_macros="$feature" else configure_ac_macros="$feature $configure_ac_macros" fi fi done if [ ! "x$configure_ac_macros" = "x__none__" ] ; then $ECHO $ECHO "Warning: Unsupported macros were found in $CONFIGURE" $ECHO $ECHO "The `basename \"$CONFIGURE\"` file was scanned in order to determine if any" $ECHO "unsupported macros are used that exceed the minimum version" $ECHO "settings specified within this file. As such, the following macros" $ECHO "should be removed from configure.ac or the version numbers in this" $ECHO "file should be increased:" $ECHO $ECHO "$configure_ac_macros" $ECHO $ECHO $ECHO_N "Ignorantly continuing build preparation ... $ECHO_C" fi ################### # autoconf, retry # ################### $VERBOSE_ECHO $VERBOSE_ECHO "$AUTOCONF" autoconf_output="`$AUTOCONF 2>&1`" ret=$? $VERBOSE_ECHO "$autoconf_output" if [ ! $ret = 0 ] ; then # test if libtool is busted libtool_failure "$autoconf_output" # let the user know what went wrong cat < ${DESTDIR}/stimfit.app/Contents/PkgInfo rm -f ${DESTDIR}/stimfit.app/Contents/MacOS/stimfit$(EXEEXT) cp -p -f .libs/stimfit$(EXEEXT) ${DESTDIR}/stimfit.app/Contents/MacOS/stimfit$(EXEEXT) if BUILD_PYTHON cp -v ./src/stimfit/py/.libs/libpystf.dylib ${DESTDIR}/stimfit.app/Contents/lib/stimfit/libpystf.dylib ln -sf ../../lib/stimfit/libpystf.dylib ${DESTDIR}/stimfit.app/Contents/Frameworks/stimfit/_stf.so cp -v $(top_srcdir)/src/stimfit/py/*.py ${DESTDIR}/stimfit.app/Contents/Frameworks/stimfit/ cp -v $(top_srcdir)/src/pystfio/*.py ${DESTDIR}/stimfit.app/Contents/Frameworks/stimfit/ ${PYTHON} -m compileall -l ${DESTDIR}/stimfit.app/Contents/Frameworks/stimfit/ endif BUILD_PYTHON $(POSTLINK_COMMAND) ${DESTDIR}/stimfit.app/Contents/MacOS/stimfit$(EXEEXT) \ $(srcdir)/dist/macosx/app.r $(MACSETFILE) -a C ${DESTDIR}/stimfit.app/Contents/MacOS/stimfit$(EXEEXT) cp -f $(top_srcdir)/dist/macosx/stimfit.icns ${DESTDIR}/stimfit.app/Contents/Resources/stimfit.icns install_name_tool -change \ $(LTTARGET)/libstimfit.dylib \ @executable_path/../lib/stimfit/libstimfit.dylib \ ${DESTDIR}/stimfit.app/Contents/MacOS/stimfit install_name_tool -change \ $(LTTARGET)/libstfio.dylib \ @executable_path/../lib/stimfit/libstfio.dylib \ ${DESTDIR}/stimfit.app/Contents/MacOS/stimfit install_name_tool -change \ $(LTTARGET)/libstimfit.dylib \ @executable_path/../lib/stimfit/libstimfit.dylib \ ${DESTDIR}/stimfit.app/Contents/lib/stimfit/libstimfit.dylib install_name_tool -change \ $(LTTARGET)/libstfio.dylib \ @executable_path/../lib/stimfit/libstfio.dylib \ ${DESTDIR}/stimfit.app/Contents/lib/stimfit/libstimfit.dylib install_name_tool -change \ $(LTTARGET)/libstfio.dylib \ @executable_path/../lib/stimfit/libstfio.dylib \ ${DESTDIR}/stimfit.app/Contents/lib/stimfit/libstfio.dylib if BUILD_PYTHON install_name_tool -change \ $(LTTARGET)/libstimfit.dylib \ @executable_path/../lib/stimfit/libstimfit.dylib \ ${DESTDIR}/stimfit.app/Contents/lib/stimfit/libpystf.dylib install_name_tool -change \ $(LTTARGET)/libstfio.dylib \ @executable_path/../lib/stimfit/libstfio.dylib \ ${DESTDIR}/stimfit.app/Contents/lib/stimfit/libpystf.dylib install_name_tool -change \ $(LTTARGET)/libpystf.dylib \ @executable_path/../lib/stimfit/libpystf.dylib \ ${DESTDIR}/stimfit.app/Contents/lib/stimfit/libpystf.dylib endif BUILD_PYTHON endif ISDARWIN endif # !BUILD_MODULE stimfit-0.13.13/ChangeLog0000664000175000017500000003634312275677732012066 00000000000000stimfit (0.13.13-1) unstable; urgency=low * Import/Export from/to python-neo * Fix potential buffer overflows * Fix some bugs in Python code * Use libhdf5-dev instead of libhdf5-serial-dev dependency (Closes: #735157) * Use dh-autoreconf to fix FTBFS on ppc64el (Closes: #735231) * Distinguish only between Windows and non-Windows builds (implicitly posix) (Closes: #728094) -- Christoph Schmidt-Hieber Sun, 09 Feb 2014 10:56:06 +0000 stimfit (0.13.6-1) unstable; urgency=low * Export stfio recordings to pandas * Improved support for accessing date and time of recordings -- Christoph Schmidt-Hieber Wed, 11 Dec 2013 21:42:13 +0000 stimfit (0.13.5-1) unstable; urgency=low * New upstream release - Don't write test results to disk - Fall back to gcc/Unix for unknown platforms/compilers in axodefn.h (Closes: #728094) * Improved batch analysis * Multi-channel concatenation * Less disruptive warnings and error messages -- Christoph Schmidt-Hieber Sat, 30 Nov 2013 18:23:23 +0000 stimfit (0.13.2-1) unstable; urgency=low * New upstream release - Disambiguate template type in boost's reset (Closes: #720825) * Faster plotting * Add support for inner and outer rise time computations * Add option 'align to half-amplitude' when computing averages * Fix some potential buffer overflows * Improve biosig integration * Improve deconvolution-based event detection * Improve fit initialization for some functions -- Christoph Schmidt-Hieber Tue, 17 Sep 2013 16:47:30 +0000 stimfit (0.12.5-1) UNRELEASED; urgency=low * More robust initialization for nonlinear regression * Faster convergence for most fits * Add support for latest abf2 file format (Clampex 10.4) * Fix potential buffer overflow when computing averages -- Christoph Schmidt-Hieber Mon, 08 Jul 2013 19:55:04 +0000 stimfit (0.12.1-1) experimental; urgency=low * Use biosig as additional file reading backend -- Christoph Schmidt-Hieber Tue, 02 Apr 2013 21:22:06 +0000 stimfit (0.11.9-1) UNRELEASED; urgency=low * Fix latency measurements in manual peak mode * GUI adjustments * Build for Debian proper -- Christoph Schmidt-Hieber Fri, 29 Mar 2013 09:20:13 +0000 stimfit (0.11.8-0lucid1) lucid; urgency=low * Make objects iterable in pystfio * Prettify fit dialog -- Christoph Schmidt-Hieber Sun, 17 Feb 2013 13:02:28 +0000 stimfit (0.11.7-0lucid1) lucid; urgency=low * Add missing library to stfio debian package -- Christoph Schmidt-Hieber Sat, 16 Feb 2013 20:20:24 +0000 stimfit (0.11.6-0lucid1) lucid; urgency=low * Corrected some bugs in cursor dialogs -- Christoph Schmidt-Hieber Sat, 16 Feb 2013 14:30:00 +0000 stimfit (0.11.4-0precise1) precise; urgency=low * Fixed monoexponential fit with delay * Release hdf5 resources after reading / writing a file -- Christoph Schmidt-Hieber Fri, 20 Apr 2012 17:18:43 +0000 stimfit (0.11.1-1oneiric1) oneiric; urgency=low * Added stfio_plot.py to stimfit -- Christoph Schmidt-Hieber Sat, 08 Oct 2011 16:41:23 +0000 stimfit (0.11.1-1natty1) natty; urgency=low * Added stfio_plot.py to stimfit -- Christoph Schmidt-Hieber Sat, 08 Oct 2011 16:40:08 +0000 stimfit (0.11.1-1maverick1) maverick; urgency=low * Added stfio_plot.py to stimfit -- Christoph Schmidt-Hieber Sat, 08 Oct 2011 16:39:02 +0000 stimfit (0.11.1-1lucid1) lucid; urgency=low * Added stfio_plot.py to stimfit -- Christoph Schmidt-Hieber Sat, 08 Oct 2011 16:33:22 +0000 stimfit (0.11.0-1oneiric1) oneiric; urgency=low * libstfio factored out as separate, GUI-independent library -- Christoph Schmidt-Hieber Sat, 08 Oct 2011 15:50:54 +0000 stimfit (0.11.0-1natty1) natty; urgency=low * libstfio factored out as separate, GUI-independent library -- Christoph Schmidt-Hieber Sat, 08 Oct 2011 15:48:41 +0000 stimfit (0.11.0-1maverick1) maverick; urgency=low * libstfio factored out as separate, GUI-independent library -- Christoph Schmidt-Hieber Sat, 08 Oct 2011 15:42:22 +0000 stimfit (0.11.0-1lucid1) lucid; urgency=low * libstfio factored out as separate, GUI-independent library -- Christoph Schmidt-Hieber Sat, 08 Oct 2011 14:49:00 +0000 stimfit (0.10.18-2) UNRELEASED; urgency=low * Acknowledging previous NMU * Adjusted dh_python2 call to - invoke it only whenever it is present - do not carry hardcoded python version in X-Python-Version but rather specify current default using -V cmdline option * Use of DEB_BUILD_OPTIONS - Condition running tests on not having 'nocheck' - Rely on parallel= option to specify number of parallel builds, instead of hardcoded -j4 * Use of dh_numpy (if present) to specify numpy ABI dependency * Added ${python:Depends} to stimfit itself -- Yaroslav Halchenko Sun, 04 Mar 2012 17:03:34 -0500 stimfit (0.10.18-1.1) unstable; urgency=low * Non-maintainer upload. * Use dh_python2 to set proper dependencies for python-stfio. Note: this only happens for Python 2.7, building for all versions needs maintainer work and isn't suitable for NMU. Closes: #631983 -- Jonathan Wiltshire Sun, 04 Mar 2012 13:33:02 +0000 stimfit (0.10.18-1) unstable; urgency=low * Updated copyright notice for numpy.i -- Christoph Schmidt-Hieber Sat, 10 Sep 2011 15:46:33 +0000 stimfit (0.10.17-1oneiric1) oneiric; urgency=low * Do not redirect Python stdio to separate Window (Closes: #639672) * From previous unreleased version: provide gtest source files (Closes: #631825) -- Christoph Schmidt-Hieber Tue, 30 Aug 2011 23:02:16 +0000 stimfit (0.10.17-1natty1) natty; urgency=low * Do not redirect Python stdio to separate Window (Closes: #639672) * From previous unreleased version: provide gtest source files (Closes: #631825) -- Christoph Schmidt-Hieber Tue, 30 Aug 2011 22:55:12 +0000 stimfit (0.10.17-1maverick1) maverick; urgency=low * Do not redirect Python stdio to separate Window (Closes: #639672) * From previous unreleased version: provide gtest source files (Closes: #631825) -- Christoph Schmidt-Hieber Tue, 30 Aug 2011 22:53:32 +0000 stimfit (0.10.17-1lucid2) lucid; urgency=low * Added source package -- Christoph Schmidt-Hieber Tue, 30 Aug 2011 22:47:50 +0000 stimfit (0.10.17-1lucid1) lucid; urgency=low * Do not redirect Python stdio to separate Window (Closes: #639672) * From previous unreleased version: provide gtest source files (Closes: #631825) -- Christoph Schmidt-Hieber Tue, 30 Aug 2011 22:38:59 +0000 stimfit (0.10.17-1) UNRELEASED; urgency=low * Do not redirect Python stdio to separate Window (Closes: #639672) * From previous unreleased version: provide gtest source files (Closes: #631825) -- Christoph Schmidt-Hieber Tue, 30 Aug 2011 18:17:57 +0000 stimfit (0.10.16-1ubuntu3) natty; urgency=low * Provide gtest source files (Closes: #631825) * File series conversion implemented by Jose Guzman -- Christoph Schmidt-Hieber Sun, 24 Jul 2011 19:13:35 +0000 stimfit (0.10.16-1ubuntu2) maverick; urgency=low * Provide gtest source files (Closes: #631825) * File series conversion implemented by Jose Guzman -- Christoph Schmidt-Hieber Sun, 24 Jul 2011 19:10:52 +0000 stimfit (0.10.16-1ubuntu1) lucid; urgency=low * Provide gtest source files (Closes: #631825) * File series conversion implemented by Jose Guzman -- Christoph Schmidt-Hieber Sun, 24 Jul 2011 19:04:50 +0000 stimfit (0.10.16-1) UNRELEASED; urgency=low * Provide gtest source files (Closes: #631825) * File series conversion implemented by Jose Guzman -- Christoph Schmidt-Hieber Sun, 24 Jul 2011 16:59:56 +0000 stimfit (0.10.15-0ubuntu3) lucid; urgency=low * Igor file export -- Christoph Schmidt-Hieber Tue, 24 May 2011 23:42:50 +0000 stimfit (0.10.15-0ubuntu2) maverick; urgency=low * Igor file export -- Christoph Schmidt-Hieber Tue, 24 May 2011 22:36:01 +0000 stimfit (0.10.15-0ubuntu1) natty; urgency=low * Igor file export -- Christoph Schmidt-Hieber Tue, 24 May 2011 22:45:06 +0000 stimfit (0.10.14-0ubuntu1) lucid; urgency=low * Use unified menu on GTK to resolve problems with Unity and gnome-global-menu applet * Started support for viewing all channels -- Christoph Schmidt-Hieber Mon, 11 Apr 2011 14:56:55 +0000 stimfit (0.10.13-1ubuntu5) natty; urgency=low * Added scaling support to levmar * Fixed a bug in HEKA file reading library * Reversioned because of source change -- Christoph Schmidt-Hieber Sat, 02 Apr 2011 14:03:45 +0000 stimfit (0.10.13-1ubuntu4) maverick; urgency=low * Added scaling support to levmar * Fixed a bug in HEKA file reading library * Reversioned because of source change -- Christoph Schmidt-Hieber Sat, 02 Apr 2011 13:57:48 +0000 stimfit (0.10.13-1ubuntu3) natty; urgency=low * Added scaling support to levmar * Fixed a bug in HEKA file reading library -- Christoph Schmidt-Hieber Sat, 02 Apr 2011 13:27:16 +0000 stimfit (0.10.13-1ubuntu2) maverick; urgency=low * Added scaling support to levmar * Fixed a bug in HEKA file reading library -- Christoph Schmidt-Hieber Sat, 02 Apr 2011 13:21:56 +0000 stimfit (0.10.13-1ubuntu1) lucid; urgency=low * Added scaling support to levmar * Fixed a bug in HEKA file reading library -- Christoph Schmidt-Hieber Sat, 02 Apr 2011 12:45:43 +0000 stimfit (0.10.13-1) unstable; urgency=low * Added scaling support to levmar * Fixed a bug in HEKA file reading library -- Christoph Schmidt-Hieber Sat, 02 Apr 2011 12:33:21 +0000 stimfit (0.10.12-3) unstable; urgency=low * Fixed time stamp for Debian. -- Christoph Schmidt-Hieber Sat, 26 Feb 2011 12:27:04 +0000 stimfit (0.10.12-2) unstable; urgency=low * Fixed version number for Debian. -- Christoph Schmidt-Hieber Wed, 23 Feb 2011 21:10:56 +0000 stimfit (0.10.12-1) UNRELEASED; urgency=low * Fixed gtest build on sid. -- Christoph Schmidt-Hieber Wed, 23 Feb 2011 21:10:56 +0000 stimfit (0.10.12-1ubuntu1) natty; urgency=low * Fixed gtest build on natty. -- Christoph Schmidt-Hieber Wed, 23 Feb 2011 15:36:31 +0000 stimfit (0.10.11-1ubuntu5) natty; urgency=low * Resolved some dependency problems in Python module. -- Christoph Schmidt-Hieber Wed, 23 Feb 2011 14:55:59 +0000 stimfit (0.10.11-1ubuntu4) maverick; urgency=low * Resolved some dependency problems in Python module. -- Christoph Schmidt-Hieber Wed, 23 Feb 2011 14:39:29 +0000 stimfit (0.10.11-1ubuntu3) natty; urgency=low * Resolved some dependency problems in Python module. -- Christoph Schmidt-Hieber Wed, 23 Feb 2011 14:08:14 +0000 stimfit (0.10.11-1ubuntu2) maverick; urgency=low * Resolved some dependency problems in Python module. -- Christoph Schmidt-Hieber Wed, 23 Feb 2011 14:06:39 +0000 stimfit (0.10.11-1ubuntu1) lucid; urgency=low * Resolved some dependency problems in Python module. -- Christoph Schmidt-Hieber Wed, 23 Feb 2011 13:53:47 +0000 stimfit (0.10.11-1) unstable; urgency=low * Resolved some dependency problems in Python module. -- Christoph Schmidt-Hieber Tue, 22 Feb 2011 20:12:18 +0000 stimfit (0.10.10-1ubuntu1) lucid; urgency=low * Failed upload required yet another reversioning... -- Christoph Schmidt-Hieber Thu, 08 Feb 2011 18:11:03 +0000 stimfit (0.10.9-1ubuntu3) lucid; urgency=low * Failed upload required reversioning -- Christoph Schmidt-Hieber Thu, 08 Feb 2011 17:54:56 +0000 stimfit (0.10.9-1ubuntu2) lucid; urgency=low * Moved Python files from dist-packages to private directory (/usr/lib/stimfit) to comply with debian packaging rules. * Minimal unit testing during build. -- Christoph Schmidt-Hieber Thu, 08 Feb 2011 17:34:09 +0000 stimfit (0.10.9-1ubuntu1) maverick; urgency=low * Moved Python files from dist-packages to private directory (/usr/lib/stimfit) to comply with debian packaging rules. * Minimal unit testing during build. -- Christoph Schmidt-Hieber Thu, 08 Feb 2011 17:31:57 +0000 stimfit (0.10.9-1) unstable; urgency=low * Moved Python files from dist-packages to private directory (/usr/lib/stimfit) to comply with debian packaging rules. * Minimal unit testing during build. * Initial Debian release (Closes: #612375) * Upload sponsored by Yaroslav Halchenko -- Christoph Schmidt-Hieber Thu, 08 Feb 2011 16:23:29 +0000 stimfit (0.10.8-0ubuntu2) lucid; urgency=low * Increased matplotlib compatibility * Started to replace printing and graphics export functions using matplotlib as the backend -- Christoph Schmidt-Hieber Thu, 05 Feb 2011 19:44:35 +0000 stimfit (0.10.8-0ubuntu1) maverick; urgency=low * Increased matplotlib compatibility * Started to replace printing and graphics export functions using matplotlib as the backend -- Christoph Schmidt-Hieber Thu, 05 Feb 2011 19:19:41 +0000 stimfit (0.10.7-0ubuntu2) lucid; urgency=low * Fixed "Apply scaling to all windows" -- Christoph Schmidt-Hieber Mon, 31 Jan 2011 11:00:55 +0000 stimfit (0.10.7-0ubuntu1) maverick; urgency=low * Fixed "Apply scaling to all windows" -- Christoph Schmidt-Hieber Thu, 27 Jan 2011 17:12:21 +0000 stimfit (0.10.6-0ubuntu2) lucid; urgency=low * Fixed a bug when accessing files from the Python shell. -- Christoph Schmidt-Hieber Thu, 27 Jan 2011 17:12:21 +0000 stimfit (0.10.6-0ubuntu1) maverick; urgency=low * Fixed a bug when accessing files from the Python shell. -- Christoph Schmidt-Hieber Thu, 27 Jan 2011 17:12:21 +0000 stimfit (0.10.5-0ubuntu5) lucid; urgency=low * Reversioned for lucid. -- Christoph Schmidt-Hieber Sun, 23 Jan 2011 16:32:52 +0000 stimfit (0.10.5-0ubuntu4) lucid; urgency=low * Initial release for lucid (10.04). -- Christoph Schmidt-Hieber Sun, 23 Jan 2011 16:24:41 +0000 stimfit (0.10.5-0ubuntu4) maverick; urgency=low * Added build-arch to debian rules. -- Christoph Schmidt-Hieber Sun, 23 Jan 2011 15:53:17 +0000 stimfit (0.10.5-0ubuntu3) maverick; 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" >&6; } fi if ${lt_cv_path_LD+:} false; then : $as_echo_n "(cached) " >&6 else if test -z "$LD"; then lt_save_ifs="$IFS"; IFS=$PATH_SEPARATOR for ac_dir in $PATH; do IFS="$lt_save_ifs" test -z "$ac_dir" && ac_dir=. if test -f "$ac_dir/$ac_prog" || test -f "$ac_dir/$ac_prog$ac_exeext"; then lt_cv_path_LD="$ac_dir/$ac_prog" # Check to see if the program is GNU ld. I'd rather use --version, # but apparently some variants of GNU ld only accept -v. # Break only if it was the GNU/non-GNU ld that we prefer. case `"$lt_cv_path_LD" -v 2>&1 &5 $as_echo "$LD" >&6; } else { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 $as_echo "no" >&6; } fi test -z "$LD" && as_fn_error $? "no acceptable ld found in \$PATH" "$LINENO" 5 { $as_echo "$as_me:${as_lineno-$LINENO}: checking if the linker ($LD) is GNU ld" >&5 $as_echo_n "checking if the linker ($LD) is GNU ld... 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" >&6; } if ${lt_cv_path_NM+:} false; then : $as_echo_n "(cached) " >&6 else if test -n "$NM"; then # Let the user override the test. lt_cv_path_NM="$NM" else lt_nm_to_check="${ac_tool_prefix}nm" if test -n "$ac_tool_prefix" && test "$build" = "$host"; then lt_nm_to_check="$lt_nm_to_check nm" fi for lt_tmp_nm in $lt_nm_to_check; do lt_save_ifs="$IFS"; IFS=$PATH_SEPARATOR for ac_dir in $PATH /usr/ccs/bin/elf /usr/ccs/bin /usr/ucb /bin; do IFS="$lt_save_ifs" test -z "$ac_dir" && ac_dir=. tmp_nm="$ac_dir/$lt_tmp_nm" if test -f "$tmp_nm" || test -f "$tmp_nm$ac_exeext" ; then # Check to see if the nm accepts a BSD-compat flag. # Adding the `sed 1q' prevents false positives on HP-UX, which says: # nm: unknown option "B" ignored # Tru64's nm complains that /dev/null is an invalid object file case `"$tmp_nm" -B /dev/null 2>&1 | sed '1q'` in */dev/null* | *'Invalid file or object type'*) lt_cv_path_NM="$tmp_nm -B" break ;; *) case `"$tmp_nm" -p /dev/null 2>&1 | sed '1q'` in */dev/null*) lt_cv_path_NM="$tmp_nm -p" break ;; *) lt_cv_path_NM=${lt_cv_path_NM="$tmp_nm"} # keep the first match, but continue # so that we can try to find one that supports BSD flags ;; esac ;; esac fi done IFS="$lt_save_ifs" done : ${lt_cv_path_NM=no} fi fi { $as_echo "$as_me:${as_lineno-$LINENO}: result: $lt_cv_path_NM" >&5 $as_echo "$lt_cv_path_NM" >&6; } if test "$lt_cv_path_NM" != "no"; then NM="$lt_cv_path_NM" else # Didn't find any BSD compatible name lister, look for dumpbin. if test -n "$DUMPBIN"; then : # Let the user override the test. else if test -n "$ac_tool_prefix"; then for ac_prog in dumpbin "link -dump" do # Extract the first word of "$ac_tool_prefix$ac_prog", so it can be a program name with args. set dummy $ac_tool_prefix$ac_prog; ac_word=$2 { $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 $as_echo_n "checking for $ac_word... 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" >&6; } if ${lt_cv_nm_interface+:} false; then : $as_echo_n "(cached) " >&6 else lt_cv_nm_interface="BSD nm" echo "int some_variable = 0;" > conftest.$ac_ext (eval echo "\"\$as_me:$LINENO: $ac_compile\"" >&5) (eval "$ac_compile" 2>conftest.err) cat conftest.err >&5 (eval echo "\"\$as_me:$LINENO: $NM \\\"conftest.$ac_objext\\\"\"" >&5) (eval "$NM \"conftest.$ac_objext\"" 2>conftest.err > conftest.out) cat conftest.err >&5 (eval echo "\"\$as_me:$LINENO: output\"" >&5) cat conftest.out >&5 if $GREP 'External.*some_variable' conftest.out > /dev/null; then lt_cv_nm_interface="MS dumpbin" fi rm -f conftest* fi { $as_echo "$as_me:${as_lineno-$LINENO}: result: $lt_cv_nm_interface" >&5 $as_echo "$lt_cv_nm_interface" >&6; } { $as_echo "$as_me:${as_lineno-$LINENO}: checking whether ln -s works" >&5 $as_echo_n "checking whether ln -s works... 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" >&6; } if ${ac_cv_prog_OBJDUMP+:} false; then : $as_echo_n "(cached) " >&6 else if test -n "$OBJDUMP"; then ac_cv_prog_OBJDUMP="$OBJDUMP" # Let the user override the test. else as_save_IFS=$IFS; IFS=$PATH_SEPARATOR for as_dir in $PATH do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then ac_cv_prog_OBJDUMP="${ac_tool_prefix}objdump" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 fi done done IFS=$as_save_IFS fi fi OBJDUMP=$ac_cv_prog_OBJDUMP if test -n "$OBJDUMP"; then { $as_echo "$as_me:${as_lineno-$LINENO}: result: $OBJDUMP" >&5 $as_echo "$OBJDUMP" >&6; } else { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 $as_echo "no" >&6; } fi fi if test -z "$ac_cv_prog_OBJDUMP"; then ac_ct_OBJDUMP=$OBJDUMP # Extract the first word of "objdump", so it can be a program name with args. set dummy objdump; ac_word=$2 { $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 $as_echo_n "checking for $ac_word... " >&6; } if ${ac_cv_prog_ac_ct_OBJDUMP+:} false; then : $as_echo_n "(cached) " >&6 else if test -n "$ac_ct_OBJDUMP"; then ac_cv_prog_ac_ct_OBJDUMP="$ac_ct_OBJDUMP" # Let the user override the test. else as_save_IFS=$IFS; IFS=$PATH_SEPARATOR for as_dir in $PATH do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then ac_cv_prog_ac_ct_OBJDUMP="objdump" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 fi done done IFS=$as_save_IFS fi fi ac_ct_OBJDUMP=$ac_cv_prog_ac_ct_OBJDUMP if test -n "$ac_ct_OBJDUMP"; then { $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_ct_OBJDUMP" >&5 $as_echo "$ac_ct_OBJDUMP" >&6; } else { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 $as_echo "no" >&6; } fi if test "x$ac_ct_OBJDUMP" = x; then OBJDUMP="false" else case $cross_compiling:$ac_tool_warned in yes:) { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: using cross tools not prefixed with host triplet" >&5 $as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;} ac_tool_warned=yes ;; esac OBJDUMP=$ac_ct_OBJDUMP fi else OBJDUMP="$ac_cv_prog_OBJDUMP" fi test -z "$OBJDUMP" && OBJDUMP=objdump { $as_echo "$as_me:${as_lineno-$LINENO}: checking how to recognize dependent libraries" >&5 $as_echo_n "checking how to recognize dependent libraries... " >&6; } if ${lt_cv_deplibs_check_method+:} false; then : $as_echo_n "(cached) " >&6 else lt_cv_file_magic_cmd='$MAGIC_CMD' lt_cv_file_magic_test_file= lt_cv_deplibs_check_method='unknown' # Need to set the preceding variable on all platforms that support # interlibrary dependencies. # 'none' -- dependencies not supported. # `unknown' -- same as none, but documents that we really don't know. # 'pass_all' -- all dependencies passed with no checks. # 'test_compile' -- check by making test program. # 'file_magic [[regex]]' -- check by looking for files in library path # which responds to the $file_magic_cmd with a given extended regex. # If you have `file' or equivalent on your system and you're not sure # whether `pass_all' will *always* work, you probably want this one. case $host_os in aix[4-9]*) lt_cv_deplibs_check_method=pass_all ;; beos*) lt_cv_deplibs_check_method=pass_all ;; bsdi[45]*) lt_cv_deplibs_check_method='file_magic ELF [0-9][0-9]*-bit [ML]SB (shared object|dynamic lib)' lt_cv_file_magic_cmd='/usr/bin/file -L' lt_cv_file_magic_test_file=/shlib/libc.so ;; cygwin*) # func_win32_libid is a shell function defined in ltmain.sh lt_cv_deplibs_check_method='file_magic ^x86 archive import|^x86 DLL' lt_cv_file_magic_cmd='func_win32_libid' ;; mingw* | pw32*) # Base MSYS/MinGW do not provide the 'file' command needed by # func_win32_libid shell function, so use a weaker test based on 'objdump', # unless we find 'file', for example because we are cross-compiling. # func_win32_libid assumes BSD nm, so disallow it if using MS dumpbin. if ( test "$lt_cv_nm_interface" = "BSD nm" && file / ) >/dev/null 2>&1; then lt_cv_deplibs_check_method='file_magic ^x86 archive import|^x86 DLL' lt_cv_file_magic_cmd='func_win32_libid' else # Keep this pattern in sync with the one in func_win32_libid. lt_cv_deplibs_check_method='file_magic file format (pei*-i386(.*architecture: i386)?|pe-arm-wince|pe-x86-64)' lt_cv_file_magic_cmd='$OBJDUMP -f' fi ;; cegcc*) # use the weaker test based on 'objdump'. See mingw*. lt_cv_deplibs_check_method='file_magic file format pe-arm-.*little(.*architecture: arm)?' lt_cv_file_magic_cmd='$OBJDUMP -f' ;; darwin* | rhapsody*) lt_cv_deplibs_check_method=pass_all ;; freebsd* | dragonfly*) if echo __ELF__ | $CC -E - | $GREP __ELF__ > /dev/null; then case $host_cpu in i*86 ) # Not sure whether the presence of OpenBSD here was a mistake. # Let's accept both of them until this is cleared up. lt_cv_deplibs_check_method='file_magic (FreeBSD|OpenBSD|DragonFly)/i[3-9]86 (compact )?demand paged shared library' lt_cv_file_magic_cmd=/usr/bin/file lt_cv_file_magic_test_file=`echo /usr/lib/libc.so.*` ;; esac else lt_cv_deplibs_check_method=pass_all fi ;; gnu*) lt_cv_deplibs_check_method=pass_all ;; haiku*) lt_cv_deplibs_check_method=pass_all ;; hpux10.20* | hpux11*) lt_cv_file_magic_cmd=/usr/bin/file case $host_cpu in ia64*) lt_cv_deplibs_check_method='file_magic (s[0-9][0-9][0-9]|ELF-[0-9][0-9]) shared object file - IA64' lt_cv_file_magic_test_file=/usr/lib/hpux32/libc.so ;; hppa*64*) lt_cv_deplibs_check_method='file_magic (s[0-9][0-9][0-9]|ELF[ -][0-9][0-9])(-bit)?( [LM]SB)? shared object( file)?[, -]* PA-RISC [0-9]\.[0-9]' lt_cv_file_magic_test_file=/usr/lib/pa20_64/libc.sl ;; *) lt_cv_deplibs_check_method='file_magic (s[0-9][0-9][0-9]|PA-RISC[0-9]\.[0-9]) shared library' lt_cv_file_magic_test_file=/usr/lib/libc.sl ;; esac ;; interix[3-9]*) # PIC code is broken on Interix 3.x, that's why |\.a not |_pic\.a here lt_cv_deplibs_check_method='match_pattern /lib[^/]+(\.so|\.a)$' ;; irix5* | irix6* | nonstopux*) case $LD in *-32|*"-32 ") libmagic=32-bit;; *-n32|*"-n32 ") libmagic=N32;; *-64|*"-64 ") libmagic=64-bit;; *) libmagic=never-match;; esac lt_cv_deplibs_check_method=pass_all ;; # This must be glibc/ELF. linux* | k*bsd*-gnu | kopensolaris*-gnu) lt_cv_deplibs_check_method=pass_all ;; netbsd* | netbsdelf*-gnu) if echo __ELF__ | $CC -E - | $GREP __ELF__ > /dev/null; then lt_cv_deplibs_check_method='match_pattern /lib[^/]+(\.so\.[0-9]+\.[0-9]+|_pic\.a)$' else lt_cv_deplibs_check_method='match_pattern /lib[^/]+(\.so|_pic\.a)$' fi ;; newos6*) lt_cv_deplibs_check_method='file_magic ELF [0-9][0-9]*-bit [ML]SB (executable|dynamic lib)' lt_cv_file_magic_cmd=/usr/bin/file lt_cv_file_magic_test_file=/usr/lib/libnls.so ;; *nto* | *qnx*) lt_cv_deplibs_check_method=pass_all ;; openbsd*) if test -z "`echo __ELF__ | $CC -E - | $GREP __ELF__`" || test "$host_os-$host_cpu" = "openbsd2.8-powerpc"; then lt_cv_deplibs_check_method='match_pattern /lib[^/]+(\.so\.[0-9]+\.[0-9]+|\.so|_pic\.a)$' else lt_cv_deplibs_check_method='match_pattern /lib[^/]+(\.so\.[0-9]+\.[0-9]+|_pic\.a)$' fi ;; osf3* | osf4* | osf5*) lt_cv_deplibs_check_method=pass_all ;; rdos*) lt_cv_deplibs_check_method=pass_all ;; solaris*) lt_cv_deplibs_check_method=pass_all ;; sysv5* | sco3.2v5* | sco5v6* | unixware* | OpenUNIX* | sysv4*uw2*) lt_cv_deplibs_check_method=pass_all ;; sysv4 | sysv4.3*) case $host_vendor in motorola) lt_cv_deplibs_check_method='file_magic ELF [0-9][0-9]*-bit [ML]SB (shared object|dynamic lib) M[0-9][0-9]* Version [0-9]' lt_cv_file_magic_test_file=`echo /usr/lib/libc.so*` ;; ncr) lt_cv_deplibs_check_method=pass_all ;; sequent) lt_cv_file_magic_cmd='/bin/file' lt_cv_deplibs_check_method='file_magic ELF [0-9][0-9]*-bit [LM]SB (shared object|dynamic lib )' ;; sni) lt_cv_file_magic_cmd='/bin/file' lt_cv_deplibs_check_method="file_magic ELF [0-9][0-9]*-bit [LM]SB dynamic lib" lt_cv_file_magic_test_file=/lib/libc.so ;; siemens) lt_cv_deplibs_check_method=pass_all ;; pc) lt_cv_deplibs_check_method=pass_all ;; esac ;; tpf*) lt_cv_deplibs_check_method=pass_all ;; esac fi { $as_echo "$as_me:${as_lineno-$LINENO}: result: $lt_cv_deplibs_check_method" >&5 $as_echo "$lt_cv_deplibs_check_method" >&6; } file_magic_glob= want_nocaseglob=no if test "$build" = "$host"; then case $host_os in mingw* | pw32*) if ( shopt | grep nocaseglob ) >/dev/null 2>&1; then want_nocaseglob=yes else file_magic_glob=`echo aAbBcCdDeEfFgGhHiIjJkKlLmMnNoOpPqQrRsStTuUvVwWxXyYzZ | $SED -e "s/\(..\)/s\/[\1]\/[\1]\/g;/g"` fi ;; esac fi file_magic_cmd=$lt_cv_file_magic_cmd deplibs_check_method=$lt_cv_deplibs_check_method test -z "$deplibs_check_method" && deplibs_check_method=unknown if test -n "$ac_tool_prefix"; then # Extract the first word of "${ac_tool_prefix}dlltool", so it can be a program name with args. set dummy ${ac_tool_prefix}dlltool; ac_word=$2 { $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 $as_echo_n "checking for $ac_word... " >&6; } if ${ac_cv_prog_DLLTOOL+:} false; then : $as_echo_n "(cached) " >&6 else if test -n "$DLLTOOL"; then ac_cv_prog_DLLTOOL="$DLLTOOL" # Let the user override the test. else as_save_IFS=$IFS; IFS=$PATH_SEPARATOR for as_dir in $PATH do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then ac_cv_prog_DLLTOOL="${ac_tool_prefix}dlltool" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 fi done done IFS=$as_save_IFS fi fi DLLTOOL=$ac_cv_prog_DLLTOOL if test -n "$DLLTOOL"; then { $as_echo "$as_me:${as_lineno-$LINENO}: result: $DLLTOOL" >&5 $as_echo "$DLLTOOL" >&6; } else { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 $as_echo "no" >&6; } fi fi if test -z "$ac_cv_prog_DLLTOOL"; then ac_ct_DLLTOOL=$DLLTOOL # Extract the first word of "dlltool", so it can be a program name with args. set dummy dlltool; ac_word=$2 { $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 $as_echo_n "checking for $ac_word... " >&6; } if ${ac_cv_prog_ac_ct_DLLTOOL+:} false; then : $as_echo_n "(cached) " >&6 else if test -n "$ac_ct_DLLTOOL"; then ac_cv_prog_ac_ct_DLLTOOL="$ac_ct_DLLTOOL" # Let the user override the test. else as_save_IFS=$IFS; IFS=$PATH_SEPARATOR for as_dir in $PATH do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then ac_cv_prog_ac_ct_DLLTOOL="dlltool" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 fi done done IFS=$as_save_IFS fi fi ac_ct_DLLTOOL=$ac_cv_prog_ac_ct_DLLTOOL if test -n "$ac_ct_DLLTOOL"; then { $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_ct_DLLTOOL" >&5 $as_echo "$ac_ct_DLLTOOL" >&6; } else { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 $as_echo "no" >&6; } fi if test "x$ac_ct_DLLTOOL" = x; then DLLTOOL="false" else case $cross_compiling:$ac_tool_warned in yes:) { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: using cross tools not prefixed with host triplet" >&5 $as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;} ac_tool_warned=yes ;; esac DLLTOOL=$ac_ct_DLLTOOL fi else DLLTOOL="$ac_cv_prog_DLLTOOL" fi test -z "$DLLTOOL" && DLLTOOL=dlltool { $as_echo "$as_me:${as_lineno-$LINENO}: checking how to associate runtime and link libraries" >&5 $as_echo_n "checking how to associate runtime and link libraries... " >&6; } if ${lt_cv_sharedlib_from_linklib_cmd+:} false; then : $as_echo_n "(cached) " >&6 else lt_cv_sharedlib_from_linklib_cmd='unknown' case $host_os in cygwin* | mingw* | pw32* | cegcc*) # two different shell functions defined in ltmain.sh # decide which to use based on capabilities of $DLLTOOL case `$DLLTOOL --help 2>&1` in *--identify-strict*) lt_cv_sharedlib_from_linklib_cmd=func_cygming_dll_for_implib ;; *) lt_cv_sharedlib_from_linklib_cmd=func_cygming_dll_for_implib_fallback ;; esac ;; *) # fallback: assume linklib IS sharedlib lt_cv_sharedlib_from_linklib_cmd="$ECHO" ;; esac fi { $as_echo "$as_me:${as_lineno-$LINENO}: result: $lt_cv_sharedlib_from_linklib_cmd" >&5 $as_echo "$lt_cv_sharedlib_from_linklib_cmd" >&6; } sharedlib_from_linklib_cmd=$lt_cv_sharedlib_from_linklib_cmd test -z "$sharedlib_from_linklib_cmd" && sharedlib_from_linklib_cmd=$ECHO if test -n "$ac_tool_prefix"; then for ac_prog in ar do # Extract the first word of "$ac_tool_prefix$ac_prog", so it can be a program name with args. set dummy $ac_tool_prefix$ac_prog; ac_word=$2 { $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 $as_echo_n "checking for $ac_word... " >&6; } if ${ac_cv_prog_AR+:} false; then : $as_echo_n "(cached) " >&6 else if test -n "$AR"; then ac_cv_prog_AR="$AR" # Let the user override the test. else as_save_IFS=$IFS; IFS=$PATH_SEPARATOR for as_dir in $PATH do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then ac_cv_prog_AR="$ac_tool_prefix$ac_prog" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 fi done done IFS=$as_save_IFS fi fi AR=$ac_cv_prog_AR if test -n "$AR"; then { $as_echo "$as_me:${as_lineno-$LINENO}: result: $AR" >&5 $as_echo "$AR" >&6; } else { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 $as_echo "no" >&6; } fi test -n "$AR" && break done fi if test -z "$AR"; then ac_ct_AR=$AR for ac_prog in ar do # Extract the first word of "$ac_prog", so it can be a program name with args. set dummy $ac_prog; ac_word=$2 { $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 $as_echo_n "checking for $ac_word... " >&6; } if ${ac_cv_prog_ac_ct_AR+:} false; then : $as_echo_n "(cached) " >&6 else if test -n "$ac_ct_AR"; then ac_cv_prog_ac_ct_AR="$ac_ct_AR" # Let the user override the test. else as_save_IFS=$IFS; IFS=$PATH_SEPARATOR for as_dir in $PATH do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then ac_cv_prog_ac_ct_AR="$ac_prog" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 fi done done IFS=$as_save_IFS fi fi ac_ct_AR=$ac_cv_prog_ac_ct_AR if test -n "$ac_ct_AR"; then { $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_ct_AR" >&5 $as_echo "$ac_ct_AR" >&6; } else { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 $as_echo "no" >&6; } fi test -n "$ac_ct_AR" && break done if test "x$ac_ct_AR" = x; then AR="false" else case $cross_compiling:$ac_tool_warned in yes:) { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: using cross tools not prefixed with host triplet" >&5 $as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;} ac_tool_warned=yes ;; esac AR=$ac_ct_AR fi fi : ${AR=ar} : ${AR_FLAGS=cru} { $as_echo "$as_me:${as_lineno-$LINENO}: checking for archiver @FILE support" >&5 $as_echo_n "checking for archiver @FILE support... " >&6; } if ${lt_cv_ar_at_file+:} false; then : $as_echo_n "(cached) " >&6 else lt_cv_ar_at_file=no cat confdefs.h - <<_ACEOF >conftest.$ac_ext /* end confdefs.h. */ int main () { ; return 0; } _ACEOF if ac_fn_c_try_compile "$LINENO"; then : echo conftest.$ac_objext > conftest.lst lt_ar_try='$AR $AR_FLAGS libconftest.a @conftest.lst >&5' { { eval echo "\"\$as_me\":${as_lineno-$LINENO}: \"$lt_ar_try\""; } >&5 (eval $lt_ar_try) 2>&5 ac_status=$? $as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5 test $ac_status = 0; } if test "$ac_status" -eq 0; then # Ensure the archiver fails upon bogus file names. rm -f conftest.$ac_objext libconftest.a { { eval echo "\"\$as_me\":${as_lineno-$LINENO}: \"$lt_ar_try\""; } >&5 (eval $lt_ar_try) 2>&5 ac_status=$? $as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5 test $ac_status = 0; } if test "$ac_status" -ne 0; then lt_cv_ar_at_file=@ fi fi rm -f conftest.* libconftest.a fi rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext fi { $as_echo "$as_me:${as_lineno-$LINENO}: result: $lt_cv_ar_at_file" >&5 $as_echo "$lt_cv_ar_at_file" >&6; } if test "x$lt_cv_ar_at_file" = xno; then archiver_list_spec= else archiver_list_spec=$lt_cv_ar_at_file fi if test -n "$ac_tool_prefix"; then # Extract the first word of "${ac_tool_prefix}strip", so it can be a program name with args. set dummy ${ac_tool_prefix}strip; ac_word=$2 { $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 $as_echo_n "checking for $ac_word... " >&6; } if ${ac_cv_prog_STRIP+:} false; then : $as_echo_n "(cached) " >&6 else if test -n "$STRIP"; then ac_cv_prog_STRIP="$STRIP" # Let the user override the test. else as_save_IFS=$IFS; IFS=$PATH_SEPARATOR for as_dir in $PATH do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then ac_cv_prog_STRIP="${ac_tool_prefix}strip" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 fi done done IFS=$as_save_IFS fi fi STRIP=$ac_cv_prog_STRIP if test -n "$STRIP"; then { $as_echo "$as_me:${as_lineno-$LINENO}: result: $STRIP" >&5 $as_echo "$STRIP" >&6; } else { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 $as_echo "no" >&6; } fi fi if test -z "$ac_cv_prog_STRIP"; then ac_ct_STRIP=$STRIP # Extract the first word of "strip", so it can be a program name with args. set dummy strip; ac_word=$2 { $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 $as_echo_n "checking for $ac_word... " >&6; } if ${ac_cv_prog_ac_ct_STRIP+:} false; then : $as_echo_n "(cached) " >&6 else if test -n "$ac_ct_STRIP"; then ac_cv_prog_ac_ct_STRIP="$ac_ct_STRIP" # Let the user override the test. else as_save_IFS=$IFS; IFS=$PATH_SEPARATOR for as_dir in $PATH do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then ac_cv_prog_ac_ct_STRIP="strip" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 fi done done IFS=$as_save_IFS fi fi ac_ct_STRIP=$ac_cv_prog_ac_ct_STRIP if test -n "$ac_ct_STRIP"; then { $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_ct_STRIP" >&5 $as_echo "$ac_ct_STRIP" >&6; } else { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 $as_echo "no" >&6; } fi if test "x$ac_ct_STRIP" = x; then STRIP=":" else case $cross_compiling:$ac_tool_warned in yes:) { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: using cross tools not prefixed with host triplet" >&5 $as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;} ac_tool_warned=yes ;; esac STRIP=$ac_ct_STRIP fi else STRIP="$ac_cv_prog_STRIP" fi test -z "$STRIP" && STRIP=: if test -n "$ac_tool_prefix"; then # Extract the first word of "${ac_tool_prefix}ranlib", so it can be a program name with args. set dummy ${ac_tool_prefix}ranlib; ac_word=$2 { $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 $as_echo_n "checking for $ac_word... " >&6; } if ${ac_cv_prog_RANLIB+:} false; then : $as_echo_n "(cached) " >&6 else if test -n "$RANLIB"; then ac_cv_prog_RANLIB="$RANLIB" # Let the user override the test. else as_save_IFS=$IFS; IFS=$PATH_SEPARATOR for as_dir in $PATH do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then ac_cv_prog_RANLIB="${ac_tool_prefix}ranlib" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 fi done done IFS=$as_save_IFS fi fi RANLIB=$ac_cv_prog_RANLIB if test -n "$RANLIB"; then { $as_echo "$as_me:${as_lineno-$LINENO}: result: $RANLIB" >&5 $as_echo "$RANLIB" >&6; } else { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 $as_echo "no" >&6; } fi fi if test -z "$ac_cv_prog_RANLIB"; then ac_ct_RANLIB=$RANLIB # Extract the first word of "ranlib", so it can be a program name with args. set dummy ranlib; ac_word=$2 { $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 $as_echo_n "checking for $ac_word... " >&6; } if ${ac_cv_prog_ac_ct_RANLIB+:} false; then : $as_echo_n "(cached) " >&6 else if test -n "$ac_ct_RANLIB"; then ac_cv_prog_ac_ct_RANLIB="$ac_ct_RANLIB" # Let the user override the test. else as_save_IFS=$IFS; IFS=$PATH_SEPARATOR for as_dir in $PATH do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then ac_cv_prog_ac_ct_RANLIB="ranlib" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 fi done done IFS=$as_save_IFS fi fi ac_ct_RANLIB=$ac_cv_prog_ac_ct_RANLIB if test -n "$ac_ct_RANLIB"; then { $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_ct_RANLIB" >&5 $as_echo "$ac_ct_RANLIB" >&6; } else { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 $as_echo "no" >&6; } fi if test "x$ac_ct_RANLIB" = x; then RANLIB=":" else case $cross_compiling:$ac_tool_warned in yes:) { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: using cross tools not prefixed with host triplet" >&5 $as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;} ac_tool_warned=yes ;; esac RANLIB=$ac_ct_RANLIB fi else RANLIB="$ac_cv_prog_RANLIB" fi test -z "$RANLIB" && RANLIB=: # Determine commands to create old-style static archives. old_archive_cmds='$AR $AR_FLAGS $oldlib$oldobjs' old_postinstall_cmds='chmod 644 $oldlib' old_postuninstall_cmds= if test -n "$RANLIB"; then case $host_os in openbsd*) old_postinstall_cmds="$old_postinstall_cmds~\$RANLIB -t \$tool_oldlib" ;; *) old_postinstall_cmds="$old_postinstall_cmds~\$RANLIB \$tool_oldlib" ;; esac old_archive_cmds="$old_archive_cmds~\$RANLIB \$tool_oldlib" fi case $host_os in darwin*) lock_old_archive_extraction=yes ;; *) lock_old_archive_extraction=no ;; esac # If no C compiler was specified, use CC. LTCC=${LTCC-"$CC"} # If no C compiler flags were specified, use CFLAGS. LTCFLAGS=${LTCFLAGS-"$CFLAGS"} # Allow CC to be a program name with arguments. compiler=$CC # Check for command to grab the raw symbol name followed by C symbol from nm. { $as_echo "$as_me:${as_lineno-$LINENO}: checking command to parse $NM output from $compiler object" >&5 $as_echo_n "checking command to parse $NM output from $compiler object... " >&6; } if ${lt_cv_sys_global_symbol_pipe+:} false; then : $as_echo_n "(cached) " >&6 else # These are sane defaults that work on at least a few old systems. # [They come from Ultrix. What could be older than Ultrix?!! ;)] # Character class describing NM global symbol codes. symcode='[BCDEGRST]' # Regexp to match symbols that can be accessed directly from C. sympat='\([_A-Za-z][_A-Za-z0-9]*\)' # Define system-specific variables. case $host_os in aix*) symcode='[BCDT]' ;; cygwin* | mingw* | pw32* | cegcc*) symcode='[ABCDGISTW]' ;; hpux*) if test "$host_cpu" = ia64; then symcode='[ABCDEGRST]' fi ;; irix* | nonstopux*) symcode='[BCDEGRST]' ;; osf*) symcode='[BCDEGQRST]' ;; solaris*) symcode='[BDRT]' ;; sco3.2v5*) symcode='[DT]' ;; sysv4.2uw2*) symcode='[DT]' ;; sysv5* | sco5v6* | unixware* | OpenUNIX*) symcode='[ABDT]' ;; sysv4) symcode='[DFNSTU]' ;; esac # If we're using GNU nm, then use its standard symbol codes. case `$NM -V 2>&1` in *GNU* | *'with BFD'*) symcode='[ABCDGIRSTW]' ;; esac # Transform an extracted symbol line into a proper C declaration. # Some systems (esp. on ia64) link data and code symbols differently, # so use this general approach. lt_cv_sys_global_symbol_to_cdecl="sed -n -e 's/^T .* \(.*\)$/extern int \1();/p' -e 's/^$symcode* .* \(.*\)$/extern char \1;/p'" # Transform an extracted symbol line into symbol name and symbol address lt_cv_sys_global_symbol_to_c_name_address="sed -n -e 's/^: \([^ ]*\)[ ]*$/ {\\\"\1\\\", (void *) 0},/p' -e 's/^$symcode* \([^ ]*\) \([^ ]*\)$/ {\"\2\", (void *) \&\2},/p'" lt_cv_sys_global_symbol_to_c_name_address_lib_prefix="sed -n -e 's/^: \([^ ]*\)[ ]*$/ {\\\"\1\\\", (void *) 0},/p' -e 's/^$symcode* \([^ ]*\) \(lib[^ ]*\)$/ {\"\2\", (void *) \&\2},/p' -e 's/^$symcode* \([^ ]*\) \([^ ]*\)$/ {\"lib\2\", (void *) \&\2},/p'" # Handle CRLF in mingw tool chain opt_cr= case $build_os in mingw*) opt_cr=`$ECHO 'x\{0,1\}' | tr x '\015'` # option cr in regexp ;; esac # Try without a prefix underscore, then with it. for ac_symprfx in "" "_"; do # Transform symcode, sympat, and symprfx into a raw symbol and a C symbol. symxfrm="\\1 $ac_symprfx\\2 \\2" # Write the raw and C identifiers. if test "$lt_cv_nm_interface" = "MS dumpbin"; then # Fake it for dumpbin and say T for any non-static function # and D for any global variable. # Also find C++ and __fastcall symbols from MSVC++, # which start with @ or ?. lt_cv_sys_global_symbol_pipe="$AWK '"\ " {last_section=section; section=\$ 3};"\ " /^COFF SYMBOL TABLE/{for(i in hide) delete hide[i]};"\ " /Section length .*#relocs.*(pick any)/{hide[last_section]=1};"\ " \$ 0!~/External *\|/{next};"\ " / 0+ UNDEF /{next}; / UNDEF \([^|]\)*()/{next};"\ " {if(hide[section]) next};"\ " {f=0}; \$ 0~/\(\).*\|/{f=1}; {printf f ? \"T \" : \"D \"};"\ " {split(\$ 0, a, /\||\r/); split(a[2], s)};"\ " s[1]~/^[@?]/{print s[1], s[1]; next};"\ " s[1]~prfx {split(s[1],t,\"@\"); print t[1], substr(t[1],length(prfx))}"\ " ' prfx=^$ac_symprfx" else lt_cv_sys_global_symbol_pipe="sed -n -e 's/^.*[ ]\($symcode$symcode*\)[ ][ ]*$ac_symprfx$sympat$opt_cr$/$symxfrm/p'" fi lt_cv_sys_global_symbol_pipe="$lt_cv_sys_global_symbol_pipe | sed '/ __gnu_lto/d'" # Check to see that the pipe works correctly. pipe_works=no rm -f conftest* cat > conftest.$ac_ext <<_LT_EOF #ifdef __cplusplus extern "C" { #endif char nm_test_var; void nm_test_func(void); void nm_test_func(void){} #ifdef __cplusplus } #endif int main(){nm_test_var='a';nm_test_func();return(0);} _LT_EOF if { { eval echo "\"\$as_me\":${as_lineno-$LINENO}: \"$ac_compile\""; } >&5 (eval $ac_compile) 2>&5 ac_status=$? $as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5 test $ac_status = 0; }; then # Now try to grab the symbols. nlist=conftest.nm if { { eval echo "\"\$as_me\":${as_lineno-$LINENO}: \"$NM conftest.$ac_objext \| "$lt_cv_sys_global_symbol_pipe" \> $nlist\""; } >&5 (eval $NM conftest.$ac_objext \| "$lt_cv_sys_global_symbol_pipe" \> $nlist) 2>&5 ac_status=$? $as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5 test $ac_status = 0; } && test -s "$nlist"; then # Try sorting and uniquifying the output. if sort "$nlist" | uniq > "$nlist"T; then mv -f "$nlist"T "$nlist" else rm -f "$nlist"T fi # Make sure that we snagged all the symbols we need. if $GREP ' nm_test_var$' "$nlist" >/dev/null; then if $GREP ' nm_test_func$' "$nlist" >/dev/null; then cat <<_LT_EOF > conftest.$ac_ext /* Keep this code in sync between libtool.m4, ltmain, lt_system.h, and tests. */ #if defined(_WIN32) || defined(__CYGWIN__) || defined(_WIN32_WCE) /* DATA imports from DLLs on WIN32 con't be const, because runtime relocations are performed -- see ld's documentation on pseudo-relocs. */ # define LT_DLSYM_CONST #elif defined(__osf__) /* This system does not cope well with relocations in const data. */ # define LT_DLSYM_CONST #else # define LT_DLSYM_CONST const #endif #ifdef __cplusplus extern "C" { #endif _LT_EOF # Now generate the symbol file. eval "$lt_cv_sys_global_symbol_to_cdecl"' < "$nlist" | $GREP -v main >> conftest.$ac_ext' cat <<_LT_EOF >> conftest.$ac_ext /* The mapping between symbol names and symbols. */ LT_DLSYM_CONST struct { const char *name; void *address; } lt__PROGRAM__LTX_preloaded_symbols[] = { { "@PROGRAM@", (void *) 0 }, _LT_EOF $SED "s/^$symcode$symcode* \(.*\) \(.*\)$/ {\"\2\", (void *) \&\2},/" < "$nlist" | $GREP -v main >> conftest.$ac_ext cat <<\_LT_EOF >> conftest.$ac_ext {0, (void *) 0} }; /* This works around a problem in FreeBSD linker */ #ifdef FREEBSD_WORKAROUND static const void *lt_preloaded_setup() { return lt__PROGRAM__LTX_preloaded_symbols; } #endif #ifdef __cplusplus } #endif _LT_EOF # Now try linking the two files. mv conftest.$ac_objext conftstm.$ac_objext lt_globsym_save_LIBS=$LIBS lt_globsym_save_CFLAGS=$CFLAGS LIBS="conftstm.$ac_objext" CFLAGS="$CFLAGS$lt_prog_compiler_no_builtin_flag" if { { eval echo "\"\$as_me\":${as_lineno-$LINENO}: \"$ac_link\""; } >&5 (eval $ac_link) 2>&5 ac_status=$? $as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5 test $ac_status = 0; } && test -s conftest${ac_exeext}; then pipe_works=yes fi LIBS=$lt_globsym_save_LIBS CFLAGS=$lt_globsym_save_CFLAGS else echo "cannot find nm_test_func in $nlist" >&5 fi else echo "cannot find nm_test_var in $nlist" >&5 fi else echo "cannot run $lt_cv_sys_global_symbol_pipe" >&5 fi else echo "$progname: failed program was:" >&5 cat conftest.$ac_ext >&5 fi rm -rf conftest* conftst* # Do not use the global_symbol_pipe unless it works. if test "$pipe_works" = yes; then break else lt_cv_sys_global_symbol_pipe= fi done fi if test -z "$lt_cv_sys_global_symbol_pipe"; then lt_cv_sys_global_symbol_to_cdecl= fi if test -z "$lt_cv_sys_global_symbol_pipe$lt_cv_sys_global_symbol_to_cdecl"; then { $as_echo "$as_me:${as_lineno-$LINENO}: result: failed" >&5 $as_echo "failed" >&6; } else { $as_echo "$as_me:${as_lineno-$LINENO}: result: ok" >&5 $as_echo "ok" >&6; } fi # Response file support. if test "$lt_cv_nm_interface" = "MS dumpbin"; then nm_file_list_spec='@' elif $NM --help 2>/dev/null | grep '[@]FILE' >/dev/null; then nm_file_list_spec='@' fi { $as_echo "$as_me:${as_lineno-$LINENO}: checking for sysroot" >&5 $as_echo_n "checking for sysroot... " >&6; } # Check whether --with-sysroot was given. if test "${with_sysroot+set}" = set; then : withval=$with_sysroot; else with_sysroot=no fi lt_sysroot= case ${with_sysroot} in #( yes) if test "$GCC" = yes; then lt_sysroot=`$CC --print-sysroot 2>/dev/null` fi ;; #( /*) lt_sysroot=`echo "$with_sysroot" | sed -e "$sed_quote_subst"` ;; #( no|'') ;; #( *) { $as_echo "$as_me:${as_lineno-$LINENO}: result: ${with_sysroot}" >&5 $as_echo "${with_sysroot}" >&6; } as_fn_error $? "The sysroot must be an absolute path." "$LINENO" 5 ;; esac { $as_echo "$as_me:${as_lineno-$LINENO}: result: ${lt_sysroot:-no}" >&5 $as_echo "${lt_sysroot:-no}" >&6; } # Check whether --enable-libtool-lock was given. if test "${enable_libtool_lock+set}" = set; then : enableval=$enable_libtool_lock; fi test "x$enable_libtool_lock" != xno && enable_libtool_lock=yes # Some flags need to be propagated to the compiler or linker for good # libtool support. case $host in ia64-*-hpux*) # Find out which ABI we are using. echo 'int i;' > conftest.$ac_ext if { { eval echo "\"\$as_me\":${as_lineno-$LINENO}: \"$ac_compile\""; } >&5 (eval $ac_compile) 2>&5 ac_status=$? $as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5 test $ac_status = 0; }; then case `/usr/bin/file conftest.$ac_objext` in *ELF-32*) HPUX_IA64_MODE="32" ;; *ELF-64*) HPUX_IA64_MODE="64" ;; esac fi rm -rf conftest* ;; *-*-irix6*) # Find out which ABI we are using. echo '#line '$LINENO' "configure"' > conftest.$ac_ext if { { eval echo "\"\$as_me\":${as_lineno-$LINENO}: \"$ac_compile\""; } >&5 (eval $ac_compile) 2>&5 ac_status=$? $as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5 test $ac_status = 0; }; then if test "$lt_cv_prog_gnu_ld" = yes; then case `/usr/bin/file conftest.$ac_objext` in *32-bit*) LD="${LD-ld} -melf32bsmip" ;; *N32*) LD="${LD-ld} -melf32bmipn32" ;; *64-bit*) LD="${LD-ld} -melf64bmip" ;; esac else case `/usr/bin/file conftest.$ac_objext` in *32-bit*) LD="${LD-ld} -32" ;; *N32*) LD="${LD-ld} -n32" ;; *64-bit*) LD="${LD-ld} -64" ;; esac fi fi rm -rf conftest* ;; x86_64-*kfreebsd*-gnu|x86_64-*linux*|ppc*-*linux*|powerpc*-*linux*| \ s390*-*linux*|s390*-*tpf*|sparc*-*linux*) # Find out which ABI we are using. echo 'int i;' > conftest.$ac_ext if { { eval echo "\"\$as_me\":${as_lineno-$LINENO}: \"$ac_compile\""; } >&5 (eval $ac_compile) 2>&5 ac_status=$? $as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5 test $ac_status = 0; }; then case `/usr/bin/file conftest.o` in *32-bit*) case $host in x86_64-*kfreebsd*-gnu) LD="${LD-ld} -m elf_i386_fbsd" ;; x86_64-*linux*) LD="${LD-ld} -m elf_i386" ;; ppc64-*linux*|powerpc64-*linux*) LD="${LD-ld} -m elf32ppclinux" ;; s390x-*linux*) LD="${LD-ld} -m elf_s390" ;; sparc64-*linux*) LD="${LD-ld} -m elf32_sparc" ;; esac ;; *64-bit*) case $host in x86_64-*kfreebsd*-gnu) LD="${LD-ld} -m elf_x86_64_fbsd" ;; x86_64-*linux*) LD="${LD-ld} -m elf_x86_64" ;; ppc*-*linux*|powerpc*-*linux*) LD="${LD-ld} -m elf64ppc" ;; s390*-*linux*|s390*-*tpf*) LD="${LD-ld} -m elf64_s390" ;; sparc*-*linux*) LD="${LD-ld} -m elf64_sparc" ;; esac ;; esac fi rm -rf conftest* ;; *-*-sco3.2v5*) # On SCO OpenServer 5, we need -belf to get full-featured binaries. SAVE_CFLAGS="$CFLAGS" CFLAGS="$CFLAGS -belf" { $as_echo "$as_me:${as_lineno-$LINENO}: checking whether the C compiler needs -belf" >&5 $as_echo_n "checking whether the C compiler needs -belf... " >&6; } if ${lt_cv_cc_needs_belf+:} false; then : $as_echo_n "(cached) " >&6 else ac_ext=c ac_cpp='$CPP $CPPFLAGS' ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' ac_compiler_gnu=$ac_cv_c_compiler_gnu cat confdefs.h - <<_ACEOF >conftest.$ac_ext /* end confdefs.h. */ int main () { ; return 0; } _ACEOF if ac_fn_c_try_link "$LINENO"; then : lt_cv_cc_needs_belf=yes else lt_cv_cc_needs_belf=no fi rm -f core conftest.err conftest.$ac_objext \ conftest$ac_exeext conftest.$ac_ext ac_ext=c ac_cpp='$CPP $CPPFLAGS' ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' ac_compiler_gnu=$ac_cv_c_compiler_gnu fi { $as_echo "$as_me:${as_lineno-$LINENO}: result: $lt_cv_cc_needs_belf" >&5 $as_echo "$lt_cv_cc_needs_belf" >&6; } if test x"$lt_cv_cc_needs_belf" != x"yes"; then # this is probably gcc 2.8.0, egcs 1.0 or newer; no need for -belf CFLAGS="$SAVE_CFLAGS" fi ;; *-*solaris*) # Find out which ABI we are using. echo 'int i;' > conftest.$ac_ext if { { eval echo "\"\$as_me\":${as_lineno-$LINENO}: \"$ac_compile\""; } >&5 (eval $ac_compile) 2>&5 ac_status=$? $as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5 test $ac_status = 0; }; then case `/usr/bin/file conftest.o` in *64-bit*) case $lt_cv_prog_gnu_ld in yes*) case $host in i?86-*-solaris*) LD="${LD-ld} -m elf_x86_64" ;; sparc*-*-solaris*) LD="${LD-ld} -m elf64_sparc" ;; esac # GNU ld 2.21 introduced _sol2 emulations. Use them if available. if ${LD-ld} -V | grep _sol2 >/dev/null 2>&1; then LD="${LD-ld}_sol2" fi ;; *) if ${LD-ld} -64 -r -o conftest2.o conftest.o >/dev/null 2>&1; then LD="${LD-ld} -64" fi ;; esac ;; esac fi rm -rf conftest* ;; esac need_locks="$enable_libtool_lock" if test -n "$ac_tool_prefix"; then # Extract the first word of "${ac_tool_prefix}mt", so it can be a program name with args. set dummy ${ac_tool_prefix}mt; ac_word=$2 { $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 $as_echo_n "checking for $ac_word... " >&6; } if ${ac_cv_prog_MANIFEST_TOOL+:} false; then : $as_echo_n "(cached) " >&6 else if test -n "$MANIFEST_TOOL"; then ac_cv_prog_MANIFEST_TOOL="$MANIFEST_TOOL" # Let the user override the test. else as_save_IFS=$IFS; IFS=$PATH_SEPARATOR for as_dir in $PATH do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then ac_cv_prog_MANIFEST_TOOL="${ac_tool_prefix}mt" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 fi done done IFS=$as_save_IFS fi fi MANIFEST_TOOL=$ac_cv_prog_MANIFEST_TOOL if test -n "$MANIFEST_TOOL"; then { $as_echo "$as_me:${as_lineno-$LINENO}: result: $MANIFEST_TOOL" >&5 $as_echo "$MANIFEST_TOOL" >&6; } else { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 $as_echo "no" >&6; } fi fi if test -z "$ac_cv_prog_MANIFEST_TOOL"; then ac_ct_MANIFEST_TOOL=$MANIFEST_TOOL # Extract the first word of "mt", so it can be a program name with args. set dummy mt; ac_word=$2 { $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 $as_echo_n "checking for $ac_word... " >&6; } if ${ac_cv_prog_ac_ct_MANIFEST_TOOL+:} false; then : $as_echo_n "(cached) " >&6 else if test -n "$ac_ct_MANIFEST_TOOL"; then ac_cv_prog_ac_ct_MANIFEST_TOOL="$ac_ct_MANIFEST_TOOL" # Let the user override the test. else as_save_IFS=$IFS; IFS=$PATH_SEPARATOR for as_dir in $PATH do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then ac_cv_prog_ac_ct_MANIFEST_TOOL="mt" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 fi done done IFS=$as_save_IFS fi fi ac_ct_MANIFEST_TOOL=$ac_cv_prog_ac_ct_MANIFEST_TOOL if test -n "$ac_ct_MANIFEST_TOOL"; then { $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_ct_MANIFEST_TOOL" >&5 $as_echo "$ac_ct_MANIFEST_TOOL" >&6; } else { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 $as_echo "no" >&6; } fi if test "x$ac_ct_MANIFEST_TOOL" = x; then MANIFEST_TOOL=":" else case $cross_compiling:$ac_tool_warned in yes:) { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: using cross tools not prefixed with host triplet" >&5 $as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;} ac_tool_warned=yes ;; esac MANIFEST_TOOL=$ac_ct_MANIFEST_TOOL fi else MANIFEST_TOOL="$ac_cv_prog_MANIFEST_TOOL" fi test -z "$MANIFEST_TOOL" && MANIFEST_TOOL=mt { $as_echo "$as_me:${as_lineno-$LINENO}: checking if $MANIFEST_TOOL is a manifest tool" >&5 $as_echo_n "checking if $MANIFEST_TOOL is a manifest tool... " >&6; } if ${lt_cv_path_mainfest_tool+:} false; then : $as_echo_n "(cached) " >&6 else lt_cv_path_mainfest_tool=no echo "$as_me:$LINENO: $MANIFEST_TOOL '-?'" >&5 $MANIFEST_TOOL '-?' 2>conftest.err > conftest.out cat conftest.err >&5 if $GREP 'Manifest Tool' conftest.out > /dev/null; then lt_cv_path_mainfest_tool=yes fi rm -f conftest* fi { $as_echo "$as_me:${as_lineno-$LINENO}: result: $lt_cv_path_mainfest_tool" >&5 $as_echo "$lt_cv_path_mainfest_tool" >&6; } if test "x$lt_cv_path_mainfest_tool" != xyes; then MANIFEST_TOOL=: fi case $host_os in rhapsody* | darwin*) if test -n "$ac_tool_prefix"; then # Extract the first word of "${ac_tool_prefix}dsymutil", so it can be a program name with args. set dummy ${ac_tool_prefix}dsymutil; ac_word=$2 { $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 $as_echo_n "checking for $ac_word... " >&6; } if ${ac_cv_prog_DSYMUTIL+:} false; then : $as_echo_n "(cached) " >&6 else if test -n "$DSYMUTIL"; then ac_cv_prog_DSYMUTIL="$DSYMUTIL" # Let the user override the test. else as_save_IFS=$IFS; IFS=$PATH_SEPARATOR for as_dir in $PATH do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then ac_cv_prog_DSYMUTIL="${ac_tool_prefix}dsymutil" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 fi done done IFS=$as_save_IFS fi fi DSYMUTIL=$ac_cv_prog_DSYMUTIL if test -n "$DSYMUTIL"; then { $as_echo "$as_me:${as_lineno-$LINENO}: result: $DSYMUTIL" >&5 $as_echo "$DSYMUTIL" >&6; } else { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 $as_echo "no" >&6; } fi fi if test -z "$ac_cv_prog_DSYMUTIL"; then ac_ct_DSYMUTIL=$DSYMUTIL # Extract the first word of "dsymutil", so it can be a program name with args. set dummy dsymutil; ac_word=$2 { $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 $as_echo_n "checking for $ac_word... " >&6; } if ${ac_cv_prog_ac_ct_DSYMUTIL+:} false; then : $as_echo_n "(cached) " >&6 else if test -n "$ac_ct_DSYMUTIL"; then ac_cv_prog_ac_ct_DSYMUTIL="$ac_ct_DSYMUTIL" # Let the user override the test. else as_save_IFS=$IFS; IFS=$PATH_SEPARATOR for as_dir in $PATH do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then ac_cv_prog_ac_ct_DSYMUTIL="dsymutil" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 fi done done IFS=$as_save_IFS fi fi ac_ct_DSYMUTIL=$ac_cv_prog_ac_ct_DSYMUTIL if test -n "$ac_ct_DSYMUTIL"; then { $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_ct_DSYMUTIL" >&5 $as_echo "$ac_ct_DSYMUTIL" >&6; } else { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 $as_echo "no" >&6; } fi if test "x$ac_ct_DSYMUTIL" = x; then DSYMUTIL=":" else case $cross_compiling:$ac_tool_warned in yes:) { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: using cross tools not prefixed with host triplet" >&5 $as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;} ac_tool_warned=yes ;; esac DSYMUTIL=$ac_ct_DSYMUTIL fi else DSYMUTIL="$ac_cv_prog_DSYMUTIL" fi if test -n "$ac_tool_prefix"; then # Extract the first word of "${ac_tool_prefix}nmedit", so it can be a program name with args. set dummy ${ac_tool_prefix}nmedit; ac_word=$2 { $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 $as_echo_n "checking for $ac_word... " >&6; } if ${ac_cv_prog_NMEDIT+:} false; then : $as_echo_n "(cached) " >&6 else if test -n "$NMEDIT"; then ac_cv_prog_NMEDIT="$NMEDIT" # Let the user override the test. else as_save_IFS=$IFS; IFS=$PATH_SEPARATOR for as_dir in $PATH do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then ac_cv_prog_NMEDIT="${ac_tool_prefix}nmedit" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 fi done done IFS=$as_save_IFS fi fi NMEDIT=$ac_cv_prog_NMEDIT if test -n "$NMEDIT"; then { $as_echo "$as_me:${as_lineno-$LINENO}: result: $NMEDIT" >&5 $as_echo "$NMEDIT" >&6; } else { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 $as_echo "no" >&6; } fi fi if test -z "$ac_cv_prog_NMEDIT"; then ac_ct_NMEDIT=$NMEDIT # Extract the first word of "nmedit", so it can be a program name with args. set dummy nmedit; ac_word=$2 { $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 $as_echo_n "checking for $ac_word... " >&6; } if ${ac_cv_prog_ac_ct_NMEDIT+:} false; then : $as_echo_n "(cached) " >&6 else if test -n "$ac_ct_NMEDIT"; then ac_cv_prog_ac_ct_NMEDIT="$ac_ct_NMEDIT" # Let the user override the test. else as_save_IFS=$IFS; IFS=$PATH_SEPARATOR for as_dir in $PATH do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then ac_cv_prog_ac_ct_NMEDIT="nmedit" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 fi done done IFS=$as_save_IFS fi fi ac_ct_NMEDIT=$ac_cv_prog_ac_ct_NMEDIT if test -n "$ac_ct_NMEDIT"; then { $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_ct_NMEDIT" >&5 $as_echo "$ac_ct_NMEDIT" >&6; } else { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 $as_echo "no" >&6; } fi if test "x$ac_ct_NMEDIT" = x; then NMEDIT=":" else case $cross_compiling:$ac_tool_warned in yes:) { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: using cross tools not prefixed with host triplet" >&5 $as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;} ac_tool_warned=yes ;; esac NMEDIT=$ac_ct_NMEDIT fi else NMEDIT="$ac_cv_prog_NMEDIT" fi if test -n "$ac_tool_prefix"; then # Extract the first word of "${ac_tool_prefix}lipo", so it can be a program name with args. set dummy ${ac_tool_prefix}lipo; ac_word=$2 { $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 $as_echo_n "checking for $ac_word... " >&6; } if ${ac_cv_prog_LIPO+:} false; then : $as_echo_n "(cached) " >&6 else if test -n "$LIPO"; then ac_cv_prog_LIPO="$LIPO" # Let the user override the test. else as_save_IFS=$IFS; IFS=$PATH_SEPARATOR for as_dir in $PATH do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then ac_cv_prog_LIPO="${ac_tool_prefix}lipo" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 fi done done IFS=$as_save_IFS fi fi LIPO=$ac_cv_prog_LIPO if test -n "$LIPO"; then { $as_echo "$as_me:${as_lineno-$LINENO}: result: $LIPO" >&5 $as_echo "$LIPO" >&6; } else { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 $as_echo "no" >&6; } fi fi if test -z "$ac_cv_prog_LIPO"; then ac_ct_LIPO=$LIPO # Extract the first word of "lipo", so it can be a program name with args. set dummy lipo; ac_word=$2 { $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 $as_echo_n "checking for $ac_word... " >&6; } if ${ac_cv_prog_ac_ct_LIPO+:} false; then : $as_echo_n "(cached) " >&6 else if test -n "$ac_ct_LIPO"; then ac_cv_prog_ac_ct_LIPO="$ac_ct_LIPO" # Let the user override the test. else as_save_IFS=$IFS; IFS=$PATH_SEPARATOR for as_dir in $PATH do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then ac_cv_prog_ac_ct_LIPO="lipo" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 fi done done IFS=$as_save_IFS fi fi ac_ct_LIPO=$ac_cv_prog_ac_ct_LIPO if test -n "$ac_ct_LIPO"; then { $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_ct_LIPO" >&5 $as_echo "$ac_ct_LIPO" >&6; } else { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 $as_echo "no" >&6; } fi if test "x$ac_ct_LIPO" = x; then LIPO=":" else case $cross_compiling:$ac_tool_warned in yes:) { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: using cross tools not prefixed with host triplet" >&5 $as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;} ac_tool_warned=yes ;; esac LIPO=$ac_ct_LIPO fi else LIPO="$ac_cv_prog_LIPO" fi if test -n "$ac_tool_prefix"; then # Extract the first word of "${ac_tool_prefix}otool", so it can be a program name with args. set dummy ${ac_tool_prefix}otool; ac_word=$2 { $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 $as_echo_n "checking for $ac_word... " >&6; } if ${ac_cv_prog_OTOOL+:} false; then : $as_echo_n "(cached) " >&6 else if test -n "$OTOOL"; then ac_cv_prog_OTOOL="$OTOOL" # Let the user override the test. else as_save_IFS=$IFS; IFS=$PATH_SEPARATOR for as_dir in $PATH do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then ac_cv_prog_OTOOL="${ac_tool_prefix}otool" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 fi done done IFS=$as_save_IFS fi fi OTOOL=$ac_cv_prog_OTOOL if test -n "$OTOOL"; then { $as_echo "$as_me:${as_lineno-$LINENO}: result: $OTOOL" >&5 $as_echo "$OTOOL" >&6; } else { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 $as_echo "no" >&6; } fi fi if test -z "$ac_cv_prog_OTOOL"; then ac_ct_OTOOL=$OTOOL # Extract the first word of "otool", so it can be a program name with args. set dummy otool; ac_word=$2 { $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 $as_echo_n "checking for $ac_word... " >&6; } if ${ac_cv_prog_ac_ct_OTOOL+:} false; then : $as_echo_n "(cached) " >&6 else if test -n "$ac_ct_OTOOL"; then ac_cv_prog_ac_ct_OTOOL="$ac_ct_OTOOL" # Let the user override the test. else as_save_IFS=$IFS; IFS=$PATH_SEPARATOR for as_dir in $PATH do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then ac_cv_prog_ac_ct_OTOOL="otool" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 fi done done IFS=$as_save_IFS fi fi ac_ct_OTOOL=$ac_cv_prog_ac_ct_OTOOL if test -n "$ac_ct_OTOOL"; then { $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_ct_OTOOL" >&5 $as_echo "$ac_ct_OTOOL" >&6; } else { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 $as_echo "no" >&6; } fi if test "x$ac_ct_OTOOL" = x; then OTOOL=":" else case $cross_compiling:$ac_tool_warned in yes:) { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: using cross tools not prefixed with host triplet" >&5 $as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;} ac_tool_warned=yes ;; esac OTOOL=$ac_ct_OTOOL fi else OTOOL="$ac_cv_prog_OTOOL" fi if test -n "$ac_tool_prefix"; then # Extract the first word of "${ac_tool_prefix}otool64", so it can be a program name with args. set dummy ${ac_tool_prefix}otool64; ac_word=$2 { $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 $as_echo_n "checking for $ac_word... " >&6; } if ${ac_cv_prog_OTOOL64+:} false; then : $as_echo_n "(cached) " >&6 else if test -n "$OTOOL64"; then ac_cv_prog_OTOOL64="$OTOOL64" # Let the user override the test. else as_save_IFS=$IFS; IFS=$PATH_SEPARATOR for as_dir in $PATH do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then ac_cv_prog_OTOOL64="${ac_tool_prefix}otool64" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 fi done done IFS=$as_save_IFS fi fi OTOOL64=$ac_cv_prog_OTOOL64 if test -n "$OTOOL64"; then { $as_echo "$as_me:${as_lineno-$LINENO}: result: $OTOOL64" >&5 $as_echo "$OTOOL64" >&6; } else { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 $as_echo "no" >&6; } fi fi if test -z "$ac_cv_prog_OTOOL64"; then ac_ct_OTOOL64=$OTOOL64 # Extract the first word of "otool64", so it can be a program name with args. set dummy otool64; ac_word=$2 { $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 $as_echo_n "checking for $ac_word... " >&6; } if ${ac_cv_prog_ac_ct_OTOOL64+:} false; then : $as_echo_n "(cached) " >&6 else if test -n "$ac_ct_OTOOL64"; then ac_cv_prog_ac_ct_OTOOL64="$ac_ct_OTOOL64" # Let the user override the test. else as_save_IFS=$IFS; IFS=$PATH_SEPARATOR for as_dir in $PATH do IFS=$as_save_IFS test -z "$as_dir" && as_dir=. for ac_exec_ext in '' $ac_executable_extensions; do if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then ac_cv_prog_ac_ct_OTOOL64="otool64" $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 break 2 fi done done IFS=$as_save_IFS fi fi ac_ct_OTOOL64=$ac_cv_prog_ac_ct_OTOOL64 if test -n "$ac_ct_OTOOL64"; then { $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_ct_OTOOL64" >&5 $as_echo "$ac_ct_OTOOL64" >&6; } else { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 $as_echo "no" >&6; } fi if test "x$ac_ct_OTOOL64" = x; then OTOOL64=":" else case $cross_compiling:$ac_tool_warned in yes:) { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: using cross tools not prefixed with host triplet" >&5 $as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;} ac_tool_warned=yes ;; esac OTOOL64=$ac_ct_OTOOL64 fi else OTOOL64="$ac_cv_prog_OTOOL64" fi { $as_echo "$as_me:${as_lineno-$LINENO}: checking for -single_module linker flag" >&5 $as_echo_n "checking for -single_module linker flag... " >&6; } if ${lt_cv_apple_cc_single_mod+:} false; then : $as_echo_n "(cached) " >&6 else lt_cv_apple_cc_single_mod=no if test -z "${LT_MULTI_MODULE}"; then # By default we will add the -single_module flag. 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Therefore, libtool *** is disabling shared libraries support. We urge you to upgrade GNU *** binutils to release 2.9.1 or newer. Another option is to modify *** your PATH or compiler configuration so that the native linker is *** used, and then restart. _LT_EOF elif $LD --help 2>&1 | $GREP ': supported targets:.* elf' > /dev/null; then archive_cmds='$CC -shared $pic_flag $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname -o $lib' archive_expsym_cmds='$CC -shared $pic_flag $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname ${wl}-retain-symbols-file $wl$export_symbols -o $lib' else ld_shlibs=no fi ;; sysv5* | sco3.2v5* | sco5v6* | unixware* | OpenUNIX*) case `$LD -v 2>&1` in *\ [01].* | *\ 2.[0-9].* | *\ 2.1[0-5].*) ld_shlibs=no cat <<_LT_EOF 1>&2 *** Warning: Releases of the GNU linker prior to 2.16.91.0.3 can not *** reliably create shared libraries on SCO systems. Therefore, libtool *** is disabling shared libraries support. We urge you to upgrade GNU *** binutils to release 2.16.91.0.3 or newer. Another option is to modify *** your PATH or compiler configuration so that the native linker is *** used, and then restart. _LT_EOF ;; *) # For security reasons, it is highly recommended that you always # use absolute paths for naming shared libraries, and exclude the # DT_RUNPATH tag from executables and libraries. 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then lt_cv_aix_libpath_=`dump -HX64 conftest$ac_exeext 2>/dev/null | $SED -n -e "$lt_aix_libpath_sed"` fi fi rm -f core conftest.err conftest.$ac_objext \ conftest$ac_exeext conftest.$ac_ext if test -z "$lt_cv_aix_libpath_"; then lt_cv_aix_libpath_="/usr/lib:/lib" fi fi aix_libpath=$lt_cv_aix_libpath_ fi hardcode_libdir_flag_spec='${wl}-blibpath:$libdir:'"$aix_libpath" archive_expsym_cmds='$CC -o $output_objdir/$soname $libobjs $deplibs '"\${wl}$no_entry_flag"' $compiler_flags `if test "x${allow_undefined_flag}" != "x"; then func_echo_all "${wl}${allow_undefined_flag}"; else :; fi` '"\${wl}$exp_sym_flag:\$export_symbols $shared_flag" else if test "$host_cpu" = ia64; then hardcode_libdir_flag_spec='${wl}-R $libdir:/usr/lib:/lib' allow_undefined_flag="-z nodefs" archive_expsym_cmds="\$CC $shared_flag"' -o $output_objdir/$soname $libobjs $deplibs '"\${wl}$no_entry_flag"' $compiler_flags ${wl}${allow_undefined_flag} '"\${wl}$exp_sym_flag:\$export_symbols" else # Determine the default libpath from the value encoded in an # empty executable. if test "${lt_cv_aix_libpath+set}" = set; 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then # We only use this code for GNU lds that support --whole-archive. whole_archive_flag_spec='${wl}--whole-archive$convenience ${wl}--no-whole-archive' else # Exported symbols can be pulled into shared objects from archives whole_archive_flag_spec='$convenience' fi archive_cmds_need_lc=yes # This is similar to how AIX traditionally builds its shared libraries. archive_expsym_cmds="\$CC $shared_flag"' -o $output_objdir/$soname $libobjs $deplibs ${wl}-bnoentry $compiler_flags ${wl}-bE:$export_symbols${allow_undefined_flag}~$AR $AR_FLAGS $output_objdir/$libname$release.a $output_objdir/$soname' fi fi ;; amigaos*) case $host_cpu in powerpc) # see comment about AmigaOS4 .so support archive_cmds='$CC -shared $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname -o $lib' archive_expsym_cmds='' ;; m68k) archive_cmds='$RM $output_objdir/a2ixlibrary.data~$ECHO "#define NAME $libname" > $output_objdir/a2ixlibrary.data~$ECHO "#define LIBRARY_ID 1" >> $output_objdir/a2ixlibrary.data~$ECHO "#define VERSION $major" >> $output_objdir/a2ixlibrary.data~$ECHO "#define REVISION $revision" >> $output_objdir/a2ixlibrary.data~$AR $AR_FLAGS $lib $libobjs~$RANLIB $lib~(cd $output_objdir && a2ixlibrary -32)' hardcode_libdir_flag_spec='-L$libdir' hardcode_minus_L=yes ;; esac ;; bsdi[45]*) export_dynamic_flag_spec=-rdynamic ;; cygwin* | mingw* | pw32* | cegcc*) # When not using gcc, we currently assume that we are using # Microsoft Visual C++. # hardcode_libdir_flag_spec is actually meaningless, as there is # no search path for DLLs. case $cc_basename in cl*) # Native MSVC hardcode_libdir_flag_spec=' ' allow_undefined_flag=unsupported always_export_symbols=yes file_list_spec='@' # Tell ltmain to make .lib files, not .a files. libext=lib # Tell ltmain to make .dll files, not .so files. shrext_cmds=".dll" # FIXME: Setting linknames here is a bad hack. archive_cmds='$CC -o $output_objdir/$soname $libobjs $compiler_flags $deplibs -Wl,-dll~linknames=' archive_expsym_cmds='if test "x`$SED 1q $export_symbols`" = xEXPORTS; then sed -n -e 's/\\\\\\\(.*\\\\\\\)/-link\\\ -EXPORT:\\\\\\\1/' -e '1\\\!p' < $export_symbols > $output_objdir/$soname.exp; else sed -e 's/\\\\\\\(.*\\\\\\\)/-link\\\ -EXPORT:\\\\\\\1/' < $export_symbols > $output_objdir/$soname.exp; fi~ $CC -o $tool_output_objdir$soname $libobjs $compiler_flags $deplibs "@$tool_output_objdir$soname.exp" -Wl,-DLL,-IMPLIB:"$tool_output_objdir$libname.dll.lib"~ linknames=' # The linker will not automatically build a static lib if we build a DLL. # _LT_TAGVAR(old_archive_from_new_cmds, )='true' enable_shared_with_static_runtimes=yes exclude_expsyms='_NULL_IMPORT_DESCRIPTOR|_IMPORT_DESCRIPTOR_.*' export_symbols_cmds='$NM $libobjs $convenience | $global_symbol_pipe | $SED -e '\''/^[BCDGRS][ ]/s/.*[ ]\([^ ]*\)/\1,DATA/'\'' | $SED -e '\''/^[AITW][ ]/s/.*[ ]//'\'' | sort | uniq > $export_symbols' # Don't use ranlib old_postinstall_cmds='chmod 644 $oldlib' postlink_cmds='lt_outputfile="@OUTPUT@"~ lt_tool_outputfile="@TOOL_OUTPUT@"~ case $lt_outputfile in *.exe|*.EXE) ;; *) lt_outputfile="$lt_outputfile.exe" lt_tool_outputfile="$lt_tool_outputfile.exe" ;; esac~ if test "$MANIFEST_TOOL" != ":" && test -f "$lt_outputfile.manifest"; then $MANIFEST_TOOL -manifest "$lt_tool_outputfile.manifest" -outputresource:"$lt_tool_outputfile" || exit 1; $RM "$lt_outputfile.manifest"; fi' ;; *) # Assume MSVC wrapper hardcode_libdir_flag_spec=' ' allow_undefined_flag=unsupported # Tell ltmain to make .lib files, not .a files. libext=lib # Tell ltmain to make .dll files, not .so files. shrext_cmds=".dll" # FIXME: Setting linknames here is a bad hack. archive_cmds='$CC -o $lib $libobjs $compiler_flags `func_echo_all "$deplibs" | $SED '\''s/ -lc$//'\''` -link -dll~linknames=' # The linker will automatically build a .lib file if we build a DLL. old_archive_from_new_cmds='true' # FIXME: Should let the user specify the lib program. old_archive_cmds='lib -OUT:$oldlib$oldobjs$old_deplibs' enable_shared_with_static_runtimes=yes ;; esac ;; darwin* | rhapsody*) archive_cmds_need_lc=no hardcode_direct=no hardcode_automatic=yes hardcode_shlibpath_var=unsupported if test "$lt_cv_ld_force_load" = "yes"; then whole_archive_flag_spec='`for conv in $convenience\"\"; do test -n \"$conv\" && new_convenience=\"$new_convenience ${wl}-force_load,$conv\"; done; func_echo_all \"$new_convenience\"`' else whole_archive_flag_spec='' fi link_all_deplibs=yes allow_undefined_flag="$_lt_dar_allow_undefined" case $cc_basename in ifort*) _lt_dar_can_shared=yes ;; *) _lt_dar_can_shared=$GCC ;; esac if test "$_lt_dar_can_shared" = "yes"; then output_verbose_link_cmd=func_echo_all archive_cmds="\$CC -dynamiclib \$allow_undefined_flag -o \$lib \$libobjs \$deplibs \$compiler_flags -install_name \$rpath/\$soname \$verstring $_lt_dar_single_mod${_lt_dsymutil}" module_cmds="\$CC \$allow_undefined_flag -o \$lib -bundle \$libobjs \$deplibs \$compiler_flags${_lt_dsymutil}" archive_expsym_cmds="sed 's,^,_,' < \$export_symbols > \$output_objdir/\${libname}-symbols.expsym~\$CC -dynamiclib \$allow_undefined_flag -o \$lib \$libobjs \$deplibs \$compiler_flags -install_name \$rpath/\$soname \$verstring ${_lt_dar_single_mod}${_lt_dar_export_syms}${_lt_dsymutil}" module_expsym_cmds="sed -e 's,^,_,' < \$export_symbols > \$output_objdir/\${libname}-symbols.expsym~\$CC \$allow_undefined_flag -o \$lib -bundle \$libobjs \$deplibs \$compiler_flags${_lt_dar_export_syms}${_lt_dsymutil}" else ld_shlibs=no fi ;; dgux*) archive_cmds='$LD -G -h $soname -o $lib $libobjs $deplibs $linker_flags' hardcode_libdir_flag_spec='-L$libdir' hardcode_shlibpath_var=no ;; # FreeBSD 2.2.[012] allows us to include c++rt0.o to get C++ constructor # support. Future versions do this automatically, but an explicit c++rt0.o # does not break anything, and helps significantly (at the cost of a little # extra space). freebsd2.2*) archive_cmds='$LD -Bshareable -o $lib $libobjs $deplibs $linker_flags /usr/lib/c++rt0.o' hardcode_libdir_flag_spec='-R$libdir' hardcode_direct=yes hardcode_shlibpath_var=no ;; # Unfortunately, older versions of FreeBSD 2 do not have this feature. freebsd2.*) archive_cmds='$LD -Bshareable -o $lib $libobjs $deplibs $linker_flags' hardcode_direct=yes hardcode_minus_L=yes hardcode_shlibpath_var=no ;; # FreeBSD 3 and greater uses gcc -shared to do shared libraries. freebsd* | dragonfly*) archive_cmds='$CC -shared $pic_flag -o $lib $libobjs $deplibs $compiler_flags' hardcode_libdir_flag_spec='-R$libdir' hardcode_direct=yes hardcode_shlibpath_var=no ;; hpux9*) if test "$GCC" = yes; then archive_cmds='$RM $output_objdir/$soname~$CC -shared $pic_flag ${wl}+b ${wl}$install_libdir -o $output_objdir/$soname $libobjs $deplibs $compiler_flags~test $output_objdir/$soname = $lib || mv $output_objdir/$soname $lib' else archive_cmds='$RM $output_objdir/$soname~$LD -b +b $install_libdir -o $output_objdir/$soname $libobjs $deplibs $linker_flags~test $output_objdir/$soname = $lib || mv $output_objdir/$soname $lib' fi hardcode_libdir_flag_spec='${wl}+b ${wl}$libdir' hardcode_libdir_separator=: hardcode_direct=yes # hardcode_minus_L: Not really in the search PATH, # but as the default location of the library. hardcode_minus_L=yes export_dynamic_flag_spec='${wl}-E' ;; hpux10*) if test "$GCC" = yes && test "$with_gnu_ld" = no; then archive_cmds='$CC -shared $pic_flag ${wl}+h ${wl}$soname ${wl}+b ${wl}$install_libdir -o $lib $libobjs $deplibs $compiler_flags' else archive_cmds='$LD -b +h $soname +b $install_libdir -o $lib $libobjs $deplibs $linker_flags' fi if test "$with_gnu_ld" = no; then hardcode_libdir_flag_spec='${wl}+b ${wl}$libdir' hardcode_libdir_separator=: hardcode_direct=yes hardcode_direct_absolute=yes export_dynamic_flag_spec='${wl}-E' # hardcode_minus_L: Not really in the search PATH, # but as the default location of the library. hardcode_minus_L=yes fi ;; hpux11*) if test "$GCC" = yes && test "$with_gnu_ld" = no; then case $host_cpu in hppa*64*) archive_cmds='$CC -shared ${wl}+h ${wl}$soname -o $lib $libobjs $deplibs $compiler_flags' ;; ia64*) archive_cmds='$CC -shared $pic_flag ${wl}+h ${wl}$soname ${wl}+nodefaultrpath -o $lib $libobjs $deplibs $compiler_flags' ;; *) archive_cmds='$CC -shared $pic_flag ${wl}+h ${wl}$soname ${wl}+b ${wl}$install_libdir -o $lib $libobjs $deplibs $compiler_flags' ;; esac else case $host_cpu in hppa*64*) archive_cmds='$CC -b ${wl}+h ${wl}$soname -o $lib $libobjs $deplibs $compiler_flags' ;; ia64*) archive_cmds='$CC -b ${wl}+h ${wl}$soname ${wl}+nodefaultrpath -o $lib $libobjs $deplibs $compiler_flags' ;; *) # Older versions of the 11.00 compiler do not understand -b yet # (HP92453-01 A.11.01.20 doesn't, HP92453-01 B.11.X.35175-35176.GP does) { $as_echo "$as_me:${as_lineno-$LINENO}: checking if $CC understands -b" >&5 $as_echo_n "checking if $CC understands -b... " >&6; } if ${lt_cv_prog_compiler__b+:} false; then : $as_echo_n "(cached) " >&6 else lt_cv_prog_compiler__b=no save_LDFLAGS="$LDFLAGS" LDFLAGS="$LDFLAGS -b" echo "$lt_simple_link_test_code" > conftest.$ac_ext if (eval $ac_link 2>conftest.err) && test -s conftest$ac_exeext; then # The linker can only warn and ignore the option if not recognized # So say no if there are warnings if test -s conftest.err; then # Append any errors to the config.log. cat conftest.err 1>&5 $ECHO "$_lt_linker_boilerplate" | $SED '/^$/d' > conftest.exp $SED '/^$/d; /^ *+/d' conftest.err >conftest.er2 if diff conftest.exp conftest.er2 >/dev/null; then lt_cv_prog_compiler__b=yes fi else lt_cv_prog_compiler__b=yes fi fi $RM -r conftest* LDFLAGS="$save_LDFLAGS" fi { $as_echo "$as_me:${as_lineno-$LINENO}: result: $lt_cv_prog_compiler__b" >&5 $as_echo "$lt_cv_prog_compiler__b" >&6; } if test x"$lt_cv_prog_compiler__b" = xyes; then archive_cmds='$CC -b ${wl}+h ${wl}$soname ${wl}+b ${wl}$install_libdir -o $lib $libobjs $deplibs $compiler_flags' else archive_cmds='$LD -b +h $soname +b $install_libdir -o $lib $libobjs $deplibs $linker_flags' fi ;; esac fi if test "$with_gnu_ld" = no; then hardcode_libdir_flag_spec='${wl}+b ${wl}$libdir' hardcode_libdir_separator=: case $host_cpu in hppa*64*|ia64*) hardcode_direct=no hardcode_shlibpath_var=no ;; *) hardcode_direct=yes hardcode_direct_absolute=yes export_dynamic_flag_spec='${wl}-E' # hardcode_minus_L: Not really in the search PATH, # but as the default location of the library. hardcode_minus_L=yes ;; esac fi ;; irix5* | irix6* | nonstopux*) if test "$GCC" = yes; then archive_cmds='$CC -shared $pic_flag $libobjs $deplibs $compiler_flags ${wl}-soname ${wl}$soname `test -n "$verstring" && func_echo_all "${wl}-set_version ${wl}$verstring"` ${wl}-update_registry ${wl}${output_objdir}/so_locations -o $lib' # Try to use the -exported_symbol ld option, if it does not # work, assume that -exports_file does not work either and # implicitly export all symbols. # This should be the same for all languages, so no per-tag cache variable. { $as_echo "$as_me:${as_lineno-$LINENO}: checking whether the $host_os linker accepts -exported_symbol" >&5 $as_echo_n "checking whether the $host_os linker accepts -exported_symbol... " >&6; } if ${lt_cv_irix_exported_symbol+:} false; then : $as_echo_n "(cached) " >&6 else save_LDFLAGS="$LDFLAGS" LDFLAGS="$LDFLAGS -shared ${wl}-exported_symbol ${wl}foo ${wl}-update_registry ${wl}/dev/null" cat confdefs.h - <<_ACEOF >conftest.$ac_ext /* end confdefs.h. */ int foo (void) { return 0; } _ACEOF if ac_fn_c_try_link "$LINENO"; then : lt_cv_irix_exported_symbol=yes else lt_cv_irix_exported_symbol=no fi rm -f core conftest.err conftest.$ac_objext \ conftest$ac_exeext conftest.$ac_ext LDFLAGS="$save_LDFLAGS" fi { $as_echo "$as_me:${as_lineno-$LINENO}: result: $lt_cv_irix_exported_symbol" >&5 $as_echo "$lt_cv_irix_exported_symbol" >&6; } if test "$lt_cv_irix_exported_symbol" = yes; then archive_expsym_cmds='$CC -shared $pic_flag $libobjs $deplibs $compiler_flags ${wl}-soname ${wl}$soname `test -n "$verstring" && func_echo_all "${wl}-set_version ${wl}$verstring"` ${wl}-update_registry ${wl}${output_objdir}/so_locations ${wl}-exports_file ${wl}$export_symbols -o $lib' fi else archive_cmds='$CC -shared $libobjs $deplibs $compiler_flags -soname $soname `test -n "$verstring" && func_echo_all "-set_version $verstring"` -update_registry ${output_objdir}/so_locations -o $lib' archive_expsym_cmds='$CC -shared $libobjs $deplibs $compiler_flags -soname $soname `test -n "$verstring" && func_echo_all "-set_version $verstring"` -update_registry ${output_objdir}/so_locations -exports_file $export_symbols -o $lib' fi archive_cmds_need_lc='no' hardcode_libdir_flag_spec='${wl}-rpath ${wl}$libdir' hardcode_libdir_separator=: inherit_rpath=yes link_all_deplibs=yes ;; netbsd* | netbsdelf*-gnu) if echo __ELF__ | $CC -E - | $GREP __ELF__ >/dev/null; then archive_cmds='$LD -Bshareable -o $lib $libobjs $deplibs $linker_flags' # a.out else archive_cmds='$LD -shared -o $lib $libobjs $deplibs $linker_flags' # ELF fi hardcode_libdir_flag_spec='-R$libdir' hardcode_direct=yes hardcode_shlibpath_var=no ;; newsos6) archive_cmds='$LD -G -h $soname -o $lib $libobjs $deplibs $linker_flags' hardcode_direct=yes hardcode_libdir_flag_spec='${wl}-rpath ${wl}$libdir' hardcode_libdir_separator=: hardcode_shlibpath_var=no ;; *nto* | *qnx*) ;; openbsd*) if test -f /usr/libexec/ld.so; then hardcode_direct=yes hardcode_shlibpath_var=no hardcode_direct_absolute=yes if test -z "`echo __ELF__ | $CC -E - | $GREP __ELF__`" || test "$host_os-$host_cpu" = "openbsd2.8-powerpc"; then archive_cmds='$CC -shared $pic_flag -o $lib $libobjs $deplibs $compiler_flags' archive_expsym_cmds='$CC -shared $pic_flag -o $lib $libobjs $deplibs $compiler_flags ${wl}-retain-symbols-file,$export_symbols' hardcode_libdir_flag_spec='${wl}-rpath,$libdir' export_dynamic_flag_spec='${wl}-E' else case $host_os in openbsd[01].* | openbsd2.[0-7] | openbsd2.[0-7].*) archive_cmds='$LD -Bshareable -o $lib $libobjs $deplibs $linker_flags' hardcode_libdir_flag_spec='-R$libdir' ;; *) archive_cmds='$CC -shared $pic_flag -o $lib $libobjs $deplibs $compiler_flags' hardcode_libdir_flag_spec='${wl}-rpath,$libdir' ;; esac fi else ld_shlibs=no fi ;; os2*) hardcode_libdir_flag_spec='-L$libdir' hardcode_minus_L=yes allow_undefined_flag=unsupported archive_cmds='$ECHO "LIBRARY $libname INITINSTANCE" > $output_objdir/$libname.def~$ECHO "DESCRIPTION \"$libname\"" >> $output_objdir/$libname.def~echo DATA >> $output_objdir/$libname.def~echo " SINGLE NONSHARED" >> $output_objdir/$libname.def~echo EXPORTS >> $output_objdir/$libname.def~emxexp $libobjs >> $output_objdir/$libname.def~$CC -Zdll -Zcrtdll -o $lib $libobjs $deplibs $compiler_flags $output_objdir/$libname.def' old_archive_from_new_cmds='emximp -o $output_objdir/$libname.a $output_objdir/$libname.def' ;; osf3*) if test "$GCC" = yes; then allow_undefined_flag=' ${wl}-expect_unresolved ${wl}\*' archive_cmds='$CC -shared${allow_undefined_flag} $libobjs $deplibs $compiler_flags ${wl}-soname ${wl}$soname `test -n "$verstring" && func_echo_all "${wl}-set_version ${wl}$verstring"` ${wl}-update_registry ${wl}${output_objdir}/so_locations -o $lib' else allow_undefined_flag=' -expect_unresolved \*' archive_cmds='$CC -shared${allow_undefined_flag} $libobjs $deplibs $compiler_flags -soname $soname `test -n "$verstring" && func_echo_all "-set_version $verstring"` -update_registry ${output_objdir}/so_locations -o $lib' fi archive_cmds_need_lc='no' hardcode_libdir_flag_spec='${wl}-rpath ${wl}$libdir' hardcode_libdir_separator=: ;; osf4* | osf5*) # as osf3* with the addition of -msym flag if test "$GCC" = yes; then allow_undefined_flag=' ${wl}-expect_unresolved ${wl}\*' archive_cmds='$CC -shared${allow_undefined_flag} $pic_flag $libobjs $deplibs $compiler_flags ${wl}-msym ${wl}-soname ${wl}$soname `test -n "$verstring" && func_echo_all "${wl}-set_version ${wl}$verstring"` ${wl}-update_registry ${wl}${output_objdir}/so_locations -o $lib' hardcode_libdir_flag_spec='${wl}-rpath ${wl}$libdir' else allow_undefined_flag=' -expect_unresolved \*' archive_cmds='$CC -shared${allow_undefined_flag} $libobjs $deplibs $compiler_flags -msym -soname $soname `test -n "$verstring" && func_echo_all "-set_version $verstring"` -update_registry ${output_objdir}/so_locations -o $lib' archive_expsym_cmds='for i in `cat $export_symbols`; do printf "%s %s\\n" -exported_symbol "\$i" >> $lib.exp; done; printf "%s\\n" "-hidden">> $lib.exp~ $CC -shared${allow_undefined_flag} ${wl}-input ${wl}$lib.exp $compiler_flags $libobjs $deplibs -soname $soname `test -n "$verstring" && $ECHO "-set_version $verstring"` -update_registry ${output_objdir}/so_locations -o $lib~$RM $lib.exp' # Both c and cxx compiler support -rpath directly hardcode_libdir_flag_spec='-rpath $libdir' fi archive_cmds_need_lc='no' hardcode_libdir_separator=: ;; solaris*) no_undefined_flag=' -z defs' if test "$GCC" = yes; then wlarc='${wl}' archive_cmds='$CC -shared $pic_flag ${wl}-z ${wl}text ${wl}-h ${wl}$soname -o $lib $libobjs $deplibs $compiler_flags' archive_expsym_cmds='echo "{ global:" > $lib.exp~cat $export_symbols | $SED -e "s/\(.*\)/\1;/" >> $lib.exp~echo "local: *; };" >> $lib.exp~ $CC -shared $pic_flag ${wl}-z ${wl}text ${wl}-M ${wl}$lib.exp ${wl}-h ${wl}$soname -o $lib $libobjs $deplibs $compiler_flags~$RM $lib.exp' else case `$CC -V 2>&1` in *"Compilers 5.0"*) wlarc='' archive_cmds='$LD -G${allow_undefined_flag} -h $soname -o $lib $libobjs $deplibs $linker_flags' archive_expsym_cmds='echo "{ global:" > $lib.exp~cat $export_symbols | $SED -e "s/\(.*\)/\1;/" >> $lib.exp~echo "local: *; };" >> $lib.exp~ $LD -G${allow_undefined_flag} -M $lib.exp -h $soname -o $lib $libobjs $deplibs $linker_flags~$RM $lib.exp' ;; *) wlarc='${wl}' archive_cmds='$CC -G${allow_undefined_flag} -h $soname -o $lib $libobjs $deplibs $compiler_flags' archive_expsym_cmds='echo "{ global:" > $lib.exp~cat $export_symbols | $SED -e "s/\(.*\)/\1;/" >> $lib.exp~echo "local: *; };" >> $lib.exp~ $CC -G${allow_undefined_flag} -M $lib.exp -h $soname -o $lib $libobjs $deplibs $compiler_flags~$RM $lib.exp' ;; esac fi hardcode_libdir_flag_spec='-R$libdir' hardcode_shlibpath_var=no case $host_os in solaris2.[0-5] | solaris2.[0-5].*) ;; *) # The compiler driver will combine and reorder linker options, # but understands `-z linker_flag'. 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then sys_lib_search_path_spec="/usr/lib/hpux32 /usr/local/lib/hpux32 /usr/local/lib" else sys_lib_search_path_spec="/usr/lib/hpux64 /usr/local/lib/hpux64" fi sys_lib_dlsearch_path_spec=$sys_lib_search_path_spec ;; hppa*64*) shrext_cmds='.sl' hardcode_into_libs=yes dynamic_linker="$host_os dld.sl" shlibpath_var=LD_LIBRARY_PATH # How should we handle SHLIB_PATH shlibpath_overrides_runpath=yes # Unless +noenvvar is specified. library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}' soname_spec='${libname}${release}${shared_ext}$major' sys_lib_search_path_spec="/usr/lib/pa20_64 /usr/ccs/lib/pa20_64" sys_lib_dlsearch_path_spec=$sys_lib_search_path_spec ;; *) shrext_cmds='.sl' dynamic_linker="$host_os dld.sl" shlibpath_var=SHLIB_PATH shlibpath_overrides_runpath=no # +s is required to enable SHLIB_PATH library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}' soname_spec='${libname}${release}${shared_ext}$major' ;; esac # HP-UX runs *really* slowly unless shared libraries are mode 555, ... postinstall_cmds='chmod 555 $lib' # or fails outright, so override atomically: install_override_mode=555 ;; interix[3-9]*) version_type=linux # correct to gnu/linux during the next big refactor need_lib_prefix=no need_version=no library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major ${libname}${shared_ext}' soname_spec='${libname}${release}${shared_ext}$major' dynamic_linker='Interix 3.x ld.so.1 (PE, like ELF)' shlibpath_var=LD_LIBRARY_PATH shlibpath_overrides_runpath=no hardcode_into_libs=yes ;; irix5* | irix6* | nonstopux*) case $host_os in nonstopux*) version_type=nonstopux ;; *) if test "$lt_cv_prog_gnu_ld" = yes; then version_type=linux # correct to gnu/linux during the next big refactor else version_type=irix fi ;; esac need_lib_prefix=no need_version=no soname_spec='${libname}${release}${shared_ext}$major' library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major ${libname}${release}${shared_ext} $libname${shared_ext}' case $host_os in irix5* | nonstopux*) libsuff= shlibsuff= ;; *) case $LD in # libtool.m4 will add one of these switches to LD *-32|*"-32 "|*-melf32bsmip|*"-melf32bsmip ") libsuff= shlibsuff= libmagic=32-bit;; *-n32|*"-n32 "|*-melf32bmipn32|*"-melf32bmipn32 ") libsuff=32 shlibsuff=N32 libmagic=N32;; *-64|*"-64 "|*-melf64bmip|*"-melf64bmip ") libsuff=64 shlibsuff=64 libmagic=64-bit;; *) libsuff= shlibsuff= libmagic=never-match;; esac ;; esac shlibpath_var=LD_LIBRARY${shlibsuff}_PATH shlibpath_overrides_runpath=no sys_lib_search_path_spec="/usr/lib${libsuff} /lib${libsuff} /usr/local/lib${libsuff}" sys_lib_dlsearch_path_spec="/usr/lib${libsuff} /lib${libsuff}" hardcode_into_libs=yes ;; # No shared lib support for Linux oldld, aout, or coff. linux*oldld* | linux*aout* | linux*coff*) dynamic_linker=no ;; # This must be glibc/ELF. linux* | k*bsd*-gnu | kopensolaris*-gnu) version_type=linux # correct to gnu/linux during the next big refactor need_lib_prefix=no need_version=no library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}' soname_spec='${libname}${release}${shared_ext}$major' finish_cmds='PATH="\$PATH:/sbin" ldconfig -n $libdir' shlibpath_var=LD_LIBRARY_PATH shlibpath_overrides_runpath=no # Some binutils ld are patched to set DT_RUNPATH if ${lt_cv_shlibpath_overrides_runpath+:} false; then : $as_echo_n "(cached) " >&6 else lt_cv_shlibpath_overrides_runpath=no save_LDFLAGS=$LDFLAGS save_libdir=$libdir eval "libdir=/foo; wl=\"$lt_prog_compiler_wl\"; \ LDFLAGS=\"\$LDFLAGS $hardcode_libdir_flag_spec\"" cat confdefs.h - <<_ACEOF >conftest.$ac_ext /* end confdefs.h. */ int main () { ; return 0; } _ACEOF if ac_fn_c_try_link "$LINENO"; then : if ($OBJDUMP -p conftest$ac_exeext) 2>/dev/null | grep "RUNPATH.*$libdir" >/dev/null; then : lt_cv_shlibpath_overrides_runpath=yes fi fi rm -f core conftest.err conftest.$ac_objext \ conftest$ac_exeext conftest.$ac_ext LDFLAGS=$save_LDFLAGS libdir=$save_libdir fi shlibpath_overrides_runpath=$lt_cv_shlibpath_overrides_runpath # This implies no fast_install, which is unacceptable. # Some rework will be needed to allow for fast_install # before this can be enabled. hardcode_into_libs=yes # Append ld.so.conf contents to the search path if test -f /etc/ld.so.conf; then lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s 2>/dev/null", \$2)); skip = 1; } { if (!skip) print \$0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;/^[ ]*hwcap[ ]/d;s/[:, ]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;s/"//g;/^$/d' | tr '\n' ' '` sys_lib_dlsearch_path_spec="/lib /usr/lib $lt_ld_extra" fi # We used to test for /lib/ld.so.1 and disable shared libraries on # powerpc, because MkLinux only supported shared libraries with the # GNU dynamic linker. Since this was broken with cross compilers, # most powerpc-linux boxes support dynamic linking these days and # people can always --disable-shared, the test was removed, and we # assume the GNU/Linux dynamic linker is in use. dynamic_linker='GNU/Linux ld.so' ;; netbsdelf*-gnu) version_type=linux need_lib_prefix=no need_version=no library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major ${libname}${shared_ext}' soname_spec='${libname}${release}${shared_ext}$major' shlibpath_var=LD_LIBRARY_PATH shlibpath_overrides_runpath=no hardcode_into_libs=yes dynamic_linker='NetBSD ld.elf_so' ;; netbsd*) version_type=sunos need_lib_prefix=no need_version=no if echo __ELF__ | $CC -E - | $GREP __ELF__ >/dev/null; then library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${shared_ext}$versuffix' finish_cmds='PATH="\$PATH:/sbin" ldconfig -m $libdir' dynamic_linker='NetBSD (a.out) ld.so' else library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major ${libname}${shared_ext}' soname_spec='${libname}${release}${shared_ext}$major' dynamic_linker='NetBSD ld.elf_so' fi shlibpath_var=LD_LIBRARY_PATH shlibpath_overrides_runpath=yes hardcode_into_libs=yes ;; newsos6) version_type=linux # correct to gnu/linux during the next big refactor library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}' shlibpath_var=LD_LIBRARY_PATH shlibpath_overrides_runpath=yes ;; *nto* | *qnx*) version_type=qnx need_lib_prefix=no need_version=no library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}' soname_spec='${libname}${release}${shared_ext}$major' shlibpath_var=LD_LIBRARY_PATH shlibpath_overrides_runpath=no hardcode_into_libs=yes dynamic_linker='ldqnx.so' ;; openbsd*) version_type=sunos sys_lib_dlsearch_path_spec="/usr/lib" need_lib_prefix=no # Some older versions of OpenBSD (3.3 at least) *do* need versioned libs. case $host_os in openbsd3.3 | openbsd3.3.*) need_version=yes ;; *) need_version=no ;; esac library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${shared_ext}$versuffix' finish_cmds='PATH="\$PATH:/sbin" ldconfig -m $libdir' shlibpath_var=LD_LIBRARY_PATH if test -z "`echo __ELF__ | $CC -E - | $GREP __ELF__`" || test "$host_os-$host_cpu" = "openbsd2.8-powerpc"; then case $host_os in openbsd2.[89] | openbsd2.[89].*) shlibpath_overrides_runpath=no ;; *) shlibpath_overrides_runpath=yes ;; esac else shlibpath_overrides_runpath=yes fi ;; os2*) libname_spec='$name' shrext_cmds=".dll" need_lib_prefix=no library_names_spec='$libname${shared_ext} $libname.a' dynamic_linker='OS/2 ld.exe' shlibpath_var=LIBPATH ;; osf3* | osf4* | osf5*) version_type=osf need_lib_prefix=no need_version=no soname_spec='${libname}${release}${shared_ext}$major' library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}' shlibpath_var=LD_LIBRARY_PATH sys_lib_search_path_spec="/usr/shlib /usr/ccs/lib /usr/lib/cmplrs/cc /usr/lib /usr/local/lib /var/shlib" sys_lib_dlsearch_path_spec="$sys_lib_search_path_spec" ;; rdos*) dynamic_linker=no ;; solaris*) version_type=linux # correct to gnu/linux during the next big refactor need_lib_prefix=no need_version=no library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}' soname_spec='${libname}${release}${shared_ext}$major' shlibpath_var=LD_LIBRARY_PATH shlibpath_overrides_runpath=yes hardcode_into_libs=yes # ldd complains unless libraries are executable postinstall_cmds='chmod +x $lib' ;; sunos4*) version_type=sunos library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${shared_ext}$versuffix' finish_cmds='PATH="\$PATH:/usr/etc" ldconfig $libdir' shlibpath_var=LD_LIBRARY_PATH shlibpath_overrides_runpath=yes if test "$with_gnu_ld" = yes; then need_lib_prefix=no fi need_version=yes ;; sysv4 | sysv4.3*) version_type=linux # correct to gnu/linux during the next big refactor library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}' soname_spec='${libname}${release}${shared_ext}$major' shlibpath_var=LD_LIBRARY_PATH case $host_vendor in sni) shlibpath_overrides_runpath=no need_lib_prefix=no runpath_var=LD_RUN_PATH ;; siemens) need_lib_prefix=no ;; motorola) need_lib_prefix=no need_version=no shlibpath_overrides_runpath=no sys_lib_search_path_spec='/lib /usr/lib /usr/ccs/lib' ;; esac ;; sysv4*MP*) if test -d /usr/nec ;then version_type=linux # correct to gnu/linux during the next big refactor library_names_spec='$libname${shared_ext}.$versuffix $libname${shared_ext}.$major $libname${shared_ext}' soname_spec='$libname${shared_ext}.$major' shlibpath_var=LD_LIBRARY_PATH fi ;; sysv5* | sco3.2v5* | sco5v6* | unixware* | OpenUNIX* | sysv4*uw2*) version_type=freebsd-elf need_lib_prefix=no need_version=no library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext} $libname${shared_ext}' soname_spec='${libname}${release}${shared_ext}$major' shlibpath_var=LD_LIBRARY_PATH shlibpath_overrides_runpath=yes hardcode_into_libs=yes if test "$with_gnu_ld" = yes; then sys_lib_search_path_spec='/usr/local/lib /usr/gnu/lib /usr/ccs/lib /usr/lib /lib' else sys_lib_search_path_spec='/usr/ccs/lib /usr/lib' case $host_os in sco3.2v5*) sys_lib_search_path_spec="$sys_lib_search_path_spec /lib" ;; esac fi sys_lib_dlsearch_path_spec='/usr/lib' ;; tpf*) # TPF is a cross-target only. Preferred cross-host = GNU/Linux. version_type=linux # correct to gnu/linux during the next big refactor need_lib_prefix=no need_version=no library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}' shlibpath_var=LD_LIBRARY_PATH shlibpath_overrides_runpath=no hardcode_into_libs=yes ;; uts4*) version_type=linux # correct to gnu/linux during the next big refactor library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}' soname_spec='${libname}${release}${shared_ext}$major' shlibpath_var=LD_LIBRARY_PATH ;; *) dynamic_linker=no ;; esac { $as_echo "$as_me:${as_lineno-$LINENO}: result: $dynamic_linker" >&5 $as_echo "$dynamic_linker" >&6; } test "$dynamic_linker" = no && can_build_shared=no variables_saved_for_relink="PATH $shlibpath_var $runpath_var" if test "$GCC" = yes; then variables_saved_for_relink="$variables_saved_for_relink GCC_EXEC_PREFIX COMPILER_PATH LIBRARY_PATH" fi if test "${lt_cv_sys_lib_search_path_spec+set}" = set; then sys_lib_search_path_spec="$lt_cv_sys_lib_search_path_spec" fi if test "${lt_cv_sys_lib_dlsearch_path_spec+set}" = set; then sys_lib_dlsearch_path_spec="$lt_cv_sys_lib_dlsearch_path_spec" fi { $as_echo "$as_me:${as_lineno-$LINENO}: checking how to hardcode library paths into programs" >&5 $as_echo_n "checking how to hardcode library paths into programs... " >&6; } hardcode_action= if test -n "$hardcode_libdir_flag_spec" || test -n "$runpath_var" || test "X$hardcode_automatic" = "Xyes" ; then # We can hardcode non-existent directories. if test "$hardcode_direct" != no && # If the only mechanism to avoid hardcoding is shlibpath_var, we # have to relink, otherwise we might link with an installed library # when we should be linking with a yet-to-be-installed one ## test "$_LT_TAGVAR(hardcode_shlibpath_var, )" != no && test "$hardcode_minus_L" != no; then # Linking always hardcodes the temporary library directory. hardcode_action=relink else # We can link without hardcoding, and we can hardcode nonexisting dirs. hardcode_action=immediate fi else # We cannot hardcode anything, or else we can only hardcode existing # directories. hardcode_action=unsupported fi { $as_echo "$as_me:${as_lineno-$LINENO}: result: $hardcode_action" >&5 $as_echo "$hardcode_action" >&6; } if test "$hardcode_action" = relink || test "$inherit_rpath" = yes; then # Fast installation is not supported enable_fast_install=no elif test "$shlibpath_overrides_runpath" = yes || test "$enable_shared" = no; then # Fast installation is not necessary enable_fast_install=needless fi if test "x$enable_dlopen" != xyes; then enable_dlopen=unknown enable_dlopen_self=unknown enable_dlopen_self_static=unknown else lt_cv_dlopen=no lt_cv_dlopen_libs= case $host_os in beos*) lt_cv_dlopen="load_add_on" lt_cv_dlopen_libs= lt_cv_dlopen_self=yes ;; mingw* | pw32* | cegcc*) lt_cv_dlopen="LoadLibrary" lt_cv_dlopen_libs= ;; cygwin*) lt_cv_dlopen="dlopen" lt_cv_dlopen_libs= ;; darwin*) # if libdl is installed we need to link against it { $as_echo "$as_me:${as_lineno-$LINENO}: checking for dlopen in -ldl" >&5 $as_echo_n "checking for dlopen in -ldl... " >&6; } if ${ac_cv_lib_dl_dlopen+:} false; then : $as_echo_n "(cached) " >&6 else ac_check_lib_save_LIBS=$LIBS LIBS="-ldl $LIBS" cat confdefs.h - <<_ACEOF >conftest.$ac_ext /* end confdefs.h. */ /* Override any GCC internal prototype to avoid an error. Use char because int might match the return type of a GCC builtin and then its argument prototype would still apply. */ #ifdef __cplusplus extern "C" #endif char dlopen (); int main () { return dlopen (); ; return 0; } _ACEOF if ac_fn_c_try_link "$LINENO"; then : ac_cv_lib_dl_dlopen=yes else ac_cv_lib_dl_dlopen=no fi rm -f core conftest.err conftest.$ac_objext \ conftest$ac_exeext conftest.$ac_ext LIBS=$ac_check_lib_save_LIBS fi { $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_dl_dlopen" >&5 $as_echo "$ac_cv_lib_dl_dlopen" >&6; } if test "x$ac_cv_lib_dl_dlopen" = xyes; then : lt_cv_dlopen="dlopen" lt_cv_dlopen_libs="-ldl" else lt_cv_dlopen="dyld" lt_cv_dlopen_libs= lt_cv_dlopen_self=yes fi ;; *) ac_fn_c_check_func "$LINENO" "shl_load" "ac_cv_func_shl_load" if test "x$ac_cv_func_shl_load" = xyes; then : lt_cv_dlopen="shl_load" else { $as_echo "$as_me:${as_lineno-$LINENO}: checking for shl_load in -ldld" >&5 $as_echo_n "checking for shl_load in -ldld... " >&6; } if ${ac_cv_lib_dld_shl_load+:} false; then : $as_echo_n "(cached) " >&6 else ac_check_lib_save_LIBS=$LIBS LIBS="-ldld $LIBS" cat confdefs.h - <<_ACEOF >conftest.$ac_ext /* end confdefs.h. */ /* Override any GCC internal prototype to avoid an error. Use char because int might match the return type of a GCC builtin and then its argument prototype would still apply. */ #ifdef __cplusplus extern "C" #endif char shl_load (); int main () { return shl_load (); ; return 0; } _ACEOF if ac_fn_c_try_link "$LINENO"; then : ac_cv_lib_dld_shl_load=yes else ac_cv_lib_dld_shl_load=no fi rm -f core conftest.err conftest.$ac_objext \ conftest$ac_exeext conftest.$ac_ext LIBS=$ac_check_lib_save_LIBS fi { $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_dld_shl_load" >&5 $as_echo "$ac_cv_lib_dld_shl_load" >&6; } if test "x$ac_cv_lib_dld_shl_load" = xyes; then : lt_cv_dlopen="shl_load" lt_cv_dlopen_libs="-ldld" else ac_fn_c_check_func "$LINENO" "dlopen" "ac_cv_func_dlopen" if test "x$ac_cv_func_dlopen" = xyes; then : lt_cv_dlopen="dlopen" else { $as_echo "$as_me:${as_lineno-$LINENO}: checking for dlopen in -ldl" >&5 $as_echo_n "checking for dlopen in -ldl... " >&6; } if ${ac_cv_lib_dl_dlopen+:} false; then : $as_echo_n "(cached) " >&6 else ac_check_lib_save_LIBS=$LIBS LIBS="-ldl $LIBS" cat confdefs.h - <<_ACEOF >conftest.$ac_ext /* end confdefs.h. */ /* Override any GCC internal prototype to avoid an error. Use char because int might match the return type of a GCC builtin and then its argument prototype would still apply. */ #ifdef __cplusplus extern "C" #endif char dlopen (); int main () { return dlopen (); ; return 0; } _ACEOF if ac_fn_c_try_link "$LINENO"; then : ac_cv_lib_dl_dlopen=yes else ac_cv_lib_dl_dlopen=no fi rm -f core conftest.err conftest.$ac_objext \ conftest$ac_exeext conftest.$ac_ext LIBS=$ac_check_lib_save_LIBS fi { $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_dl_dlopen" >&5 $as_echo "$ac_cv_lib_dl_dlopen" >&6; } if test "x$ac_cv_lib_dl_dlopen" = xyes; then : lt_cv_dlopen="dlopen" lt_cv_dlopen_libs="-ldl" else { $as_echo "$as_me:${as_lineno-$LINENO}: checking for dlopen in -lsvld" >&5 $as_echo_n "checking for dlopen in -lsvld... " >&6; } if ${ac_cv_lib_svld_dlopen+:} false; then : $as_echo_n "(cached) " >&6 else ac_check_lib_save_LIBS=$LIBS LIBS="-lsvld $LIBS" cat confdefs.h - <<_ACEOF >conftest.$ac_ext /* end confdefs.h. */ /* Override any GCC internal prototype to avoid an error. Use char because int might match the return type of a GCC builtin and then its argument prototype would still apply. */ #ifdef __cplusplus extern "C" #endif char dlopen (); int main () { return dlopen (); ; return 0; } _ACEOF if ac_fn_c_try_link "$LINENO"; then : ac_cv_lib_svld_dlopen=yes else ac_cv_lib_svld_dlopen=no fi rm -f core conftest.err conftest.$ac_objext \ conftest$ac_exeext conftest.$ac_ext LIBS=$ac_check_lib_save_LIBS fi { $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_svld_dlopen" >&5 $as_echo "$ac_cv_lib_svld_dlopen" >&6; } if test "x$ac_cv_lib_svld_dlopen" = xyes; then : lt_cv_dlopen="dlopen" lt_cv_dlopen_libs="-lsvld" else { $as_echo "$as_me:${as_lineno-$LINENO}: checking for dld_link in -ldld" >&5 $as_echo_n "checking for dld_link in -ldld... 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When coming back to configure, we # need to make the FD available again. if test "$no_create" != yes; then ac_cs_success=: ac_config_status_args= test "$silent" = yes && ac_config_status_args="$ac_config_status_args --quiet" exec 5>/dev/null $SHELL $CONFIG_STATUS $ac_config_status_args || ac_cs_success=false exec 5>>config.log # Use ||, not &&, to avoid exiting from the if with $? = 1, which # would make configure fail if this is the last instruction. $ac_cs_success || as_fn_exit 1 fi if test -n "$ac_unrecognized_opts" && test "$enable_option_checking" != no; then { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: unrecognized options: $ac_unrecognized_opts" >&5 $as_echo "$as_me: WARNING: unrecognized options: $ac_unrecognized_opts" >&2;} fi stimfit-0.13.13/dist/0000775000175000017500000000000012275713011011303 500000000000000stimfit-0.13.13/dist/debian/0000775000175000017500000000000012275713011012525 500000000000000stimfit-0.13.13/dist/debian/copyright0000664000175000017500000000644612275677732014435 00000000000000Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Upstream-Name: stimfit Upstream-Contact: Christoph Schmidt-Hieber Source: http://code.google.com/p/stimfit/downloads/list Files: * Copyright: 2011, Christoph Schmidt-Hieber License: GPL-2+ Files: src/core/filelib/axon/* Copyright: 1993-2000, Axon Instruments License: Permission is granted to freely to use, modify and copy the code in this file. Files: src/core/filelib/axon2/* Copyright: 1993-2005, Molecular Devices 1993-2002, Axon Instruments License: Permission is granted to freely to use, modify and copy the code in this file. Files: src/core/levmar/* Copyright: 2004, Manolis Lourakis License: GPL-2+ Files: src/stfswig/numpy.i Copyright: 2005-2009, NumPy Developers License: BSD-new Files: src/test/gtest/* Copyright: 2008, Google Inc License: BSD-new License: GPL-2+ This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version. . This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. . You should have received a copy of the GNU General Public License along with this package; if not, write to the Free Software Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA . On Debian systems, the full text of the GNU General Public License version 2 can be found in the file `/usr/share/common-licenses/GPL-2'. License: BSD-new All rights reserved. . Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: . * Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. * Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution. * Neither the name of the copyright holder nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission. . THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. stimfit-0.13.13/dist/debian/control0000664000175000017500000000401412275677732014072 00000000000000Source: stimfit Section: science Priority: optional Maintainer: Christoph Schmidt-Hieber Uploaders: Yaroslav Halchenko Build-Depends: debhelper (>= 7), libboost-dev (>= 1.40.0), python-all-dev (>= 2.6.6-3), python-numpy, libhdf5-dev, swig, python-wxgtk2.8 (>= 2.8.9), libwxgtk2.8-dev (>= 2.8.9), libfftw3-dev, liblapack-dev, chrpath, help2man, libbiosig-dev, libsuitesparse-dev, dh-autoreconf Standards-Version: 3.9.4 Homepage: http://www.stimfit.org Package: stimfit Architecture: any Depends: ${shlibs:Depends}, ${misc:Depends}, ${python:Depends}, libbiosig-dev, libsuitesparse-dev, python-wxgtk2.8 (>= 2.8.9), python-numpy, python-matplotlib Recommends: python-scipy Description: Program for viewing and analyzing electrophysiological data Stimfit is a free, fast and simple program for viewing and analyzing electrophysiological data. It features an embedded Python shell that allows you to extend the program functionality by using numerical libraries such as NumPy and SciPy. Package: stimfit-dbg Section: debug Priority: extra Architecture: any Depends: ${misc:Depends}, stimfit Recommends: python-matplotlib, python-scipy, python-stfio Description: Debug symbols for stimfit Stimfit is a free, fast and simple program for viewing and analyzing electrophysiological data. It features an embedded Python shell that allows you to extend the program functionality by using numerical libraries such as NumPy and SciPy. This package contains the debug symbols for Stimfit. Package: python-stfio Section: python Architecture: any Depends: ${python:Depends}, ${shlibs:Depends}, ${misc:Depends}, libbiosig-dev, libsuitesparse-dev, python-numpy Provides: ${python:Provides} Recommends: python-matplotlib, python-scipy, python-pandas Description: Python module to read common electrophysiology file formats. The stfio module allows you to read common electrophysiology file formats from Python. Axon binaries (abf), Axon text (atf), HEKA (dat), CFS (dat/cfs), Axograph (axgd/axgx) are currently supported. stimfit-0.13.13/dist/debian/mkdeb.sh0000775000175000017500000000051412275700226014072 00000000000000#! /bin/bash VERSION=0.13.13 make dist mkdir -p ../deb/ rm -rf ../deb/* cp -v stimfit-${VERSION}.tar.gz ../deb/ cp -v stimfit-${VERSION}.tar.gz ../deb/stimfit_${VERSION}.orig.tar.gz cd ../deb/ tar -xzf stimfit_${VERSION}.orig.tar.gz cd stimfit-${VERSION} cp -rv ../../../dist/debian ./ debuild -S -sa sudo pbuilder build ../*.dsc stimfit-0.13.13/dist/debian/python-stfio.install0000664000175000017500000000011412275712656016512 00000000000000usr/lib/python*/*-packages/stfio/*.so usr/lib/python*/*-packages/stfio/*.py stimfit-0.13.13/dist/debian/docs0000664000175000017500000000002112275677732013334 00000000000000NEWS README TODO stimfit-0.13.13/dist/debian/stimfit.menu0000664000175000017500000000052112275677732015033 00000000000000?package(stimfit): needs="X11" section="Applications/Programming"\ hints="Documents"\ title="Stimfit" command="/usr/bin/stimfit"\ icon="/usr/share/pixmaps/stimfit32x32.xpm"\ icon16x16="/usr/share/pixmaps/stimfit16x16.xpm"\ icon32x32="/usr/share/pixmaps/stimfit32x32.xpm"\ longtitle="View and analyze electrophysiology files" stimfit-0.13.13/dist/debian/stimfit.10000664000175000017500000000066612275677732014241 00000000000000.\" DO NOT MODIFY THIS FILE! It was generated by help2man 1.38.2. .TH STIMFIT "1" "February 2011" "stimfit 0.11.1" "User Commands" .SH NAME stimfit \- stimfit .SH SYNOPSIS .B stimfit [\fI-h\fR] [\fI--verbose\fR] [\fI-d \fR] [\fIFile to open\fR] .SH DESCRIPTION .TP \fB\-h\fR, \fB\-\-help\fR show this help message .TP \fB\-\-verbose\fR generate verbose log messages .TP \fB\-d\fR, \fB\-\-dir=\fR Working directory to change to stimfit-0.13.13/dist/debian/stimfit.desktop0000664000175000017500000000033412275677732015542 00000000000000[Desktop Entry] Version=1.0 Type=Application Name=Stimfit GenericName=Stimfit Comment=View and analyze electrophysiology files TryExec=stimfit Exec=stimfit %F Icon=stimfit MimeType=application/x-foo; Categories=Science; stimfit-0.13.13/dist/debian/stimfit.files0000664000175000017500000000024712275677732015176 00000000000000usr/share/applications/stimfit.desktop usr/share/pixmaps/stimfit16x16.xpm usr/share/pixmaps/stimfit32x32.xpm usr/lib/stimfit/*.py usr/lib/stimfit/*.so usr/bin/stimfit stimfit-0.13.13/dist/debian/stimfit.install0000664000175000017500000000007212275677732015536 00000000000000usr/lib/stimfit/*.py usr/lib/stimfit/*.so usr/bin/stimfit stimfit-0.13.13/dist/debian/compat0000664000175000017500000000000212275677732013666 000000000000007 stimfit-0.13.13/dist/debian/python-stfio.files0000664000175000017500000000011512275711653016143 00000000000000usr/lib/python*/*-packages/stfio/_*.so usr/lib/python*/*-packages/stfio/*.py stimfit-0.13.13/dist/debian/rules0000775000175000017500000000460212275677732013552 00000000000000#!/usr/bin/make -f # Sample debian/rules that uses debhelper. # This file is public domain software, originally written by Joey Hess. # # This version is for packages that are architecture independent. # Uncomment this to turn on verbose mode. export DH_VERBOSE=1 DEBPREFIX=$(CURDIR)/debian/tmp/usr PYVER := $(shell pyversions -vd) ifneq (,$(filter parallel=%,$(DEB_BUILD_OPTIONS))) NUMJOBS = $(patsubst parallel=%,%,$(filter parallel=%,$(DEB_BUILD_OPTIONS))) MAKEFLAGS += -j$(NUMJOBS) endif build: build-arch build-indep build-arch: build-stamp build-indep: build-stamp build-stamp: dh_testdir clean: dh_testdir dh_testroot rm -f build-stamp # Add here commands to clean up after the build process. rm -rf ./.libs ./_libs ./.deps ./.stimfit rm -rf $(CURDIR)/man find -name '*.o' | xargs -r rm -f find -name '*.lo' | xargs -r rm -f find -name '*.a' | xargs -r rm -f find -name '*.la' | xargs -r rm -f find -name '*.so' | xargs -r rm -f rm -f $(CURDIR)/test.h5 dh_autoreconf_clean dh_clean install: build dh_autoreconf ./configure --enable-python --enable-debian --with-biosig --prefix=$(DEBPREFIX) $(MAKE) ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS))) $(MAKE) check endif $(MAKE) install ./configure --enable-module --enable-debian --with-biosig --prefix=$(DEBPREFIX) $(MAKE) $(MAKE) install mkdir $(CURDIR)/man && \ cp ./debian/stimfit.1 ./man/stimfit.1 touch build-stamp dh_testroot # dh_prep dh_installdirs # Build architecture-independent files here. binary-indep: build install # We have nothing to do by default. binary-arch: build install dh_testdir dh_testroot dh_installchangelogs dh_installdocs dh_installexamples dh_installmenu -pstimfit # dh_installdebconf # dh_installlogrotate # dh_installemacsen # dh_installcatalogs # dh_installpam dh_installmime -pstimfit # dh_installinit # dh_installcron # dh_installinfo # dh_installwm # dh_installudev # dh_lintian # dh_bugfiles # dh_undocumented dh_python2 dh_installman $(CURDIR)/man/stimfit.1 dh_install --sourcedir=$(CURDIR)/debian/tmp dh_link dh_compress dh_strip --dbg-package=stimfit-dbg dh_fixperms dh_icons # dh_perl [ -x /usr/bin/dh_python2 ] && dh_python2 -V$(PYVER) || : [ -x /usr/bin/dh_numpy ] && dh_numpy || : dh_makeshlibs dh_shlibdeps dh_installdeb dh_gencontrol dh_md5sums dh_builddeb binary: binary-indep binary-arch .PHONY: build clean binary-indep binary-arch binary install stimfit-0.13.13/dist/macosx/0000775000175000017500000000000012275713011012575 500000000000000stimfit-0.13.13/dist/macosx/stimfit.icns0000664000175000017500000030541512275677732015105 00000000000000icns‹ TOC His32zs8mkil32çl8mkit32*Êt8mk@ic08RAic09¿-is32zŽÿ…ÿÿ ,1…01, ÿÿ00€/0/ 00ÿÿ /00$"‚/ 0/ ÿÿ /0/%/,/ 0/ ÿÿ /0.$35,€/H0/ ÿÿ /0- /6*.0/0/ ÿÿ /3'11-"1/0/ ÿÿ 1%&1/2%210 ÿÿ)(1./1'(', ÿÿ .02/ 1 &ÿÿ11/‚0 2341 ÿÿ ,1…/1, ÿÿ ‡  ÿÿ‹ÿŽÿ+…* +ÿÿ GNLMMLMNG ÿÿQPO€PO PQÿÿOOQ/"PO€N OOÿÿOOQ"2S€NXOOÿÿOPM C CRNNOOÿÿOPHP;OONOOÿÿOV<RS&'SNOOÿÿQ?2RPO;TRPÿÿB5QNNS6CBIÿÿIFS€N OR(9ÿÿRRƒO RPPQÿÿ GQ…ORH ÿÿ … ÿÿ‹ÿŽÿBf…b fBÿÿ®Â½¾¾½¾ ®ÿÿ&ÇÄÂÆÉÄۈ ÄÇ&ÿÿ$ÃÃËpMÅÀÀ ÃÃ%ÿÿ$ÃÃÇM:wÍ€ÀXÃÃ%ÿÿ$ÃŽH¦J¥ÉÀÀÃÃ%ÿÿ$ÃÆ¯?ÆFÄÄÀÃÃ%ÿÿ$ÂÖ‘=ÊÏYZÍÀÃÃ%ÿÿ$˘"xÌÄÀ.ÒÊÅ%ÿÿ) 'ÊÀÀσ*¢Ÿµ&ÿÿ&µ®Ï€À ÂÉ]/0‹+ÿÿ&Êʂà ÄÍÆÇÊ&ÿÿ¯Ç„ÃÄɰÿÿ&…$&ÿÿ‹ÿs8mk]||||||||]3ïÿÿÿÿÿÿÿÿÿÿï3Zÿÿÿÿÿÿÿÿÿÿÿÿ[Yÿÿÿÿÿÿÿÿÿÿÿÿ[YÿÿÿÿÿÿÿÿÿÿÿÿZYÿÿÿÿÿÿÿÿÿÿÿÿZYÿÿÿÿÿÿÿÿÿÿÿÿZYÿÿÿÿÿÿÿÿÿÿÿÿZYÿÿÿÿÿÿÿÿÿÿÿÿZYÿÿÿÿÿÿÿÿÿÿÿÿZYÿÿÿÿÿÿÿÿÿÿÿÿZ\ÿÿÿÿÿÿÿÿÿÿÿÿ\IûÿÿÿÿÿÿÿÿÿÿûIgЇ‡‡‡‡‡‡‡Šg  il32çÞÿ€€ÿÿ(5‘4 5(ÿÿ2“/ 2ÿÿ1“/ 1ÿÿ1ƒ/€0Š/ 1ÿÿ1ƒ/-0‰/ 1ÿÿ1/0).‰/ 1ÿÿ1/1&"5)&0ˆ/ 1ÿÿ1/1$#5:++0‡/ 1ÿÿ1/0"$-:;*.‡/ 1ÿÿ1‚/ $/0=4(0†/ 1ÿÿ1/ .$0.5;(*0…/ 1ÿÿ1€/ 0-$1/.90!-0„/ 1ÿÿ1€/ 1(&1//17"0„/ 1ÿÿ1€/ 3+0//.4.#1ƒ/1ÿÿ1/01% 1/.5+0‚/1ÿÿ11/ ,1‚/1/2‚/1ÿÿ2+53.ƒ/4(2€101ÿÿ3!80.„/0,€(')1ÿÿ13/5.‡/3‚ 3ÿÿ1/2.ˆ/.5/%"#$(2ÿÿ1Œ/.16 31ÿÿ1Ž/. /1ÿÿ2“/ 2ÿÿ&2‘12&ÿÿ€‘€ÿÿ›ÿÿ›žÿÞÿ€  €ÿÿ ?T‘R T? ÿÿR“N RÿÿR“N RÿÿRƒNRROŠN RÿÿR‚NP*!JP‰N RÿÿRNQB OOˆN RÿÿRNR4-RˆN RÿÿRNR+B#AR‡N RÿÿRNR#JEOO†N RÿÿRNPKS10R†N RÿÿR€N ONPONAR…N RÿÿR€N PH RNRAMP„N RÿÿR€N R>+RNNR2 #R„N RÿÿR€N W+9QNNOP!3RƒNRÿÿRNPQ= KO€NQJ FQ‚NRÿÿRPO4R‚NS8S‚NRÿÿRH>R„NRAT€QPRÿÿV("RR…NR=BCB@DRÿÿRJ3PO‡NS!‚ UÿÿROR‰NOP3# !"0SÿÿRŒNORT RRÿÿR“N RÿÿRO‘N ORÿÿ >“R= ÿÿ€  €ÿÿ›ÿÿ›žÿÞÿ€>BAB>€ÿÿ™Ñ‘Í Ñ™ÿÿ:Ì‘À ÂÌ;ÿÿ@É‘À ÂÉ@ÿÿ?É‚ÀÊËĉÀ ÂÉ@ÿÿ?ÉÂÀÅdM¶ÆˆÀ ÂÉ@ÿÿ?É€ÀÇ AÃÇÀ ÂÉ@ÿÿ?É€ÀÌ|Ij͇À ÂÉ@ÿÿ?É€ÀÍf¢Q'ŸÉ†À ÂÉ@ÿÿ?É€ÀÌQ"·¨1FÂÃ…À ÂÉ@ÿÿ?É€ÀÉ>,¼Íw%rÍ…ÀÂÉ@ÿÿ?ÉÂÀÀÂÀ,8ÅÄÀI&žÊ„ÀÂÉ@ÿÿ?ÉÂÀÀıJËÀÉ¡'6½ÅƒÀÂÉ@ÿÿ?ÉÂÀÀÉ— dÍÀÀÍwRË‚ÀÂÉ@ÿÿ?ÉÂÀÂ×eŠËÀÀÂÉK yÍ‚ÀÂÉ@ÿÿ?ÉÂÅÇ’»Ä€Àƶ"«ÇÀÂÉ@ÿÿ?ÉÉÃD{Ì‚ÀφEÏÀÂÉ@ÿÿ?̰.0˜ËƒÀÂÌ3žÑ€ÇÆÉ@ÿÿ?Ö^LËÌ…ÀË“,¡¡Ÿ¨Ê@ÿÿ?˶|ÉćÀÍK‚ ,Ó@ÿÿ?ÉÄ̈ÀÃÅ{OJKMqÍ@ÿÿ?É‹ÀÂÍÑ ÍÇ@ÿÿ@É‘À ÂÉ@ÿÿ:ÌÑ ÃÌ;ÿÿ•Ë‘ÉË–ÿÿ€:@?@:€ÿÿ›ÿÿ›žÿl8mk%nzyyyyyyyyyyyyyyyyyyzn&,âÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿâ,ÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿ‚ “ÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿ” —ÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿ˜—ÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿ˜—ÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿ˜—ÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿ˜—ÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿ˜—ÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿ˜—ÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿ˜—ÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿ˜—ÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿ˜—ÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿ˜—ÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿ˜—ÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿ˜—ÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿ˜—ÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿ˜—ÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿ˜—ÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿ˜—ÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿ˜—ÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿ˜˜ÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿ™’ÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿ“[ïÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿï[ ,s³¾¾¾¾¾¾¾¾¾¾¾¾¾¾¾¾¾¾¾¾³s, +@KLLLLLLLLLLLLLLLLLLK@+  it32*Êÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿÿòÿó‡ÿó‡ÿó‡ÿó‡ÿó‡ÿ‹Í‹‡ÿ‰%)-13Í431.)%‰‡ÿˆ)-6<<Ï:<<6-*ˆ‡ÿ‡*.860.Ï-.068.)‡‡ÿ‡*+51--.Ï/.--15,*‡‡ÿ†$)01.Õ/.10*%†‡ÿ†*+0..Õ/..0+*†‡ÿ†+,..×/..,+†‡ÿ†+,.Ù/-,,†‡ÿ†,-.Ù/.-,†‡ÿ†--.Ù/.-,†‡ÿ†--.Ù/.-,†‡ÿ†--.Ù/.-,†‡ÿ†--.Ù/.-,†‡ÿ†--.Ù/.-,†‡ÿ†--.Ù/.-,†‡ÿ†--.Ù/.-,†‡ÿ†--.Ù/.-,†‡ÿ†--.™/-++,.¸/.-,†‡ÿ†--.˜/+!%,·/.-,†‡ÿ†--.–/0,€*¶/.-,†‡ÿ†--.–/ 0)µ/.-,†‡ÿ†--.•/0*€+´/.-,†‡ÿ†--.•/1 €!-³/.-,†‡ÿ†--.•/0#$%%$!!.²/.-,†‡ÿ†--.”/0-"&'))(&"&0±/.-,†‡ÿ†--.”/0*!$'*++,+'#*0°/.-,†‡ÿ†--.”/1&"&',9.-.,(# -°/.-,†‡ÿ†--.”/1!$&'+U<,/0-)#%°/.-,†‡ÿ†--.”/0 $&',AV4.11/)!*0®/.-,†‡ÿ†--.”/0!$'%.1AP.142.' 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CFBundleVersion 0.13.13 CFBundleShortVersionString 0.13.13 CFBundleGetInfoString stimfit version 0.13.13, (c) 2003-2011 C. Schmidt-Hieber CFBundleLongVersionString 0.13.13, (c) 2003-2011 C. Schmidt-Hieber NSHumanReadableCopyright Copyright 2003-2011 C. Schmidt-Hieber LSRequiresCarbon LSRequiresCocoa CSResourcesFileMapped stimfit-0.13.13/dist/macosx/scripts/0000775000175000017500000000000012275713011014264 500000000000000stimfit-0.13.13/dist/macosx/scripts/conf_mac_release.sh0000775000175000017500000000171112275677732020033 00000000000000#! /bin/bash # arch_flags="-arch i386 -isysroot /Developer/SDKs/MacOSX10.5.sdk -mmacosx-version-min=10.5" arch_flags="" # -arch i386 -arch x86_64" # ../../configure --enable-python --with-wx-config=/Users/cs/wxbin/bin/wx-config CXX="/usr/bin/g++-4.0" CC="/usr/bin/gcc-4.0" LD="/usr/bin/g++-4.0" CPPFLAGS="-DH5_USE_16_API" CFLAGS="$arch_flags" CXXFLAGS="$arch_flags -I/Users/cs/wxPython-2.9/include -I/opt/local/include" LDFLAGS="$arch_flags -headerpad_max_install_names -L/Users/cs/wxbin/lib -L/opt/local/lib -L/usr/lib" PYTHON=/usr/bin/python2.5 ../../configure --with-wx-config=/Users/cs/wxbin/bin/wx-config --disable-dependency-tracking --prefix=/Users/cs/stimfit/build/release/stimfit.app/Contents CPPFLAGS="-DH5_USE_16_API" CFLAGS="" CXXFLAGS="-I/Users/cs/wxbin/include/wx-2.9 -I/opt/local/include" LDFLAGS="-headerpad_max_install_names -L/Users/cs/wxbin/lib -L/opt/local/lib -L/usr/lib" PYTHON=/usr/bin/python CC=/usr/bin/llvm-gcc-4.2 CXX=/usr/bin/llvm-g++-4.2 stimfit-0.13.13/dist/macosx/scripts/change_deps_release.sh0000775000175000017500000000651012275677732020530 00000000000000#! /bin/bash WX_CONFIG=/Users/cs/wxbin/bin/wx-config # WXPY_DIR=/Users/cs/wxPython-src-2.9.1.1/wxPython # WXPY_VER=wx-2.9.1-osx_cocoa # WXPY_INSTALL_DIR=/Users/cs/wxPython-2.9/dummy-install/lib/python2.5/site-packages mkdir -p stimfit.app mkdir -p stimfit.app/Contents mkdir -p stimfit.app/Contents/Frameworks mkdir -p stimfit.app/Contents/MacOS mkdir -p stimfit.app/Contents/libs cp -v -r /Users/cs/matplotlib-1.0.1/build/lib.macosx-10.7-intel-2.6/* ./stimfit.app/Contents/Frameworks cp -v -r /Users/cs/wxbin/lib/python2.6/site-packages/wx* ./stimfit.app/Contents/Frameworks chown -R cs:staff stimfit.app make stimfit.app cp -v .libs/stimfit ./stimfit.app/Contents/MacOS/stimfit chmod +x ./stimfit.app/Contents/MacOS/stimfit mkdir -p ./stimfit.app/Contents/Frameworks/stimfit # if test -n "$1"; then # if [ $1 = '1' ]; then # rm -rf ./stimfit.app/Contents/Frameworks/numpy* # cp -R /System/Library/Frameworks/Python.framework//Versions/2.6/Extras/lib/python/numpy* ./stimfit.app/Contents/Frameworks/ # rm -rf ./stimfit.app/Contents/Frameworks/wx* # cp -R ${WXPY_INSTALL_DIR}/wx* ./stimfit.app/Contents/Frameworks/ # mkdir -p ./stimfit.app/Contents/Frameworks/${WXPY_VER} # mkdir -p ./stimfit.app/Contents/Frameworks/${WXPY_VER}/wx # rsync -l ${WXPY_INSTALL_DIR}/${WXPY_VER}/wx/*.so ./stimfit.app/Contents/Frameworks/${WXPY_VER}/wx # find ./stimfit.app -name "*.so" -exec dylibbundler -of -b -x '{}' -d ./stimfit.app/Contents/libs/ \; # find ./stimfit.app -name "*.pyc" -exec rm '{}' \; # fi # fi ## # rsync -rtuvl `${WX_CONFIG} --exec-prefix`/lib/libwx*.dylib ./stimfit.app/Contents/libs/ mkdir -p ./stimfit.app/Contents/lib/stimfit cp -v ./src/stimfit/py/.libs/libpystf.dylib ./stimfit.app/Contents/lib/stimfit/libpystf.dylib cp -v ./src/stimfit/.libs/libstimfit.dylib ./stimfit.app/Contents/lib/stimfit/libstimfit.dylib cp -v ./src/libstfio/.libs/libstfio.dylib ./stimfit.app/Contents/lib/stimfit/libstfio.dylib rm -fv ./stimfit.app/Contents/Frameworks/stimfit/_stf.so rm -fv ./stimfit.app/Contents/libs/libpystf.dylib rm -fv ./stimfit.app/Contents/libs/libstimfit.dylib # cp -v ./src/app/.libs/libstimfit.dylib ./stimfit.app/Contents/libs/libstimfit.dylib dylibbundler -of -b -x ./stimfit.app/Contents/MacOS/stimfit -d ./stimfit.app/Contents/libs/ CURDIR=`pwd` cd stimfit.app/Contents/Frameworks/stimfit ln -sf ../../libs/libpystf.dylib _stf.so cd ${CURDIR} if test -n "$1"; then if [ $1 = '1' ]; then find ./stimfit.app -name "*.dylib" -exec dylibbundler -of -b -x '{}' -d ./stimfit.app/Contents/libs/ \; find ./stimfit.app -name "*.so" -exec dylibbundler -of -b -x '{}' -d ./stimfit.app/Contents/libs/ \; fi fi rm -rfv ./stimfit.app/Contents/lib cp -v ../../src/stimfit/py/*.py ./stimfit.app/Contents/Frameworks/stimfit/ cp -v ../../src/pystfio/*.py ./stimfit.app/Contents/Frameworks/stimfit/ # # rm ./stimfit.app/Contents/libs/libwx* # # rsync -rtuvl `${WX_CONFIG} --exec-prefix`/lib/libwx_baseu_net-* ./stimfit.app/Contents/libs/ # # rsync -rtuvl `${WX_CONFIG} --exec-prefix`/lib/libwx_baseu-* ./stimfit.app/Contents/libs/ # # rsync -rtuvl `${WX_CONFIG} --exec-prefix`/lib/libwx_osx_cocoau_adv* ./stimfit.app/Contents/libs/ # # rsync -rtuvl `${WX_CONFIG} --exec-prefix`/lib/libwx_osx_cocoau_aui* ./stimfit.app/Contents/libs/ # # rsync -rtuvl `${WX_CONFIG} --exec-prefix`/lib/libwx_osx_cocoau_core* ./stimfit.app/Contents/libs/ stimfit-0.13.13/dist/macosx/app.r0000664000175000017500000054003212275677732013507 00000000000000data 'icns' (-16455) { $"6963 6E73 0000 FFFB 6838 6D6B 0000 0908" $"0000 0054 AFAD A69F 9891 8B84 7D76 6F69" $"625B 544D 4740 3932 2B17 0000 0001 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2A29 2827" $"2523 211F 1D1B 1917 1513 1311 0A05 0503" $"030B 2086 2102 2224 2780 2A0C 3529 0000" $"0C25 0204 1415 1412 1181 1084 0F19 1012" $"1311 0B05 0209 1D1E 1E1D 1D1C 1C1B 1D1E" $"1E1C 1A1B 2428 3C29 8000 0323 1401 0D83" $"0F2F 0E0D 0C0B 0A09 0809 0D0E 0C09 0705" $"0201 0515 1614 110F 0D0B 0806 0403 1E31" $"5067 5D2E 0700 0002 3E1C 0407 0808 0706" $"0505 8304 8003 0506 0F0B 202A 0684 0316" $"040A 1522 3241 5160 82A4 B1B6 6400 0005" $"3403 0202 0403 0384 0281 0324 0000 0515" $"274C 623E 3747 5868 7989 98A3 A8A7 ABB1" $"B8BE C5CB D1DA BD00 0003 2B02 0504 0304" $"0482 0520 0607 090C 0F11 0F12 1416 1E27" $"355F 92AE BEC5 CDD5 DDE4 E7E0 DDD9 D4CF" $"CAC5 C1BF AD80 0014 3301 0608 0A0C 1013" $"1619 1C1F 2225 282A 2D2F 2729 2680 2414" $"2B30 42AB EEE8 E3DD D6D1 CDC2 C1C1 C0BF" $"BFBE BDBB 9C80 0014 3000 0E23 2729 2C2F" $"3235 4254 534D 4845 423F 2C2A 2580 1F03" $"292F 3491 80CD 80CC 0ACA C0C0 BFBF BEBD" $"BCBC BA92 8000 042F 0007 3769 806B 056A" $"6659 443E 3E80 3D0C 3C29 2924 1F1E 1E28" $"2E33 91CB CC80 CB0B CAC8 BFBE BEBD BDBC" $"BBBA B788 8000 0329 0603 3382 3E01 3D3E" $"823D 043C 3B2A 2824 801E 0327 2D32 9281" $"CA0C C9C9 C6BE BDBC BCBB BAB9 B9B7 7680" $"0003 2908 0230 853D 823C 033B 2A28 2380" $"1E05 262C 3192 C8C9 80C8 0BC7 C4BC BCBB" $"BABA B9B8 B7B5 6C80 0003 250B 012C 823D" $"003C 803D 803C 043B 3B29 2823 801E 0325" $"2B30 9281 C70C C6C6 C2BB BABA B9B8 B7B6" $"B5B3 6480 0004 2010 0128 3C81 3D84 3C0B" $"3B3B 2928 231E 1D1D 242A 2F92 80C5 80C4" $"0AC0 B9B9 B8B7 B7B6 B5B4 B355 8000 0321" $"1100 2487 3C80 3B03 3A29 2823 801D 0323" $"292E 9381 C30C C2C2 BEB8 B7B6 B6B5 B4B3" $"B2B1 4980 0004 200F 0021 3B81 3C84 3B04" $"3A3A 2A27 2280 1D05 2228 2D93 C2C2 81C1" $"0ABC B6B5 B5B4 B3B2 B1B0 AE43 8000 031E" $"1200 1D87 3B80 3A03 3929 2723 801D 1421" $"262C 93C0 C1C0 C0BE BBB8 B5B4 B3B2 B2B1" $"B0AF AE35 8000 0418 1800 1939 813B 013A" $"3B82 3A0F 3939 2927 231D 1C1C 2025 2A90" $"B9B6 B4B2 80B1 09B3 B4B2 B1B0 AFAE ADAC" $"2980 0004 151C 0016 3988 3A04 3938 2A26" $"2380 1C03 1A1E 2386 81B0 0CAF AFAE AEAF" $"B2B0 AEAD ACAB A823 8000 040E 2100 1338" $"833A 1039 3633 302E 2B2A 2B27 2621 1C1C" $"181C 2286 82AE 0BAD ADAC ACAB AEAE ACAA" $"AAA7 1780 000A 0526 0010 3739 3633 302E" $"2B82 2A00 2980 2A07 2625 201B 161B 2086" $"80AD 0DAC ACAB ABAA AAA9 A8A9 ABA9 A8A6" $"0981 0003 2E00 0928 812A 0029 802A 8429" $"072A 2524 1F15 1A1F 8681 AB0C AAAA A9A9" $"A8A7 A6A5 A5A7 A9A3 0481 0003 280B 0625" $"8829 0028 8229 0625 232B 181E 86AA 80A9" $"0BA8 A8A7 A7A6 A5A4 9E90 8988 9582 0003" $"2113 0424 8129 0028 8329 8228 0829 2722" $"3522 1D85 A8A8 80A7 0AA6 A395 8E85 7A79" $"6A4B 3313 8200 030E 2303 2389 2881 2712" $"2829 253E 4023 85A6 A59A 9088 7F7A 7556" $"3D24 0587 0002 2F08 2181 2800 2783 2802" $"2728 2880 270C 2432 420B 506F 7F78 765C" $"422D 0E8C 0002 2810 1F81 2800 2782 280F" $"2727 2529 2D31 3C49 3F2A 0012 2125 1801" $"9000 0417 1C1D 2728 8227 0A26 262E 313A" $"4B43 352A 1401 9800 0F02 361A 2727 2624" $"2D2E 3446 4537 2E1C 059E 0009 2D2A 2E31" $"434B 3A2F 2307 9E00 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$"2326 2829 2B2D 599F BFCC 85CB 83CA 05C9" $"CBCC C2BE BE82 BD82 BC81 BB80 BA81 B903" $"B3BB B222 8400 0245 1C21 8000 0501 0724" $"3139 3B80 3C04 3B3C 3C3B 3C84 3B01 3A3B" $"823A 8039 0238 3939 8038 0137 3880 3708" $"3427 2122 2221 1F16 1580 1680 170B 1617" $"1523 2628 292B 2D59 9FBE 81CB 02CA CBCB" $"83CA 06C9 CAC9 CBCB C1BE 83BD 80BC 01BB" $"BC80 BB81 BA81 B903 AFC1 B224 8400 0234" $"1E33 8000 0401 0623 3038 873B 023A 3B3B" $"843A 8339 8338 8237 0834 2721 2222 211F" $"1615 8216 0D17 1617 1523 2627 292A 2C5A" $"9FBE CA80 CB83 CA01 C9CA 81C9 02CB CBC1" $"81BD 83BC 80BB 81BA 80B9 80B8 03AE B4B2" $"2784 0002 4223 1380 0005 0105 212F 373A" $"803B 043A 3B3B 3A3B 843A 0239 3A3A 8139" $"0138 3981 3801 3738 8337 0B34 2721 2222" $"211F 1615 1616 1581 160A 1715 2225 2729" $"2A2C 5A9F BE81 CA83 C980 C808 C7C6 C6C7" $"C6BE BDBC BD81 BC82 BB81 BA80 B907 B8B8" $"B7B8 B1B4 AD19 8400 0245 281E 8100 0303" $"202F 3787 3A86 3984 3883 3781 3602 3734" $"2881 2100 1F84 1580 1619 1522 2526 2829" $"2B5A 9EBB 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$"0D80 0E05 111C 2020 1F1F 801E 041D 1E1E" $"1D1E 821D 0F1F 1B13 1213 1312 1313 1213" $"1312 1313 1280 1302 1213 1380 1203 113B" $"2A30 8600 093C 2415 0000 0104 5CA7 C981" $"D583 D684 D786 D886 D902 DAD9 CD83 C500" $"BC84 BB03 BC5C 0C0C 800D 050E 0E11 1C20" $"2081 1E84 1D80 1C03 1D1F 1A13 9212 0411" $"1032 2C39 8600 0A4B 2817 0000 0103 53A4" $"C7D4 80D5 83D6 02D7 D7D6 81D7 02D8 D8D7" $"83D8 02D9 D9D8 84D9 07D8 CDC4 C5C5 C4C5" $"C580 BB00 BA82 BB01 5C0C 800D 800E 0211" $"1C20 801F 801E 021D 1E1E 801D 001C 801D" $"0F1F 1A13 1213 1312 1313 1213 1312 1313" $"1280 1302 1213 1380 1203 1023 2F43 8600" $"0A5B 1A0F 0000 0102 4BA1 C5D4 83D5 02D6" $"D6D5 80D6 02D7 D7D6 82D7 04D8 D7D8 D8D7" $"83D8 81D9 01D8 CD83 C400 BB82 BA04 BBBA" $"BB5C 0C80 0D80 0E0B 111C 201F 1F1E 1D1E" $"1E1D 1E1E 801D 001C 801D 0F1F 1913 1213" $"1312 1313 1213 1312 1313 1280 1301 1213" $"8112 030F 3234 2186 000A 4619 1F00 0001" $"0242 9DC3 D380 D483 D583 D680 D700 D683" $"D702 D8D8 D784 D80B D7CD C3C4 C4C3 C4C4" $"BBBA BAB9 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$"615F 5D5A 5856 5351 4F4C 4A48 4644 4240" $"3728 2625 2322 1A14 1312 1110 100F 0E0D" $"0B05 1112 1213 1314 1B31 5788 4D4B 4948" $"4645 4342 4140 3F3F 3E3D 3D3C 3E3D 3330" $"3081 2F84 2E86 2D04 2C2D 4F3B 5C81 000F" $"4B20 1E00 0001 0103 1924 396B 6D6E 6F6F" $"8170 306F 6F6E 6E6D 6C6A 6968 6664 6361" $"5F5D 5B59 5754 5250 4E4C 4A48 4644 4240" $"3E35 2725 2322 2019 1312 1211 100F 0E0E" $"0D0A 0511 8113 1714 1B31 5681 4C4A 4847" $"4544 4342 4140 3F3E 3D3D 3C3C 3E3D 3380" $"3080 2F04 2E2F 2F2E 2F82 2E02 2D2E 2E80" $"2D04 2C2D 373B 6581 000D 2B20 3100 0001" $"0102 1724 3565 6869 806A 016B 6B80 6A2E" $"6968 6867 6564 6361 605E 5D5B 5957 5553" $"514F 4D4B 4947 4543 4240 3E3D 3426 2322" $"211F 1912 1211 100F 0E0E 0D0D 0A05 1181" $"1317 141B 3154 7A4A 4947 4644 4342 4140" $"3F3E 3E3D 3D3C 3C3E 3C32 8030 802F 062E" $"2F2F 2E2F 2E2D 802E 022D 2E2E 802D 042C" $"2D39 3B6A 8100 0236 261E 8000 0701 0216" $"2432 5F63 6485 6544 6463 6362 6160 5E5D" $"5C5A 5957 5553 5250 4E4C 4A48 4745 4341" $"403E 3D3B 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$"4381 4225 4141 4040 3F3F 3E3D 3D3C 3B3B" $"3A39 3837 3636 3534 3333 3231 3130 2A1C" $"1918 1817 130C 0B0B 0A0A 8009 1208 0805" $"1012 1312 1313 1D32 474C 403F 3F3E 3D3D" $"803C 803B 813A 053C 382F 2E2F 2F80 2E05" $"2D2E 2E2D 2E2E 812D 0A2C 2D2D 2C2D 2C2C" $"2B47 5919 8200 0A53 1E0E 0000 0101 051C" $"2633 8840 803F 143E 3E3D 3D3C 3C3B 3A3A" $"3938 3737 3635 3434 3332 3231 8030 0A2A" $"1B18 1817 1713 0B0B 0A0A 8109 0F08 0705" $"1012 1312 1313 1D32 464A 3F3F 3E80 3D80" $"3C80 3B81 3A04 3C38 2F2E 2F81 2E05 2D2E" $"2E2D 2E2E 812D 0A2C 2D2D 2C2D 2C2C 3237" $"5F1C 8200 0A48 1E20 0000 0101 041B 2531" $"883E 803D 213C 3C3B 3B3A 3A39 3938 3737" $"3635 3534 3333 3231 3130 302F 2F29 1B18" $"1717 1612 0B0A 0A81 0912 0808 0705 1012" $"1312 1313 1D32 4548 3F3E 3E3D 3D80 3C81" $"3B81 3A0F 3C37 2F2E 2F2E 2D2E 2E2D 2E2E" $"2D2E 2D2C 802D 022C 2D2D 812C 033E 3852" $"0282 0002 2F1F 3280 0004 0103 1A25 2F81" $"3C01 3D3D 833C 803B 213A 3A39 3938 3837" $"3736 3535 3434 3332 3231 3030 2F2F 2E2E" $"291A 1717 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$"2D05 2C2D 2D2C 2D2D 802C 002B 802C 022B" $"2C2C 802B 0328 4546 2684 0002 581D 1080" $"0004 0107 1D26 2C81 2F88 2E82 2D81 2C82" $"2B81 2A80 2903 2A27 1914 8013 0011 8606" $"0305 0510 1181 1205 1E32 3C3B 3A3A 8239" $"8438 0537 393A 312D 2D87 2C86 2B05 2A2A" $"2753 4F1C 8400 0245 1C21 8000 0401 061C" $"252C 872E 012D 2E84 2D81 2C83 2B80 2A01" $"292A 8029 0626 1913 1414 1311 8106 0005" $"8006 0C05 0605 1011 1212 1313 1F32 3B3B" $"803A 0739 3A39 3839 3938 3981 380B 3939" $"302D 2C2D 2D2C 2D2D 2C2D 812C 002B 802C" $"802B 062A 2B2B 265D 5320 8400 0234 1E33" $"8000 0501 051B 252B 2D80 2E02 2D2E 2E83" $"2D02 2C2D 2D81 2C01 2B2C 812B 012A 2B81" $"2A82 290B 2619 1314 1413 1106 0506 0605" $"8006 0B05 0605 1011 1212 1313 1F32 3B81" $"3A80 3902 3839 3980 380C 3738 3839 3930" $"2D2C 2D2D 2C2D 2D80 2C03 2B2C 2C2B 802C" $"802B 062A 2B2B 2C36 5825 8400 0242 2313" $"8000 0401 041A 242B 872D 022C 2D2D 842C" $"802B 022A 2B2B 802A 0229 2A2A 8229 0B26" $"1913 1413 1311 0605 0606 0580 060B 0506" $"0510 1112 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0000 0000" $"0000 0000 0000 0000 0000 00" }; stimfit-0.13.13/doc/0000775000175000017500000000000012275713011011105 500000000000000stimfit-0.13.13/doc/Doxyfile0000664000175000017500000020153112275677732012560 00000000000000# Doxyfile 1.5.8 # This file describes the settings to be used by the documentation system # doxygen (www.doxygen.org) for a project # # All text after a hash (#) is considered a comment and will be ignored # The format is: # TAG = value [value, ...] # For lists items can also be appended using: # TAG += value [value, ...] # Values that contain spaces should be placed between quotes (" ") #--------------------------------------------------------------------------- # Project related configuration options #--------------------------------------------------------------------------- # This tag specifies the encoding used for all characters in the config file # that follow. The default is UTF-8 which is also the encoding used for all # text before the first occurrence of this tag. Doxygen uses libiconv (or the # iconv built into libc) for the transcoding. See # http://www.gnu.org/software/libiconv for the list of possible encodings. DOXYFILE_ENCODING = UTF-8 # The PROJECT_NAME tag is a single word (or a sequence of words surrounded # by quotes) that should identify the project. PROJECT_NAME = Stimfit # The PROJECT_NUMBER tag can be used to enter a project or revision number. # This could be handy for archiving the generated documentation or # if some version control system is used. PROJECT_NUMBER = 0.13.13 # The OUTPUT_DIRECTORY tag is used to specify the (relative or absolute) # base path where the generated documentation will be put. # If a relative path is entered, it will be relative to the location # where doxygen was started. If left blank the current directory will be used. OUTPUT_DIRECTORY = doc/doxygen # If the CREATE_SUBDIRS tag is set to YES, then doxygen will create # 4096 sub-directories (in 2 levels) under the output directory of each output # format and will distribute the generated files over these directories. # Enabling this option can be useful when feeding doxygen a huge amount of # source files, where putting all generated files in the same directory would # otherwise cause performance problems for the file system. CREATE_SUBDIRS = NO # The OUTPUT_LANGUAGE tag is used to specify the language in which all # documentation generated by doxygen is written. Doxygen will use this # information to generate all constant output in the proper language. # The default language is English, other supported languages are: # Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional, # Croatian, Czech, Danish, Dutch, Farsi, Finnish, French, German, Greek, # Hungarian, Italian, Japanese, Japanese-en (Japanese with English messages), # Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian, Polish, # Portuguese, Romanian, Russian, Serbian, Serbian-Cyrilic, Slovak, Slovene, # Spanish, Swedish, and Ukrainian. OUTPUT_LANGUAGE = English # If the BRIEF_MEMBER_DESC tag is set to YES (the default) Doxygen will # include brief member descriptions after the members that are listed in # the file and class documentation (similar to JavaDoc). # Set to NO to disable this. BRIEF_MEMBER_DESC = YES # If the REPEAT_BRIEF tag is set to YES (the default) Doxygen will prepend # the brief description of a member or function before the detailed description. # Note: if both HIDE_UNDOC_MEMBERS and BRIEF_MEMBER_DESC are set to NO, the # brief descriptions will be completely suppressed. REPEAT_BRIEF = YES # This tag implements a quasi-intelligent brief description abbreviator # that is used to form the text in various listings. Each string # in this list, if found as the leading text of the brief description, will be # stripped from the text and the result after processing the whole list, is # used as the annotated text. Otherwise, the brief description is used as-is. # If left blank, the following values are used ("$name" is automatically # replaced with the name of the entity): "The $name class" "The $name widget" # "The $name file" "is" "provides" "specifies" "contains" # "represents" "a" "an" "the" ABBREVIATE_BRIEF = # If the ALWAYS_DETAILED_SEC and REPEAT_BRIEF tags are both set to YES then # Doxygen will generate a detailed section even if there is only a brief # description. ALWAYS_DETAILED_SEC = NO # If the INLINE_INHERITED_MEMB tag is set to YES, doxygen will show all # inherited members of a class in the documentation of that class as if those # members were ordinary class members. Constructors, destructors and assignment # operators of the base classes will not be shown. INLINE_INHERITED_MEMB = NO # If the FULL_PATH_NAMES tag is set to YES then Doxygen will prepend the full # path before files name in the file list and in the header files. If set # to NO the shortest path that makes the file name unique will be used. FULL_PATH_NAMES = YES # If the FULL_PATH_NAMES tag is set to YES then the STRIP_FROM_PATH tag # can be used to strip a user-defined part of the path. Stripping is # only done if one of the specified strings matches the left-hand part of # the path. The tag can be used to show relative paths in the file list. # If left blank the directory from which doxygen is run is used as the # path to strip. STRIP_FROM_PATH = # The STRIP_FROM_INC_PATH tag can be used to strip a user-defined part of # the path mentioned in the documentation of a class, which tells # the reader which header file to include in order to use a class. # If left blank only the name of the header file containing the class # definition is used. Otherwise one should specify the include paths that # are normally passed to the compiler using the -I flag. STRIP_FROM_INC_PATH = # If the SHORT_NAMES tag is set to YES, doxygen will generate much shorter # (but less readable) file names. This can be useful is your file systems # doesn't support long names like on DOS, Mac, or CD-ROM. SHORT_NAMES = NO # If the JAVADOC_AUTOBRIEF tag is set to YES then Doxygen # will interpret the first line (until the first dot) of a JavaDoc-style # comment as the brief description. If set to NO, the JavaDoc # comments will behave just like regular Qt-style comments # (thus requiring an explicit @brief command for a brief description.) JAVADOC_AUTOBRIEF = NO # If the QT_AUTOBRIEF tag is set to YES then Doxygen will # interpret the first line (until the first dot) of a Qt-style # comment as the brief description. If set to NO, the comments # will behave just like regular Qt-style comments (thus requiring # an explicit \brief command for a brief description.) QT_AUTOBRIEF = NO # The MULTILINE_CPP_IS_BRIEF tag can be set to YES to make Doxygen # treat a multi-line C++ special comment block (i.e. a block of //! or /// # comments) as a brief description. This used to be the default behaviour. # The new default is to treat a multi-line C++ comment block as a detailed # description. Set this tag to YES if you prefer the old behaviour instead. MULTILINE_CPP_IS_BRIEF = NO # If the INHERIT_DOCS tag is set to YES (the default) then an undocumented # member inherits the documentation from any documented member that it # re-implements. INHERIT_DOCS = YES # If the SEPARATE_MEMBER_PAGES tag is set to YES, then doxygen will produce # a new page for each member. If set to NO, the documentation of a member will # be part of the file/class/namespace that contains it. SEPARATE_MEMBER_PAGES = NO # The TAB_SIZE tag can be used to set the number of spaces in a tab. # Doxygen uses this value to replace tabs by spaces in code fragments. TAB_SIZE = 8 # This tag can be used to specify a number of aliases that acts # as commands in the documentation. An alias has the form "name=value". # For example adding "sideeffect=\par Side Effects:\n" will allow you to # put the command \sideeffect (or @sideeffect) in the documentation, which # will result in a user-defined paragraph with heading "Side Effects:". # You can put \n's in the value part of an alias to insert newlines. ALIASES = # Set the OPTIMIZE_OUTPUT_FOR_C tag to YES if your project consists of C # sources only. Doxygen will then generate output that is more tailored for C. # For instance, some of the names that are used will be different. The list # of all members will be omitted, etc. OPTIMIZE_OUTPUT_FOR_C = NO # Set the OPTIMIZE_OUTPUT_JAVA tag to YES if your project consists of Java # sources only. Doxygen will then generate output that is more tailored for # Java. For instance, namespaces will be presented as packages, qualified # scopes will look different, etc. OPTIMIZE_OUTPUT_JAVA = NO # Set the OPTIMIZE_FOR_FORTRAN tag to YES if your project consists of Fortran # sources only. Doxygen will then generate output that is more tailored for # Fortran. OPTIMIZE_FOR_FORTRAN = NO # Set the OPTIMIZE_OUTPUT_VHDL tag to YES if your project consists of VHDL # sources. Doxygen will then generate output that is tailored for # VHDL. OPTIMIZE_OUTPUT_VHDL = NO # Doxygen selects the parser to use depending on the extension of the files it parses. # With this tag you can assign which parser to use for a given extension. # Doxygen has a built-in mapping, but you can override or extend it using this tag. # The format is ext=language, where ext is a file extension, and language is one of # the parsers supported by doxygen: IDL, Java, Javascript, C#, C, C++, D, PHP, # Objective-C, Python, Fortran, VHDL, C, C++. For instance to make doxygen treat # .inc files as Fortran files (default is PHP), and .f files as C (default is Fortran), # use: inc=Fortran f=C EXTENSION_MAPPING = # If you use STL classes (i.e. std::string, std::vector, etc.) but do not want # to include (a tag file for) the STL sources as input, then you should # set this tag to YES in order to let doxygen match functions declarations and # definitions whose arguments contain STL classes (e.g. func(std::string); v.s. # func(std::string) {}). This also make the inheritance and collaboration # diagrams that involve STL classes more complete and accurate. BUILTIN_STL_SUPPORT = YES # If you use Microsoft's C++/CLI language, you should set this option to YES to # enable parsing support. CPP_CLI_SUPPORT = NO # Set the SIP_SUPPORT tag to YES if your project consists of sip sources only. # Doxygen will parse them like normal C++ but will assume all classes use public # instead of private inheritance when no explicit protection keyword is present. SIP_SUPPORT = NO # For Microsoft's IDL there are propget and propput attributes to indicate getter # and setter methods for a property. Setting this option to YES (the default) # will make doxygen to replace the get and set methods by a property in the # documentation. This will only work if the methods are indeed getting or # setting a simple type. If this is not the case, or you want to show the # methods anyway, you should set this option to NO. IDL_PROPERTY_SUPPORT = YES # If member grouping is used in the documentation and the DISTRIBUTE_GROUP_DOC # tag is set to YES, then doxygen will reuse the documentation of the first # member in the group (if any) for the other members of the group. By default # all members of a group must be documented explicitly. DISTRIBUTE_GROUP_DOC = NO # Set the SUBGROUPING tag to YES (the default) to allow class member groups of # the same type (for instance a group of public functions) to be put as a # subgroup of that type (e.g. under the Public Functions section). Set it to # NO to prevent subgrouping. Alternatively, this can be done per class using # the \nosubgrouping command. SUBGROUPING = YES # When TYPEDEF_HIDES_STRUCT is enabled, a typedef of a struct, union, or enum # is documented as struct, union, or enum with the name of the typedef. So # typedef struct TypeS {} TypeT, will appear in the documentation as a struct # with name TypeT. When disabled the typedef will appear as a member of a file, # namespace, or class. And the struct will be named TypeS. This can typically # be useful for C code in case the coding convention dictates that all compound # types are typedef'ed and only the typedef is referenced, never the tag name. TYPEDEF_HIDES_STRUCT = NO # The SYMBOL_CACHE_SIZE determines the size of the internal cache use to # determine which symbols to keep in memory and which to flush to disk. # When the cache is full, less often used symbols will be written to disk. # For small to medium size projects (<1000 input files) the default value is # probably good enough. For larger projects a too small cache size can cause # doxygen to be busy swapping symbols to and from disk most of the time # causing a significant performance penality. # If the system has enough physical memory increasing the cache will improve the # performance by keeping more symbols in memory. Note that the value works on # a logarithmic scale so increasing the size by one will rougly double the # memory usage. The cache size is given by this formula: # 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0, # corresponding to a cache size of 2^16 = 65536 symbols SYMBOL_CACHE_SIZE = 0 #--------------------------------------------------------------------------- # Build related configuration options #--------------------------------------------------------------------------- # If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in # documentation are documented, even if no documentation was available. # Private class members and static file members will be hidden unless # the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES EXTRACT_ALL = NO # If the EXTRACT_PRIVATE tag is set to YES all private members of a class # will be included in the documentation. EXTRACT_PRIVATE = NO # If the EXTRACT_STATIC tag is set to YES all static members of a file # will be included in the documentation. EXTRACT_STATIC = NO # If the EXTRACT_LOCAL_CLASSES tag is set to YES classes (and structs) # defined locally in source files will be included in the documentation. # If set to NO only classes defined in header files are included. EXTRACT_LOCAL_CLASSES = YES # This flag is only useful for Objective-C code. When set to YES local # methods, which are defined in the implementation section but not in # the interface are included in the documentation. # If set to NO (the default) only methods in the interface are included. EXTRACT_LOCAL_METHODS = NO # If this flag is set to YES, the members of anonymous namespaces will be # extracted and appear in the documentation as a namespace called # 'anonymous_namespace{file}', where file will be replaced with the base # name of the file that contains the anonymous namespace. By default # anonymous namespace are hidden. EXTRACT_ANON_NSPACES = NO # If the HIDE_UNDOC_MEMBERS tag is set to YES, Doxygen will hide all # undocumented members of documented classes, files or namespaces. # If set to NO (the default) these members will be included in the # various overviews, but no documentation section is generated. # This option has no effect if EXTRACT_ALL is enabled. HIDE_UNDOC_MEMBERS = NO # If the HIDE_UNDOC_CLASSES tag is set to YES, Doxygen will hide all # undocumented classes that are normally visible in the class hierarchy. # If set to NO (the default) these classes will be included in the various # overviews. This option has no effect if EXTRACT_ALL is enabled. HIDE_UNDOC_CLASSES = NO # If the HIDE_FRIEND_COMPOUNDS tag is set to YES, Doxygen will hide all # friend (class|struct|union) declarations. # If set to NO (the default) these declarations will be included in the # documentation. HIDE_FRIEND_COMPOUNDS = NO # If the HIDE_IN_BODY_DOCS tag is set to YES, Doxygen will hide any # documentation blocks found inside the body of a function. # If set to NO (the default) these blocks will be appended to the # function's detailed documentation block. HIDE_IN_BODY_DOCS = NO # The INTERNAL_DOCS tag determines if documentation # that is typed after a \internal command is included. If the tag is set # to NO (the default) then the documentation will be excluded. # Set it to YES to include the internal documentation. INTERNAL_DOCS = NO # If the CASE_SENSE_NAMES tag is set to NO then Doxygen will only generate # file names in lower-case letters. If set to YES upper-case letters are also # allowed. This is useful if you have classes or files whose names only differ # in case and if your file system supports case sensitive file names. Windows # and Mac users are advised to set this option to NO. CASE_SENSE_NAMES = YES # If the HIDE_SCOPE_NAMES tag is set to NO (the default) then Doxygen # will show members with their full class and namespace scopes in the # documentation. If set to YES the scope will be hidden. HIDE_SCOPE_NAMES = NO # If the SHOW_INCLUDE_FILES tag is set to YES (the default) then Doxygen # will put a list of the files that are included by a file in the documentation # of that file. SHOW_INCLUDE_FILES = YES # If the INLINE_INFO tag is set to YES (the default) then a tag [inline] # is inserted in the documentation for inline members. INLINE_INFO = YES # If the SORT_MEMBER_DOCS tag is set to YES (the default) then doxygen # will sort the (detailed) documentation of file and class members # alphabetically by member name. If set to NO the members will appear in # declaration order. SORT_MEMBER_DOCS = YES # If the SORT_BRIEF_DOCS tag is set to YES then doxygen will sort the # brief documentation of file, namespace and class members alphabetically # by member name. If set to NO (the default) the members will appear in # declaration order. SORT_BRIEF_DOCS = NO # If the SORT_GROUP_NAMES tag is set to YES then doxygen will sort the # hierarchy of group names into alphabetical order. If set to NO (the default) # the group names will appear in their defined order. SORT_GROUP_NAMES = NO # If the SORT_BY_SCOPE_NAME tag is set to YES, the class list will be # sorted by fully-qualified names, including namespaces. If set to # NO (the default), the class list will be sorted only by class name, # not including the namespace part. # Note: This option is not very useful if HIDE_SCOPE_NAMES is set to YES. # Note: This option applies only to the class list, not to the # alphabetical list. SORT_BY_SCOPE_NAME = YES # The GENERATE_TODOLIST tag can be used to enable (YES) or # disable (NO) the todo list. This list is created by putting \todo # commands in the documentation. GENERATE_TODOLIST = YES # The GENERATE_TESTLIST tag can be used to enable (YES) or # disable (NO) the test list. This list is created by putting \test # commands in the documentation. GENERATE_TESTLIST = YES # The GENERATE_BUGLIST tag can be used to enable (YES) or # disable (NO) the bug list. This list is created by putting \bug # commands in the documentation. GENERATE_BUGLIST = YES # The GENERATE_DEPRECATEDLIST tag can be used to enable (YES) or # disable (NO) the deprecated list. This list is created by putting # \deprecated commands in the documentation. GENERATE_DEPRECATEDLIST= YES # The ENABLED_SECTIONS tag can be used to enable conditional # documentation sections, marked by \if sectionname ... \endif. ENABLED_SECTIONS = # The MAX_INITIALIZER_LINES tag determines the maximum number of lines # the initial value of a variable or define consists of for it to appear in # the documentation. If the initializer consists of more lines than specified # here it will be hidden. Use a value of 0 to hide initializers completely. # The appearance of the initializer of individual variables and defines in the # documentation can be controlled using \showinitializer or \hideinitializer # command in the documentation regardless of this setting. MAX_INITIALIZER_LINES = 30 # Set the SHOW_USED_FILES tag to NO to disable the list of files generated # at the bottom of the documentation of classes and structs. If set to YES the # list will mention the files that were used to generate the documentation. SHOW_USED_FILES = YES # If the sources in your project are distributed over multiple directories # then setting the SHOW_DIRECTORIES tag to YES will show the directory hierarchy # in the documentation. The default is NO. SHOW_DIRECTORIES = NO # Set the SHOW_FILES tag to NO to disable the generation of the Files page. # This will remove the Files entry from the Quick Index and from the # Folder Tree View (if specified). The default is YES. SHOW_FILES = YES # Set the SHOW_NAMESPACES tag to NO to disable the generation of the # Namespaces page. # This will remove the Namespaces entry from the Quick Index # and from the Folder Tree View (if specified). The default is YES. SHOW_NAMESPACES = YES # The FILE_VERSION_FILTER tag can be used to specify a program or script that # doxygen should invoke to get the current version for each file (typically from # the version control system). Doxygen will invoke the program by executing (via # popen()) the command , where is the value of # the FILE_VERSION_FILTER tag, and is the name of an input file # provided by doxygen. Whatever the program writes to standard output # is used as the file version. See the manual for examples. FILE_VERSION_FILTER = # The LAYOUT_FILE tag can be used to specify a layout file which will be parsed by # doxygen. The layout file controls the global structure of the generated output files # in an output format independent way. The create the layout file that represents # doxygen's defaults, run doxygen with the -l option. You can optionally specify a # file name after the option, if omitted DoxygenLayout.xml will be used as the name # of the layout file. LAYOUT_FILE = #--------------------------------------------------------------------------- # configuration options related to warning and progress messages #--------------------------------------------------------------------------- # The QUIET tag can be used to turn on/off the messages that are generated # by doxygen. Possible values are YES and NO. If left blank NO is used. QUIET = NO # The WARNINGS tag can be used to turn on/off the warning messages that are # generated by doxygen. Possible values are YES and NO. If left blank # NO is used. WARNINGS = YES # If WARN_IF_UNDOCUMENTED is set to YES, then doxygen will generate warnings # for undocumented members. If EXTRACT_ALL is set to YES then this flag will # automatically be disabled. WARN_IF_UNDOCUMENTED = YES # If WARN_IF_DOC_ERROR is set to YES, doxygen will generate warnings for # potential errors in the documentation, such as not documenting some # parameters in a documented function, or documenting parameters that # don't exist or using markup commands wrongly. WARN_IF_DOC_ERROR = YES # This WARN_NO_PARAMDOC option can be abled to get warnings for # functions that are documented, but have no documentation for their parameters # or return value. If set to NO (the default) doxygen will only warn about # wrong or incomplete parameter documentation, but not about the absence of # documentation. WARN_NO_PARAMDOC = NO # The WARN_FORMAT tag determines the format of the warning messages that # doxygen can produce. The string should contain the $file, $line, and $text # tags, which will be replaced by the file and line number from which the # warning originated and the warning text. Optionally the format may contain # $version, which will be replaced by the version of the file (if it could # be obtained via FILE_VERSION_FILTER) WARN_FORMAT = "$file:$line: $text" # The WARN_LOGFILE tag can be used to specify a file to which warning # and error messages should be written. If left blank the output is written # to stderr. WARN_LOGFILE = #--------------------------------------------------------------------------- # configuration options related to the input files #--------------------------------------------------------------------------- # The INPUT tag can be used to specify the files and/or directories that contain # documented source files. You may enter file names like "myfile.cpp" or # directories like "/usr/src/myproject". Separate the files or directories # with spaces. INPUT = ./src/stimfit/gui/app.h \ ./src/stimfit/gui/copygrid.h \ ./src/stimfit/gui/doc.h \ ./src/stimfit/gui/childframe.h \ ./src/stimfit/gui/parentframe.h \ ./src/stimfit/gui/graph.h \ ./src/stimfit/gui/printout.h \ ./src/stimfit/gui/stfcheckbox.h \ ./src/stimfit/gui/table.h \ ./src/stimfit/gui/view.h \ ./src/stimfit/gui/zoom.h \ ./src/libstfio/channel.h \ ./src/libstfio/recording.h \ ./src/libstfio/section.h \ ./src/libstfio/stfio.h \ ./src/stimfit/stf.h \ ./src/stimfit/math/fit.h \ ./src/stimfit/math/measure.h \ ./src/stimfit/math/funclib.h \ ./src/stimfit/math/stfmath.h \ ./src/libstfio/abf/abflib.h \ ./src/libstfio/ascii/asciilib.h \ ./src/libstfio/atf/atflib.h \ ./src/libstfio/axg/axglib.h \ ./src/libstfio/biosig/biosig.h \ ./src/libstfio/cfs/cfslib.h \ ./src/libstfio/heka/heka.h \ ./src/libstfio/hdf5/hdf5lib.h \ ./src/libstfio/igor/igorlib.h \ ./src/libstfio/son/sonlib.h \ ./src/stimfit/gui/dlgs/cursorsdlg.h \ ./src/stimfit/gui/dlgs/eventdlg.h \ ./src/stimfit/gui/dlgs/fitseldlg.h \ ./src/stimfit/gui/dlgs/smalldlgs.h \ ./src/stimfit/gui/usrdlg/usrdlg.h # This tag can be used to specify the character encoding of the source files # that doxygen parses. Internally doxygen uses the UTF-8 encoding, which is # also the default input encoding. Doxygen uses libiconv (or the iconv built # into libc) for the transcoding. See http://www.gnu.org/software/libiconv for # the list of possible encodings. INPUT_ENCODING = UTF-8 # If the value of the INPUT tag contains directories, you can use the # FILE_PATTERNS tag to specify one or more wildcard pattern (like *.cpp # and *.h) to filter out the source-files in the directories. If left # blank the following patterns are tested: # *.c *.cc *.cxx *.cpp *.c++ *.java *.ii *.ixx *.ipp *.i++ *.inl *.h *.hh *.hxx # *.hpp *.h++ *.idl *.odl *.cs *.php *.php3 *.inc *.m *.mm *.py *.f90 FILE_PATTERNS = # The RECURSIVE tag can be used to turn specify whether or not subdirectories # should be searched for input files as well. Possible values are YES and NO. # If left blank NO is used. RECURSIVE = NO # The EXCLUDE tag can be used to specify files and/or directories that should # excluded from the INPUT source files. This way you can easily exclude a # subdirectory from a directory tree whose root is specified with the INPUT tag. EXCLUDE = # The EXCLUDE_SYMLINKS tag can be used select whether or not files or # directories that are symbolic links (a Unix filesystem feature) are excluded # from the input. EXCLUDE_SYMLINKS = NO # If the value of the INPUT tag contains directories, you can use the # EXCLUDE_PATTERNS tag to specify one or more wildcard patterns to exclude # certain files from those directories. Note that the wildcards are matched # against the file with absolute path, so to exclude all test directories # for example use the pattern */test/* EXCLUDE_PATTERNS = # The EXCLUDE_SYMBOLS tag can be used to specify one or more symbol names # (namespaces, classes, functions, etc.) that should be excluded from the # output. The symbol name can be a fully qualified name, a word, or if the # wildcard * is used, a substring. Examples: ANamespace, AClass, # AClass::ANamespace, ANamespace::*Test EXCLUDE_SYMBOLS = # The EXAMPLE_PATH tag can be used to specify one or more files or # directories that contain example code fragments that are included (see # the \include command). EXAMPLE_PATH = # If the value of the EXAMPLE_PATH tag contains directories, you can use the # EXAMPLE_PATTERNS tag to specify one or more wildcard pattern (like *.cpp # and *.h) to filter out the source-files in the directories. If left # blank all files are included. EXAMPLE_PATTERNS = # If the EXAMPLE_RECURSIVE tag is set to YES then subdirectories will be # searched for input files to be used with the \include or \dontinclude # commands irrespective of the value of the RECURSIVE tag. # Possible values are YES and NO. If left blank NO is used. EXAMPLE_RECURSIVE = NO # The IMAGE_PATH tag can be used to specify one or more files or # directories that contain image that are included in the documentation (see # the \image command). IMAGE_PATH = # The INPUT_FILTER tag can be used to specify a program that doxygen should # invoke to filter for each input file. Doxygen will invoke the filter program # by executing (via popen()) the command , where # is the value of the INPUT_FILTER tag, and is the name of an # input file. Doxygen will then use the output that the filter program writes # to standard output. # If FILTER_PATTERNS is specified, this tag will be # ignored. INPUT_FILTER = # The FILTER_PATTERNS tag can be used to specify filters on a per file pattern # basis. # Doxygen will compare the file name with each pattern and apply the # filter if there is a match. # The filters are a list of the form: # pattern=filter (like *.cpp=my_cpp_filter). See INPUT_FILTER for further # info on how filters are used. If FILTER_PATTERNS is empty, INPUT_FILTER # is applied to all files. FILTER_PATTERNS = # If the FILTER_SOURCE_FILES tag is set to YES, the input filter (if set using # INPUT_FILTER) will be used to filter the input files when producing source # files to browse (i.e. when SOURCE_BROWSER is set to YES). FILTER_SOURCE_FILES = NO #--------------------------------------------------------------------------- # configuration options related to source browsing #--------------------------------------------------------------------------- # If the SOURCE_BROWSER tag is set to YES then a list of source files will # be generated. Documented entities will be cross-referenced with these sources. # Note: To get rid of all source code in the generated output, make sure also # VERBATIM_HEADERS is set to NO. SOURCE_BROWSER = NO # Setting the INLINE_SOURCES tag to YES will include the body # of functions and classes directly in the documentation. INLINE_SOURCES = NO # Setting the STRIP_CODE_COMMENTS tag to YES (the default) will instruct # doxygen to hide any special comment blocks from generated source code # fragments. Normal C and C++ comments will always remain visible. STRIP_CODE_COMMENTS = YES # If the REFERENCED_BY_RELATION tag is set to YES # then for each documented function all documented # functions referencing it will be listed. REFERENCED_BY_RELATION = YES # If the REFERENCES_RELATION tag is set to YES # then for each documented function all documented entities # called/used by that function will be listed. REFERENCES_RELATION = YES # If the REFERENCES_LINK_SOURCE tag is set to YES (the default) # and SOURCE_BROWSER tag is set to YES, then the hyperlinks from # functions in REFERENCES_RELATION and REFERENCED_BY_RELATION lists will # link to the source code. # Otherwise they will link to the documentation. REFERENCES_LINK_SOURCE = YES # If the USE_HTAGS tag is set to YES then the references to source code # will point to the HTML generated by the htags(1) tool instead of doxygen # built-in source browser. The htags tool is part of GNU's global source # tagging system (see http://www.gnu.org/software/global/global.html). You # will need version 4.8.6 or higher. USE_HTAGS = NO # If the VERBATIM_HEADERS tag is set to YES (the default) then Doxygen # will generate a verbatim copy of the header file for each class for # which an include is specified. Set to NO to disable this. VERBATIM_HEADERS = YES #--------------------------------------------------------------------------- # configuration options related to the alphabetical class index #--------------------------------------------------------------------------- # If the ALPHABETICAL_INDEX tag is set to YES, an alphabetical index # of all compounds will be generated. Enable this if the project # contains a lot of classes, structs, unions or interfaces. ALPHABETICAL_INDEX = NO # If the alphabetical index is enabled (see ALPHABETICAL_INDEX) then # the COLS_IN_ALPHA_INDEX tag can be used to specify the number of columns # in which this list will be split (can be a number in the range [1..20]) COLS_IN_ALPHA_INDEX = 5 # In case all classes in a project start with a common prefix, all # classes will be put under the same header in the alphabetical index. # The IGNORE_PREFIX tag can be used to specify one or more prefixes that # should be ignored while generating the index headers. IGNORE_PREFIX = #--------------------------------------------------------------------------- # configuration options related to the HTML output #--------------------------------------------------------------------------- # If the GENERATE_HTML tag is set to YES (the default) Doxygen will # generate HTML output. GENERATE_HTML = YES # The HTML_OUTPUT tag is used to specify where the HTML docs will be put. # If a relative path is entered the value of OUTPUT_DIRECTORY will be # put in front of it. If left blank `html' will be used as the default path. HTML_OUTPUT = html # The HTML_FILE_EXTENSION tag can be used to specify the file extension for # each generated HTML page (for example: .htm,.php,.asp). If it is left blank # doxygen will generate files with .html extension. HTML_FILE_EXTENSION = .html # The HTML_HEADER tag can be used to specify a personal HTML header for # each generated HTML page. If it is left blank doxygen will generate a # standard header. HTML_HEADER = # The HTML_FOOTER tag can be used to specify a personal HTML footer for # each generated HTML page. If it is left blank doxygen will generate a # standard footer. HTML_FOOTER = # The HTML_STYLESHEET tag can be used to specify a user-defined cascading # style sheet that is used by each HTML page. It can be used to # fine-tune the look of the HTML output. If the tag is left blank doxygen # will generate a default style sheet. Note that doxygen will try to copy # the style sheet file to the HTML output directory, so don't put your own # stylesheet in the HTML output directory as well, or it will be erased! HTML_STYLESHEET = # If the HTML_ALIGN_MEMBERS tag is set to YES, the members of classes, # files or namespaces will be aligned in HTML using tables. If set to # NO a bullet list will be used. HTML_ALIGN_MEMBERS = YES # If the HTML_DYNAMIC_SECTIONS tag is set to YES then the generated HTML # documentation will contain sections that can be hidden and shown after the # page has loaded. For this to work a browser that supports # JavaScript and DHTML is required (for instance Mozilla 1.0+, Firefox # Netscape 6.0+, Internet explorer 5.0+, Konqueror, or Safari). HTML_DYNAMIC_SECTIONS = NO # If the GENERATE_DOCSET tag is set to YES, additional index files # will be generated that can be used as input for Apple's Xcode 3 # integrated development environment, introduced with OSX 10.5 (Leopard). # To create a documentation set, doxygen will generate a Makefile in the # HTML output directory. Running make will produce the docset in that # directory and running "make install" will install the docset in # ~/Library/Developer/Shared/Documentation/DocSets so that Xcode will find # it at startup. # See http://developer.apple.com/tools/creatingdocsetswithdoxygen.html for more information. GENERATE_DOCSET = NO # When GENERATE_DOCSET tag is set to YES, this tag determines the name of the # feed. A documentation feed provides an umbrella under which multiple # documentation sets from a single provider (such as a company or product suite) # can be grouped. DOCSET_FEEDNAME = "Doxygen generated docs" # When GENERATE_DOCSET tag is set to YES, this tag specifies a string that # should uniquely identify the documentation set bundle. This should be a # reverse domain-name style string, e.g. com.mycompany.MyDocSet. Doxygen # will append .docset to the name. DOCSET_BUNDLE_ID = org.doxygen.Project # If the GENERATE_HTMLHELP tag is set to YES, additional index files # will be generated that can be used as input for tools like the # Microsoft HTML help workshop to generate a compiled HTML help file (.chm) # of the generated HTML documentation. GENERATE_HTMLHELP = NO # If the GENERATE_HTMLHELP tag is set to YES, the CHM_FILE tag can # be used to specify the file name of the resulting .chm file. You # can add a path in front of the file if the result should not be # written to the html output directory. CHM_FILE = # If the GENERATE_HTMLHELP tag is set to YES, the HHC_LOCATION tag can # be used to specify the location (absolute path including file name) of # the HTML help compiler (hhc.exe). If non-empty doxygen will try to run # the HTML help compiler on the generated index.hhp. HHC_LOCATION = # If the GENERATE_HTMLHELP tag is set to YES, the GENERATE_CHI flag # controls if a separate .chi index file is generated (YES) or that # it should be included in the master .chm file (NO). GENERATE_CHI = NO # If the GENERATE_HTMLHELP tag is set to YES, the CHM_INDEX_ENCODING # is used to encode HtmlHelp index (hhk), content (hhc) and project file # content. CHM_INDEX_ENCODING = # If the GENERATE_HTMLHELP tag is set to YES, the BINARY_TOC flag # controls whether a binary table of contents is generated (YES) or a # normal table of contents (NO) in the .chm file. BINARY_TOC = NO # The TOC_EXPAND flag can be set to YES to add extra items for group members # to the contents of the HTML help documentation and to the tree view. TOC_EXPAND = NO # If the GENERATE_QHP tag is set to YES and both QHP_NAMESPACE and QHP_VIRTUAL_FOLDER # are set, an additional index file will be generated that can be used as input for # Qt's qhelpgenerator to generate a Qt Compressed Help (.qch) of the generated # HTML documentation. GENERATE_QHP = NO # If the QHG_LOCATION tag is specified, the QCH_FILE tag can # be used to specify the file name of the resulting .qch file. # The path specified is relative to the HTML output folder. QCH_FILE = # The QHP_NAMESPACE tag specifies the namespace to use when generating # Qt Help Project output. For more information please see # http://doc.trolltech.com/qthelpproject.html#namespace QHP_NAMESPACE = # The QHP_VIRTUAL_FOLDER tag specifies the namespace to use when generating # Qt Help Project output. For more information please see # http://doc.trolltech.com/qthelpproject.html#virtual-folders QHP_VIRTUAL_FOLDER = doc # If QHP_CUST_FILTER_NAME is set, it specifies the name of a custom filter to add. # For more information please see # http://doc.trolltech.com/qthelpproject.html#custom-filters QHP_CUST_FILTER_NAME = # The QHP_CUST_FILT_ATTRS tag specifies the list of the attributes of the custom filter to add.For more information please see # Qt Help Project / Custom Filters. QHP_CUST_FILTER_ATTRS = # The QHP_SECT_FILTER_ATTRS tag specifies the list of the attributes this project's # filter section matches. # Qt Help Project / Filter Attributes. QHP_SECT_FILTER_ATTRS = # If the GENERATE_QHP tag is set to YES, the QHG_LOCATION tag can # be used to specify the location of Qt's qhelpgenerator. # If non-empty doxygen will try to run qhelpgenerator on the generated # .qhp file. QHG_LOCATION = # The DISABLE_INDEX tag can be used to turn on/off the condensed index at # top of each HTML page. The value NO (the default) enables the index and # the value YES disables it. DISABLE_INDEX = NO # This tag can be used to set the number of enum values (range [1..20]) # that doxygen will group on one line in the generated HTML documentation. ENUM_VALUES_PER_LINE = 4 # The GENERATE_TREEVIEW tag is used to specify whether a tree-like index # structure should be generated to display hierarchical information. # If the tag value is set to FRAME, a side panel will be generated # containing a tree-like index structure (just like the one that # is generated for HTML Help). For this to work a browser that supports # JavaScript, DHTML, CSS and frames is required (for instance Mozilla 1.0+, # Netscape 6.0+, Internet explorer 5.0+, or Konqueror). Windows users are # probably better off using the HTML help feature. Other possible values # for this tag are: HIERARCHIES, which will generate the Groups, Directories, # and Class Hierarchy pages using a tree view instead of an ordered list; # ALL, which combines the behavior of FRAME and HIERARCHIES; and NONE, which # disables this behavior completely. For backwards compatibility with previous # releases of Doxygen, the values YES and NO are equivalent to FRAME and NONE # respectively. GENERATE_TREEVIEW = NO # If the treeview is enabled (see GENERATE_TREEVIEW) then this tag can be # used to set the initial width (in pixels) of the frame in which the tree # is shown. TREEVIEW_WIDTH = 250 # Use this tag to change the font size of Latex formulas included # as images in the HTML documentation. The default is 10. Note that # when you change the font size after a successful doxygen run you need # to manually remove any form_*.png images from the HTML output directory # to force them to be regenerated. FORMULA_FONTSIZE = 10 #--------------------------------------------------------------------------- # configuration options related to the LaTeX output #--------------------------------------------------------------------------- # If the GENERATE_LATEX tag is set to YES (the default) Doxygen will # generate Latex output. GENERATE_LATEX = YES # The LATEX_OUTPUT tag is used to specify where the LaTeX docs will be put. # If a relative path is entered the value of OUTPUT_DIRECTORY will be # put in front of it. If left blank `latex' will be used as the default path. LATEX_OUTPUT = latex # The LATEX_CMD_NAME tag can be used to specify the LaTeX command name to be # invoked. If left blank `latex' will be used as the default command name. LATEX_CMD_NAME = latex # The MAKEINDEX_CMD_NAME tag can be used to specify the command name to # generate index for LaTeX. If left blank `makeindex' will be used as the # default command name. MAKEINDEX_CMD_NAME = makeindex # If the COMPACT_LATEX tag is set to YES Doxygen generates more compact # LaTeX documents. This may be useful for small projects and may help to # save some trees in general. COMPACT_LATEX = NO # The PAPER_TYPE tag can be used to set the paper type that is used # by the printer. Possible values are: a4, a4wide, letter, legal and # executive. If left blank a4wide will be used. PAPER_TYPE = a4wide # The EXTRA_PACKAGES tag can be to specify one or more names of LaTeX # packages that should be included in the LaTeX output. EXTRA_PACKAGES = lmodern \ textcomp \ amsmath # The LATEX_HEADER tag can be used to specify a personal LaTeX header for # the generated latex document. The header should contain everything until # the first chapter. If it is left blank doxygen will generate a # standard header. Notice: only use this tag if you know what you are doing! LATEX_HEADER = # If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated # is prepared for conversion to pdf (using ps2pdf). The pdf file will # contain links (just like the HTML output) instead of page references # This makes the output suitable for online browsing using a pdf viewer. PDF_HYPERLINKS = YES # If the USE_PDFLATEX tag is set to YES, pdflatex will be used instead of # plain latex in the generated Makefile. Set this option to YES to get a # higher quality PDF documentation. USE_PDFLATEX = YES # If the LATEX_BATCHMODE tag is set to YES, doxygen will add the \\batchmode. # command to the generated LaTeX files. This will instruct LaTeX to keep # running if errors occur, instead of asking the user for help. # This option is also used when generating formulas in HTML. LATEX_BATCHMODE = NO # If LATEX_HIDE_INDICES is set to YES then doxygen will not # include the index chapters (such as File Index, Compound Index, etc.) # in the output. LATEX_HIDE_INDICES = NO #--------------------------------------------------------------------------- # configuration options related to the RTF output #--------------------------------------------------------------------------- # If the GENERATE_RTF tag is set to YES Doxygen will generate RTF output # The RTF output is optimized for Word 97 and may not look very pretty with # other RTF readers or editors. GENERATE_RTF = NO # The RTF_OUTPUT tag is used to specify where the RTF docs will be put. # If a relative path is entered the value of OUTPUT_DIRECTORY will be # put in front of it. If left blank `rtf' will be used as the default path. RTF_OUTPUT = rtf # If the COMPACT_RTF tag is set to YES Doxygen generates more compact # RTF documents. This may be useful for small projects and may help to # save some trees in general. COMPACT_RTF = NO # If the RTF_HYPERLINKS tag is set to YES, the RTF that is generated # will contain hyperlink fields. The RTF file will # contain links (just like the HTML output) instead of page references. # This makes the output suitable for online browsing using WORD or other # programs which support those fields. # Note: wordpad (write) and others do not support links. RTF_HYPERLINKS = NO # Load stylesheet definitions from file. Syntax is similar to doxygen's # config file, i.e. a series of assignments. You only have to provide # replacements, missing definitions are set to their default value. RTF_STYLESHEET_FILE = # Set optional variables used in the generation of an rtf document. # Syntax is similar to doxygen's config file. RTF_EXTENSIONS_FILE = #--------------------------------------------------------------------------- # configuration options related to the man page output #--------------------------------------------------------------------------- # If the GENERATE_MAN tag is set to YES (the default) Doxygen will # generate man pages GENERATE_MAN = NO # The MAN_OUTPUT tag is used to specify where the man pages will be put. # If a relative path is entered the value of OUTPUT_DIRECTORY will be # put in front of it. If left blank `man' will be used as the default path. MAN_OUTPUT = man # The MAN_EXTENSION tag determines the extension that is added to # the generated man pages (default is the subroutine's section .3) MAN_EXTENSION = .3 # If the MAN_LINKS tag is set to YES and Doxygen generates man output, # then it will generate one additional man file for each entity # documented in the real man page(s). These additional files # only source the real man page, but without them the man command # would be unable to find the correct page. The default is NO. MAN_LINKS = NO #--------------------------------------------------------------------------- # configuration options related to the XML output #--------------------------------------------------------------------------- # If the GENERATE_XML tag is set to YES Doxygen will # generate an XML file that captures the structure of # the code including all documentation. GENERATE_XML = NO # The XML_OUTPUT tag is used to specify where the XML pages will be put. # If a relative path is entered the value of OUTPUT_DIRECTORY will be # put in front of it. If left blank `xml' will be used as the default path. XML_OUTPUT = xml # The XML_SCHEMA tag can be used to specify an XML schema, # which can be used by a validating XML parser to check the # syntax of the XML files. XML_SCHEMA = # The XML_DTD tag can be used to specify an XML DTD, # which can be used by a validating XML parser to check the # syntax of the XML files. XML_DTD = # If the XML_PROGRAMLISTING tag is set to YES Doxygen will # dump the program listings (including syntax highlighting # and cross-referencing information) to the XML output. Note that # enabling this will significantly increase the size of the XML output. XML_PROGRAMLISTING = YES #--------------------------------------------------------------------------- # configuration options for the AutoGen Definitions output #--------------------------------------------------------------------------- # If the GENERATE_AUTOGEN_DEF tag is set to YES Doxygen will # generate an AutoGen Definitions (see autogen.sf.net) file # that captures the structure of the code including all # documentation. Note that this feature is still experimental # and incomplete at the moment. GENERATE_AUTOGEN_DEF = NO #--------------------------------------------------------------------------- # configuration options related to the Perl module output #--------------------------------------------------------------------------- # If the GENERATE_PERLMOD tag is set to YES Doxygen will # generate a Perl module file that captures the structure of # the code including all documentation. Note that this # feature is still experimental and incomplete at the # moment. GENERATE_PERLMOD = NO # If the PERLMOD_LATEX tag is set to YES Doxygen will generate # the necessary Makefile rules, Perl scripts and LaTeX code to be able # to generate PDF and DVI output from the Perl module output. PERLMOD_LATEX = NO # If the PERLMOD_PRETTY tag is set to YES the Perl module output will be # nicely formatted so it can be parsed by a human reader. # This is useful # if you want to understand what is going on. # On the other hand, if this # tag is set to NO the size of the Perl module output will be much smaller # and Perl will parse it just the same. PERLMOD_PRETTY = YES # The names of the make variables in the generated doxyrules.make file # are prefixed with the string contained in PERLMOD_MAKEVAR_PREFIX. # This is useful so different doxyrules.make files included by the same # Makefile don't overwrite each other's variables. PERLMOD_MAKEVAR_PREFIX = #--------------------------------------------------------------------------- # Configuration options related to the preprocessor #--------------------------------------------------------------------------- # If the ENABLE_PREPROCESSING tag is set to YES (the default) Doxygen will # evaluate all C-preprocessor directives found in the sources and include # files. ENABLE_PREPROCESSING = YES # If the MACRO_EXPANSION tag is set to YES Doxygen will expand all macro # names in the source code. If set to NO (the default) only conditional # compilation will be performed. Macro expansion can be done in a controlled # way by setting EXPAND_ONLY_PREDEF to YES. MACRO_EXPANSION = NO # If the EXPAND_ONLY_PREDEF and MACRO_EXPANSION tags are both set to YES # then the macro expansion is limited to the macros specified with the # PREDEFINED and EXPAND_AS_DEFINED tags. EXPAND_ONLY_PREDEF = NO # If the SEARCH_INCLUDES tag is set to YES (the default) the includes files # in the INCLUDE_PATH (see below) will be search if a #include is found. SEARCH_INCLUDES = YES # The INCLUDE_PATH tag can be used to specify one or more directories that # contain include files that are not input files but should be processed by # the preprocessor. INCLUDE_PATH = # You can use the INCLUDE_FILE_PATTERNS tag to specify one or more wildcard # patterns (like *.h and *.hpp) to filter out the header-files in the # directories. If left blank, the patterns specified with FILE_PATTERNS will # be used. INCLUDE_FILE_PATTERNS = # The PREDEFINED tag can be used to specify one or more macro names that # are defined before the preprocessor is started (similar to the -D option of # gcc). The argument of the tag is a list of macros of the form: name # or name=definition (no spaces). If the definition and the = are # omitted =1 is assumed. To prevent a macro definition from being # undefined via #undef or recursively expanded use the := operator # instead of the = operator. PREDEFINED = _WINDOWS \ __UNIX__ \ WITH_PYTHON # If the MACRO_EXPANSION and EXPAND_ONLY_PREDEF tags are set to YES then # this tag can be used to specify a list of macro names that should be expanded. # The macro definition that is found in the sources will be used. # Use the PREDEFINED tag if you want to use a different macro definition. EXPAND_AS_DEFINED = # If the SKIP_FUNCTION_MACROS tag is set to YES (the default) then # doxygen's preprocessor will remove all function-like macros that are alone # on a line, have an all uppercase name, and do not end with a semicolon. Such # function macros are typically used for boiler-plate code, and will confuse # the parser if not removed. SKIP_FUNCTION_MACROS = YES #--------------------------------------------------------------------------- # Configuration::additions related to external references #--------------------------------------------------------------------------- # The TAGFILES option can be used to specify one or more tagfiles. # Optionally an initial location of the external documentation # can be added for each tagfile. The format of a tag file without # this location is as follows: # # TAGFILES = file1 file2 ... # Adding location for the tag files is done as follows: # # TAGFILES = file1=loc1 "file2 = loc2" ... # where "loc1" and "loc2" can be relative or absolute paths or # URLs. If a location is present for each tag, the installdox tool # does not have to be run to correct the links. # Note that each tag file must have a unique name # (where the name does NOT include the path) # If a tag file is not located in the directory in which doxygen # is run, you must also specify the path to the tagfile here. TAGFILES = # When a file name is specified after GENERATE_TAGFILE, doxygen will create # a tag file that is based on the input files it reads. GENERATE_TAGFILE = # If the ALLEXTERNALS tag is set to YES all external classes will be listed # in the class index. If set to NO only the inherited external classes # will be listed. ALLEXTERNALS = NO # If the EXTERNAL_GROUPS tag is set to YES all external groups will be listed # in the modules index. If set to NO, only the current project's groups will # be listed. EXTERNAL_GROUPS = YES # The PERL_PATH should be the absolute path and name of the perl script # interpreter (i.e. the result of `which perl'). PERL_PATH = /usr/bin/perl #--------------------------------------------------------------------------- # Configuration options related to the dot tool #--------------------------------------------------------------------------- # If the CLASS_DIAGRAMS tag is set to YES (the default) Doxygen will # generate a inheritance diagram (in HTML, RTF and LaTeX) for classes with base # or super classes. Setting the tag to NO turns the diagrams off. Note that # this option is superseded by the HAVE_DOT option below. This is only a # fallback. It is recommended to install and use dot, since it yields more # powerful graphs. CLASS_DIAGRAMS = YES # You can define message sequence charts within doxygen comments using the \msc # command. Doxygen will then run the mscgen tool (see # http://www.mcternan.me.uk/mscgen/) to produce the chart and insert it in the # documentation. The MSCGEN_PATH tag allows you to specify the directory where # the mscgen tool resides. If left empty the tool is assumed to be found in the # default search path. MSCGEN_PATH = # If set to YES, the inheritance and collaboration graphs will hide # inheritance and usage relations if the target is undocumented # or is not a class. HIDE_UNDOC_RELATIONS = YES # If you set the HAVE_DOT tag to YES then doxygen will assume the dot tool is # available from the path. This tool is part of Graphviz, a graph visualization # toolkit from AT&T and Lucent Bell Labs. The other options in this section # have no effect if this option is set to NO (the default) HAVE_DOT = YES # By default doxygen will write a font called FreeSans.ttf to the output # directory and reference it in all dot files that doxygen generates. This # font does not include all possible unicode characters however, so when you need # these (or just want a differently looking font) you can specify the font name # using DOT_FONTNAME. You need need to make sure dot is able to find the font, # which can be done by putting it in a standard location or by setting the # DOTFONTPATH environment variable or by setting DOT_FONTPATH to the directory # containing the font. DOT_FONTNAME = FreeSans # The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs. # The default size is 10pt. DOT_FONTSIZE = 10 # By default doxygen will tell dot to use the output directory to look for the # FreeSans.ttf font (which doxygen will put there itself). If you specify a # different font using DOT_FONTNAME you can set the path where dot # can find it using this tag. DOT_FONTPATH = # If the CLASS_GRAPH and HAVE_DOT tags are set to YES then doxygen # will generate a graph for each documented class showing the direct and # indirect inheritance relations. Setting this tag to YES will force the # the CLASS_DIAGRAMS tag to NO. CLASS_GRAPH = YES # If the COLLABORATION_GRAPH and HAVE_DOT tags are set to YES then doxygen # will generate a graph for each documented class showing the direct and # indirect implementation dependencies (inheritance, containment, and # class references variables) of the class with other documented classes. COLLABORATION_GRAPH = YES # If the GROUP_GRAPHS and HAVE_DOT tags are set to YES then doxygen # will generate a graph for groups, showing the direct groups dependencies GROUP_GRAPHS = YES # If the UML_LOOK tag is set to YES doxygen will generate inheritance and # collaboration diagrams in a style similar to the OMG's Unified Modeling # Language. UML_LOOK = NO # If set to YES, the inheritance and collaboration graphs will show the # relations between templates and their instances. TEMPLATE_RELATIONS = NO # If the ENABLE_PREPROCESSING, SEARCH_INCLUDES, INCLUDE_GRAPH, and HAVE_DOT # tags are set to YES then doxygen will generate a graph for each documented # file showing the direct and indirect include dependencies of the file with # other documented files. INCLUDE_GRAPH = YES # If the ENABLE_PREPROCESSING, SEARCH_INCLUDES, INCLUDED_BY_GRAPH, and # HAVE_DOT tags are set to YES then doxygen will generate a graph for each # documented header file showing the documented files that directly or # indirectly include this file. INCLUDED_BY_GRAPH = YES # If the CALL_GRAPH and HAVE_DOT options are set to YES then # doxygen will generate a call dependency graph for every global function # or class method. Note that enabling this option will significantly increase # the time of a run. So in most cases it will be better to enable call graphs # for selected functions only using the \callgraph command. CALL_GRAPH = NO # If the CALLER_GRAPH and HAVE_DOT tags are set to YES then # doxygen will generate a caller dependency graph for every global function # or class method. Note that enabling this option will significantly increase # the time of a run. So in most cases it will be better to enable caller # graphs for selected functions only using the \callergraph command. CALLER_GRAPH = NO # If the GRAPHICAL_HIERARCHY and HAVE_DOT tags are set to YES then doxygen # will graphical hierarchy of all classes instead of a textual one. GRAPHICAL_HIERARCHY = YES # If the DIRECTORY_GRAPH, SHOW_DIRECTORIES and HAVE_DOT tags are set to YES # then doxygen will show the dependencies a directory has on other directories # in a graphical way. The dependency relations are determined by the #include # relations between the files in the directories. DIRECTORY_GRAPH = YES # The DOT_IMAGE_FORMAT tag can be used to set the image format of the images # generated by dot. Possible values are png, jpg, or gif # If left blank png will be used. DOT_IMAGE_FORMAT = png # The tag DOT_PATH can be used to specify the path where the dot tool can be # found. If left blank, it is assumed the dot tool can be found in the path. DOT_PATH = # The DOTFILE_DIRS tag can be used to specify one or more directories that # contain dot files that are included in the documentation (see the # \dotfile command). DOTFILE_DIRS = # The DOT_GRAPH_MAX_NODES tag can be used to set the maximum number of # nodes that will be shown in the graph. If the number of nodes in a graph # becomes larger than this value, doxygen will truncate the graph, which is # visualized by representing a node as a red box. Note that doxygen if the # number of direct children of the root node in a graph is already larger than # DOT_GRAPH_MAX_NODES then the graph will not be shown at all. Also note # that the size of a graph can be further restricted by MAX_DOT_GRAPH_DEPTH. DOT_GRAPH_MAX_NODES = 50 # The MAX_DOT_GRAPH_DEPTH tag can be used to set the maximum depth of the # graphs generated by dot. A depth value of 3 means that only nodes reachable # from the root by following a path via at most 3 edges will be shown. Nodes # that lay further from the root node will be omitted. Note that setting this # option to 1 or 2 may greatly reduce the computation time needed for large # code bases. Also note that the size of a graph can be further restricted by # DOT_GRAPH_MAX_NODES. Using a depth of 0 means no depth restriction. MAX_DOT_GRAPH_DEPTH = 0 # Set the DOT_TRANSPARENT tag to YES to generate images with a transparent # background. This is disabled by default, because dot on Windows does not # seem to support this out of the box. Warning: Depending on the platform used, # enabling this option may lead to badly anti-aliased labels on the edges of # a graph (i.e. they become hard to read). DOT_TRANSPARENT = NO # Set the DOT_MULTI_TARGETS tag to YES allow dot to generate multiple output # files in one run (i.e. multiple -o and -T options on the command line). This # makes dot run faster, but since only newer versions of dot (>1.8.10) # support this, this feature is disabled by default. DOT_MULTI_TARGETS = NO # If the GENERATE_LEGEND tag is set to YES (the default) Doxygen will # generate a legend page explaining the meaning of the various boxes and # arrows in the dot generated graphs. GENERATE_LEGEND = YES # If the DOT_CLEANUP tag is set to YES (the default) Doxygen will # remove the intermediate dot files that are used to generate # the various graphs. DOT_CLEANUP = YES #--------------------------------------------------------------------------- # Options related to the search engine #--------------------------------------------------------------------------- # The SEARCHENGINE tag specifies whether or not a search engine should be # used. If set to NO the values of all tags below this one will be ignored. SEARCHENGINE = NO # Enable the USE_MATHJAX option to render $\mbox{\LaTeX}$ formulas using # MathJax (see http://www.mathjax.org) which uses client side Javascript # for the rendering instead of using prerendered bitmaps. Use this if you # do not have LaTeX installed or if you want to formulas look prettier # in the HTML output. USE_MATHJAX = YES # The MATHJAX_EXTENSIONS tag can be used to specify one or MathJax extension # names that should be enabled during MathJax rendering. MATHJAX_EXTENSIONS = teX/AMSmath TeX/AMSsymbols # Use this tag to change the font size of LaTeX formulas included as images # in the HTML documentation. The default is 10. when you change the font # size after a successful doxygen run you need to manually remove any # form_*.png images from the HTML output directory to force them to be # regenerated. FORMULA_FONTSIZE = 16 stimfit-0.13.13/depcomp0000755000175000017500000004755612275704777011677 00000000000000#! /bin/sh # depcomp - compile a program generating dependencies as side-effects scriptversion=2011-12-04.11; # UTC # Copyright (C) 1999, 2000, 2003, 2004, 2005, 2006, 2007, 2009, 2010, # 2011 Free Software Foundation, Inc. # This program is free software; you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by # the Free Software Foundation; either version 2, or (at your option) # any later version. # This program is distributed in the hope that it will be useful, # but WITHOUT ANY WARRANTY; without even the implied warranty of # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the # GNU General Public License for more details. # You should have received a copy of the GNU General Public License # along with this program. If not, see . # As a special exception to the GNU General Public License, if you # distribute this file as part of a program that contains a # configuration script generated by Autoconf, you may include it under # the same distribution terms that you use for the rest of that program. # Originally written by Alexandre Oliva . case $1 in '') echo "$0: No command. Try \`$0 --help' for more information." 1>&2 exit 1; ;; -h | --h*) cat <<\EOF Usage: depcomp [--help] [--version] PROGRAM [ARGS] Run PROGRAMS ARGS to compile a file, generating dependencies as side-effects. Environment variables: depmode Dependency tracking mode. source Source file read by `PROGRAMS ARGS'. object Object file output by `PROGRAMS ARGS'. DEPDIR directory where to store dependencies. depfile Dependency file to output. tmpdepfile Temporary file to use when outputting dependencies. libtool Whether libtool is used (yes/no). Report bugs to . EOF exit $? ;; -v | --v*) echo "depcomp $scriptversion" exit $? ;; esac if test -z "$depmode" || test -z "$source" || test -z "$object"; then echo "depcomp: Variables source, object and depmode must be set" 1>&2 exit 1 fi # Dependencies for sub/bar.o or sub/bar.obj go into sub/.deps/bar.Po. depfile=${depfile-`echo "$object" | sed 's|[^\\/]*$|'${DEPDIR-.deps}'/&|;s|\.\([^.]*\)$|.P\1|;s|Pobj$|Po|'`} tmpdepfile=${tmpdepfile-`echo "$depfile" | sed 's/\.\([^.]*\)$/.T\1/'`} rm -f "$tmpdepfile" # Some modes work just like other modes, but use different flags. We # parameterize here, but still list the modes in the big case below, # to make depend.m4 easier to write. Note that we *cannot* use a case # here, because this file can only contain one case statement. if test "$depmode" = hp; then # HP compiler uses -M and no extra arg. gccflag=-M depmode=gcc fi if test "$depmode" = dashXmstdout; then # This is just like dashmstdout with a different argument. dashmflag=-xM depmode=dashmstdout fi cygpath_u="cygpath -u -f -" if test "$depmode" = msvcmsys; then # This is just like msvisualcpp but w/o cygpath translation. # Just convert the backslash-escaped backslashes to single forward # slashes to satisfy depend.m4 cygpath_u='sed s,\\\\,/,g' depmode=msvisualcpp fi if test "$depmode" = msvc7msys; then # This is just like msvc7 but w/o cygpath translation. # Just convert the backslash-escaped backslashes to single forward # slashes to satisfy depend.m4 cygpath_u='sed s,\\\\,/,g' depmode=msvc7 fi case "$depmode" in gcc3) ## gcc 3 implements dependency tracking that does exactly what ## we want. Yay! Note: for some reason libtool 1.4 doesn't like ## it if -MD -MP comes after the -MF stuff. Hmm. ## Unfortunately, FreeBSD c89 acceptance of flags depends upon ## the command line argument order; so add the flags where they ## appear in depend2.am. Note that the slowdown incurred here ## affects only configure: in makefiles, %FASTDEP% shortcuts this. for arg do case $arg in -c) set fnord "$@" -MT "$object" -MD -MP -MF "$tmpdepfile" "$arg" ;; *) set fnord "$@" "$arg" ;; esac shift # fnord shift # $arg done "$@" stat=$? if test $stat -eq 0; then : else rm -f "$tmpdepfile" exit $stat fi mv "$tmpdepfile" "$depfile" ;; gcc) ## There are various ways to get dependency output from gcc. Here's ## why we pick this rather obscure method: ## - Don't want to use -MD because we'd like the dependencies to end ## up in a subdir. Having to rename by hand is ugly. ## (We might end up doing this anyway to support other compilers.) ## - The DEPENDENCIES_OUTPUT environment variable makes gcc act like ## -MM, not -M (despite what the docs say). ## - Using -M directly means running the compiler twice (even worse ## than renaming). if test -z "$gccflag"; then gccflag=-MD, fi "$@" -Wp,"$gccflag$tmpdepfile" stat=$? if test $stat -eq 0; then : else rm -f "$tmpdepfile" exit $stat fi rm -f "$depfile" echo "$object : \\" > "$depfile" alpha=ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz ## The second -e expression handles DOS-style file names with drive letters. sed -e 's/^[^:]*: / /' \ -e 's/^['$alpha']:\/[^:]*: / /' < "$tmpdepfile" >> "$depfile" ## This next piece of magic avoids the `deleted header file' problem. ## The problem is that when a header file which appears in a .P file ## is deleted, the dependency causes make to die (because there is ## typically no way to rebuild the header). We avoid this by adding ## dummy dependencies for each header file. Too bad gcc doesn't do ## this for us directly. tr ' ' ' ' < "$tmpdepfile" | ## Some versions of gcc put a space before the `:'. On the theory ## that the space means something, we add a space to the output as ## well. hp depmode also adds that space, but also prefixes the VPATH ## to the object. Take care to not repeat it in the output. ## Some versions of the HPUX 10.20 sed can't process this invocation ## correctly. Breaking it into two sed invocations is a workaround. sed -e 's/^\\$//' -e '/^$/d' -e "s|.*$object$||" -e '/:$/d' \ | sed -e 's/$/ :/' >> "$depfile" rm -f "$tmpdepfile" ;; hp) # This case exists only to let depend.m4 do its work. It works by # looking at the text of this script. This case will never be run, # since it is checked for above. exit 1 ;; sgi) if test "$libtool" = yes; then "$@" "-Wp,-MDupdate,$tmpdepfile" else "$@" -MDupdate "$tmpdepfile" fi stat=$? if test $stat -eq 0; then : else rm -f "$tmpdepfile" exit $stat fi rm -f "$depfile" if test -f "$tmpdepfile"; then # yes, the sourcefile depend on other files echo "$object : \\" > "$depfile" # Clip off the initial element (the dependent). Don't try to be # clever and replace this with sed code, as IRIX sed won't handle # lines with more than a fixed number of characters (4096 in # IRIX 6.2 sed, 8192 in IRIX 6.5). We also remove comment lines; # the IRIX cc adds comments like `#:fec' to the end of the # dependency line. tr ' ' ' ' < "$tmpdepfile" \ | sed -e 's/^.*\.o://' -e 's/#.*$//' -e '/^$/ d' | \ tr ' ' ' ' >> "$depfile" echo >> "$depfile" # The second pass generates a dummy entry for each header file. tr ' ' ' ' < "$tmpdepfile" \ | sed -e 's/^.*\.o://' -e 's/#.*$//' -e '/^$/ d' -e 's/$/:/' \ >> "$depfile" else # The sourcefile does not contain any dependencies, so just # store a dummy comment line, to avoid errors with the Makefile # "include basename.Plo" scheme. echo "#dummy" > "$depfile" fi rm -f "$tmpdepfile" ;; aix) # The C for AIX Compiler uses -M and outputs the dependencies # in a .u file. In older versions, this file always lives in the # current directory. Also, the AIX compiler puts `$object:' at the # start of each line; $object doesn't have directory information. # Version 6 uses the directory in both cases. dir=`echo "$object" | sed -e 's|/[^/]*$|/|'` test "x$dir" = "x$object" && dir= base=`echo "$object" | sed -e 's|^.*/||' -e 's/\.o$//' -e 's/\.lo$//'` if test "$libtool" = yes; then tmpdepfile1=$dir$base.u tmpdepfile2=$base.u tmpdepfile3=$dir.libs/$base.u "$@" -Wc,-M else tmpdepfile1=$dir$base.u tmpdepfile2=$dir$base.u tmpdepfile3=$dir$base.u "$@" -M fi stat=$? if test $stat -eq 0; then : else rm -f "$tmpdepfile1" "$tmpdepfile2" "$tmpdepfile3" exit $stat fi for tmpdepfile in "$tmpdepfile1" "$tmpdepfile2" "$tmpdepfile3" do test -f "$tmpdepfile" && break done if test -f "$tmpdepfile"; then # Each line is of the form `foo.o: dependent.h'. # Do two passes, one to just change these to # `$object: dependent.h' and one to simply `dependent.h:'. sed -e "s,^.*\.[a-z]*:,$object:," < "$tmpdepfile" > "$depfile" # That's a tab and a space in the []. sed -e 's,^.*\.[a-z]*:[ ]*,,' -e 's,$,:,' < "$tmpdepfile" >> "$depfile" else # The sourcefile does not contain any dependencies, so just # store a dummy comment line, to avoid errors with the Makefile # "include basename.Plo" scheme. echo "#dummy" > "$depfile" fi rm -f "$tmpdepfile" ;; icc) # Intel's C compiler understands `-MD -MF file'. 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you can redistribute it and/or // modify it under the terms of the GNU General Public License // as published by the Free Software Foundation; either version 2 // of the License, or (at your option) any later version. // This program is distributed in the hope that it will be useful, // but WITHOUT ANY WARRANTY; without even the implied warranty of // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the // GNU General Public License for more details. // You should have received a copy of the GNU General Public License // along with this program; if not, write to the Free Software // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA. /*! \file stfio.cpp * \author Christoph Schmidt-Hieber * \date 2011-09-25 * \brief General functions for libstfio * * * Implements some general functions for libstfio */ // Copyright 2012 Alois Schloegl, IST Austria #include #include "stfio.h" // TODO #include "./ascii/asciilib.h" #include "./hdf5/hdf5lib.h" #include "./abf/abflib.h" #include "./atf/atflib.h" #include "./axg/axglib.h" #include "./igor/igorlib.h" #if (defined(WITH_BIOSIG) || defined(WITH_BIOSIG2)) #include "./biosig/biosiglib.h" #endif #include "./cfs/cfslib.h" #ifndef TEST_MINIMAL #include "./heka/hekalib.h" #else #if (!defined(WITH_BIOSIG) && !defined(WITH_BIOSIG2)) #error -DTEST_MINIMAL requires -DWITH_BIOSIG or -DWITH_BIOSIG2 #endif #endif #if 0 #include "./son/sonlib.h" #endif #ifdef _MSC_VER StfioDll long int lround(double x) { int i = (long int) x; if (x >= 0.0) { return ((x-i) >= 0.5) ? (i + 1) : (i); } else { return (-x+i >= 0.5) ? (i - 1) : (i); } } #endif stfio::StdoutProgressInfo::StdoutProgressInfo(const std::string& title, const std::string& message, int maximum, bool verbose) : ProgressInfo(title, message, maximum, verbose), verbosity(verbose) { if (verbosity) { std::cout << title << std::endl; std::cout << message << std::endl; } } bool stfio::StdoutProgressInfo::Update(int value, const std::string& newmsg, bool* skip) { if (verbosity) { std::cout << "\r"; std::cout.width(3); std::cout << value << "% " << newmsg << std::flush; } return true; } #ifndef TEST_MINIMAL stfio::filetype stfio::findType(const std::string& ext) { if (ext=="*.dat;*.cfs") return stfio::cfs; else if (ext=="*.cfs") return stfio::cfs; else if (ext=="*.abf") return stfio::abf; else if (ext=="*.axgd") return stfio::axg; else if (ext=="*.axgx") return stfio::axg; else if (ext=="*.axgd;*.axgx") return stfio::axg; else if (ext=="*.h5") return stfio::hdf5; else if (ext=="*.atf") return stfio::atf; else if (ext=="*.dat") return stfio::heka; else if (ext=="*.smr") return stfio::son; #if (defined(WITH_BIOSIG) || defined(WITH_BIOSIG2)) else if (ext=="*.dat;*.cfs;*.gdf;*.ibw") return stfio::biosig; else if (ext=="*.*") return stfio::biosig; #endif else return stfio::none; } #endif // TEST_MINIMAL bool stfio::importFile( const std::string& fName, stfio::filetype type, Recording& ReturnData, const stfio::txtImportSettings& txtImport, ProgressInfo& progDlg ) { try { #if (defined(WITH_BIOSIG) || defined(WITH_BIOSIG2)) // make use of automated file type identification try { stfio::filetype type1 = stfio::importBiosigFile(fName, ReturnData, progDlg); switch (type1) { case stfio::biosig: return true; // succeeded case stfio::none: break; // do nothing, use input argument for deciding on type default: type = type1; // filetype is recognized and should be used below } } catch (...) { // this should never occur, importBiosigFile should always return without exception std::cout << "importBiosigFile failed with an exception - this is a bug"; } #endif switch (type) { case stfio::hdf5: { stfio::importHDF5File(fName, ReturnData, progDlg); break; } case stfio::abf: { stfio::importABFFile(fName, ReturnData, progDlg); break; } case stfio::atf: { stfio::importATFFile(fName, ReturnData, progDlg); break; } case stfio::axg: { stfio::importAXGFile(fName, ReturnData, progDlg); break; } #ifndef TEST_MINIMAL case stfio::cfs: { { int res = stfio::importCFSFile(fName, ReturnData, progDlg); if (res==-7) { stfio::importHEKAFile(fName, ReturnData, progDlg); } break; } } case stfio::heka: { { try { stfio::importHEKAFile(fName, ReturnData, progDlg); } catch (const std::runtime_error& e) { stfio::importCFSFile(fName, ReturnData, progDlg); } break; } } #endif // TEST_MINIMAL default: throw std::runtime_error("Unknown or unsupported file type"); } #if 0 case stfio::son: { stfio::SON::importSONFile(fName,ReturnData); break; } case stfio::ascii: { stfio::importASCIIFile( fName, txtImport.hLines, txtImport.ncolumns, txtImport.firstIsTime, txtImport.toSection, ReturnData ); if (!txtImport.firstIsTime) { ReturnData.SetXScale(1.0/txtImport.sr); } if (ReturnData.size()>0) ReturnData[0].SetYUnits(txtImport.yUnits); if (ReturnData.size()>1) ReturnData[1].SetYUnits(txtImport.yUnitsCh2); ReturnData.SetXUnits(txtImport.xUnits); break; } #endif } catch (...) { throw; } return true; } bool stfio::exportFile(const std::string& fName, stfio::filetype type, const Recording& Data, ProgressInfo& progDlg) { try { switch (type) { case stfio::atf: { stfio::exportATFFile(fName, Data); break; } #if (defined(WITH_BIOSIG) || defined(WITH_BIOSIG2)) case stfio::biosig: { stfio::exportBiosigFile(fName, Data, progDlg); break; } #endif case stfio::cfs: { stfio::exportCFSFile(fName, Data, progDlg); break; } case stfio::hdf5: { stfio::exportHDF5File(fName, Data, progDlg); break; } case stfio::igor: { stfio::exportIGORFile(fName, Data, progDlg); break; } default: throw std::runtime_error("Trying to write an unsupported dataformat."); } } catch (...) { throw; } return true; } Vector_double stfio::vec_scal_plus(const Vector_double& vec, double scalar) { Vector_double ret_vec(vec.size(), scalar); std::transform(vec.begin(), vec.end(), ret_vec.begin(), ret_vec.begin(), std::plus()); return ret_vec; } Vector_double stfio::vec_scal_minus(const Vector_double& vec, double scalar) { Vector_double ret_vec(vec.size(), scalar); std::transform(vec.begin(), vec.end(), ret_vec.begin(), ret_vec.begin(), std::minus()); return ret_vec; } Vector_double stfio::vec_scal_mul(const Vector_double& vec, double scalar) { Vector_double ret_vec(vec.size(), scalar); std::transform(vec.begin(), vec.end(), ret_vec.begin(), ret_vec.begin(), std::multiplies()); return ret_vec; } Vector_double stfio::vec_scal_div(const Vector_double& vec, double scalar) { Vector_double ret_vec(vec.size(), scalar); std::transform(vec.begin(), vec.end(), ret_vec.begin(), ret_vec.begin(), std::divides()); return ret_vec; } Vector_double stfio::vec_vec_plus(const Vector_double& vec1, const Vector_double& vec2) { Vector_double ret_vec(vec1.size()); std::transform(vec1.begin(), vec1.end(), vec2.begin(), ret_vec.begin(), std::plus()); return ret_vec; } Vector_double stfio::vec_vec_minus(const Vector_double& vec1, const Vector_double& vec2) { Vector_double ret_vec(vec1.size()); std::transform(vec1.begin(), vec1.end(), vec2.begin(), ret_vec.begin(), std::minus()); return ret_vec; } Vector_double stfio::vec_vec_mul(const Vector_double& vec1, const Vector_double& vec2) { Vector_double ret_vec(vec1.size()); std::transform(vec1.begin(), vec1.end(), vec2.begin(), ret_vec.begin(), std::multiplies()); return ret_vec; } Vector_double stfio::vec_vec_div(const Vector_double& vec1, const Vector_double& vec2) { Vector_double ret_vec(vec1.size()); std::transform(vec1.begin(), vec1.end(), vec2.begin(), ret_vec.begin(), std::divides()); return ret_vec; } Recording stfio::concatenate(const Recording& src, const std::vector& sections, ProgressInfo& progDlg) { size_t nc, NC = src.size(); Recording Concatenated(NC, 1); for (nc = 0; nc < NC; nc++) { int new_size=0; for (c_st_it cit = sections.begin(); cit != sections.end(); cit++) { new_size += (int)src[nc][*cit].size(); } Section TempSection(new_size); std::size_t n_new=0; std::size_t n_s=0; for (c_st_it cit = sections.begin(); cit != sections.end(); cit++) { std::ostringstream progStr; progStr << "Adding section #" << (int)n_s+1 << " of " << (int)sections.size(); progDlg.Update( (int)((double)n_s/(double)sections.size()*100.0), progStr.str() ); if (cit == sections.begin()) { TempSection.SetXScale(src[nc][*cit].GetXScale()); } else if (TempSection.GetXScale() != src[nc][*cit].GetXScale()) { Concatenated.resize(0); throw std::runtime_error("can not concatanate because sampling frequency differs"); } std::size_t secSize=src[nc][*cit].size(); if (n_new+secSize>TempSection.size()) { Concatenated.resize(0); throw std::runtime_error("memory allocation error"); } std::copy(src[nc][*cit].get().begin(), src[nc][*cit].get().end(), &TempSection[n_new]); n_new += secSize; n_s++; } TempSection.SetSectionDescription(src[nc][0].GetSectionDescription() + ", concatenated"); Channel TempChannel(TempSection); TempChannel.SetChannelName(src[nc].GetChannelName()); TempChannel.SetYUnits(src[nc].GetYUnits()); Concatenated.InsertChannel(TempChannel, nc); } // Recording Concatenated(TempChannel); Concatenated.CopyAttributes(src); return Concatenated; } Recording stfio::multiply(const Recording& src, const std::vector& sections, std::size_t channel, double factor) { Channel TempChannel(sections.size(), src[channel][sections[0]].size()); std::size_t n = 0; for (c_st_it cit = sections.begin(); cit != sections.end(); cit++) { // Multiply the valarray in Data: Section TempSection(stfio::vec_scal_mul(src[channel][*cit].get(),factor)); TempSection.SetXScale(src[channel][*cit].GetXScale()); TempSection.SetSectionDescription( src[channel][*cit].GetSectionDescription()+ ", multiplied" ); try { TempChannel.InsertSection(TempSection, n); } catch (const std::out_of_range e) { throw e; } n++; } if (TempChannel.size()>0) { Recording Multiplied(TempChannel); Multiplied.CopyAttributes(src); Multiplied[0].SetYUnits( src.at( channel ).GetYUnits() ); return Multiplied; } else { throw std::runtime_error("Channel empty in stfio::multiply"); } } stimfit-0.13.13/src/libstfio/Makefile.am0000664000175000017500000000326412275677732014746 00000000000000if BUILD_MODULE if ISDARWIN PYTHON_TARGET_DIR=${PYTHON_DIST_PKG} else PYTHON_TARGET_DIR=${PYTHON_PRE_DIST_PKG} # PYTHON_TARGET_DIR=${PYTHON_DIST_PKG} endif PYTHON_DEST_DIR=${DESTDIR}${PYTHON_TARGET_DIR} pkglibdir = ${PYTHON_TARGET_DIR}/stfio endif pkglib_LTLIBRARIES = libstfio.la libstfio_la_SOURCES = ./channel.cpp ./section.cpp ./recording.cpp ./stfio.cpp \ ./cfs/cfslib.cpp ./cfs/cfs.c \ ./hdf5/hdf5lib.cpp \ ./abf/abflib.cpp \ ./abf/axon/AxAbfFio32/abffiles.cpp \ ./abf/axon/AxAbfFio32/csynch.cpp \ ./abf/axon/AxAbfFio32/filedesc.cpp \ ./abf/axon/Common/FileReadCache.cpp \ ./abf/axon/Common/FileIO.cpp \ ./abf/axon/AxAbfFio32/abfheadr.cpp \ ./abf/axon/AxAbfFio32/abfhwave.cpp \ ./abf/axon/AxAbfFio32/Oldheadr.cpp \ ./abf/axon/AxAbfFio32/abfutil.cpp \ ./abf/axon/AxAbfFio32/msbincvt.cpp \ ./abf/axon/Common/unix.cpp \ ./abf/axon/AxAbfFio32/abferror.cpp \ ./abf/axon/AxAtfFio32/axatffio32.cpp \ ./abf/axon/AxAtfFio32/fileio2.cpp \ ./abf/axon2/ProtocolReaderABF2.cpp \ ./abf/axon2/SimpleStringCache.cpp \ ./abf/axon2/abf2headr.cpp \ ./atf/atflib.cpp \ ./axg/axglib.cpp \ ./axg/AxoGraph_ReadWrite.cpp \ ./axg/fileUtils.cpp \ ./axg/stringUtils.cpp \ ./axg/byteswap.cpp \ ./heka/hekalib.cpp \ ./igor/igorlib.cpp \ ./igor/CrossPlatformFileIO.c \ ./igor/WriteWave.c if WITH_BIOSIG2 libstfio_la_SOURCES += ./biosig/biosiglib.cpp else if WITH_BIOSIG libstfio_la_SOURCES += ./biosig/biosiglib.cpp endif endif libstfio_la_LDFLAGS = libstfio_la_LIBADD = $(LIBSTF_LDFLAGS) $(LIBHDF5_LDFLAGS) $(LIBBIOSIG_LDFLAGS) if ISDARWIN # don't install anything because it has to go into the app bundle if !BUILD_MODULE install: endif endif #. /ascii/asciilib.cpp stimfit-0.13.13/src/libstfio/section.h0000775000175000017500000001215212275677732014526 00000000000000// This program is free software; you can redistribute it and/or // modify it under the terms of the GNU General Public License // as published by the Free Software Foundation; either version 2 // of the License, or (at your option) any later version. // This program is distributed in the hope that it will be useful, // but WITHOUT ANY WARRANTY; without even the implied warranty of // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the // GNU General Public License for more details. // You should have received a copy of the GNU General Public License // along with this program; if not, write to the Free Software // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA. /*! \file section.h * \author Christoph Schmidt-Hieber * \date 2008-01-16 * \brief Declares the Section class. */ /*------------------------------------------------------------------------ * References: * [1] Stroustrup, B.: The C++ Programming Language. 3rd ed. 1997 * [2] Meyers, S.: Effective C++. 3rd ed. 2005 --------------------------------------------------------------------------*/ // only compile once, even if included more often: #ifndef _SECTION_H #define _SECTION_H /*! \addtogroup stfgen * @{ */ //! Represents a continuously sampled sweep of data points class StfioDll Section { public: // Construction/Destruction----------------------------------------------- //! Default constructor. explicit Section(); //! Constructor /*! \param valA A vector of values that will make up the section. * \param label An optional section label string. */ explicit Section( const Vector_double& valA, const std::string& label="\0" ); //! Yet another constructor /*! \param size Number of data points. * \param label An optional section label string. */ explicit Section( std::size_t size, const std::string& label="\0" ); //! Destructor ~Section(); // Operators-------------------------------------------------------------- //! Unchecked access. Returns a non-const reference. /*! \param at Data point index. * \return Copy of the data point with index at. */ double& operator[](std::size_t at) { return data[at]; } //! Unchecked access. Returns a copy. /*! \param at Data point index. * \return Reference to the data point with index at. */ double operator[](std::size_t at) const { return data[at]; } // Public member functions------------------------------------------------ //! Range-checked access. Returns a copy. /*! Throws std::out_of_range if out of range. * \param at_ Data point index. * \return Copy of the data point at index at_ */ double at(std::size_t at_) const; //! Range-checked access. Returns a non-const reference. /*! Throws std::out_of_range if out of range. * \param at_ Data point index. * \return Reference to the data point at index at_ */ double& at(std::size_t at_); //! Low-level access to the valarray (read-only). /*! An explicit function is used instead of implicit type conversion * to access the valarray. * \return The valarray containing the data points. */ const Vector_double& get() const { return data; } //! Low-level access to the valarray (read and write). /*! An explicit function is used instead of implicit type conversion * to access the valarray. * \return The valarray containing the data points. */ Vector_double& get_w() { return data; } //! Resize the Section to a new number of data points; deletes all previously stored data when gcc is used. /*! Note that in the gcc implementation of std::vector, resizing will * delete all the original data. This is different from std::vector::resize(). * \param new_size The new number of data points. */ void resize(std::size_t new_size) { data.resize(new_size); } //! Retrieve the number of data points. /*! \return The number of data points. */ size_t size() const { return data.size(); } //! Sets the x scaling. /*! \param value The x scaling. */ void SetXScale(double value); //! Retrieves the x scaling. /*! \return The x scaling. */ double GetXScale() const { return x_scale; } //! Retrieves a section description. /*! \return A string describing this section. */ const std::string& GetSectionDescription() const { return section_description; } //! 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MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the // GNU General Public License for more details. // You should have received a copy of the GNU General Public License // along with this program; if not, write to the Free Software // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA. /*! \file channel.h * \author Christoph Schmidt-Hieber * \date 2008-01-16 * \brief Declares the Channel class. */ #ifndef _CHANNEL_H #define _CHANNEL_H /*! \addtogroup stfgen * @{ */ class Section; //! A Channel contains several data \link #Section Sections \endlink representing observations of the same physical quantity. class StfioDll Channel { public: //ctor/dtor--------------------------------------------------- //! Default constructor explicit Channel(void); //! Constructor /*! \param c_Section A single section from which to construct the channel */ explicit Channel(const Section& c_Section); //! Constructor /*! \param SectionList A vector of Sections from which to construct the channel */ explicit Channel(const std::vector

& SectionList); //! Constructor /*! Setting the number of sections at construction time will avoid unnecessary * memory re-allocations. * \param c_n_sections The number of sections. * \param section_size Initial section size. Will serve additional * re-alocations if known at construction time. */ explicit Channel(std::size_t c_n_sections, std::size_t section_size = 0); //! Destructor ~Channel(); //operators--------------------------------------------------- //! Unchecked access to a section (read and write) /*! Use at() for range-checked access. * \param at_ The section index. * \return The section at index at_. */ Section& operator[](std::size_t at_) { return SectionArray[at_]; } //! Unchecked access to a section (read-only) /*! Use at() for range-checked access. * \param at_ The section index. * \return The section at index at_. */ const Section& operator[](std::size_t at_) const { return SectionArray[at_]; } //member access: read----------------------------------------- //! Retrieves the channel name /*! \return The channel name. */ const std::string& GetChannelName() const { return name; } //! Retrieves the y units string. /*! \return The y units string. */ const std::string& GetYUnits( ) const { return yunits; } //! Retrieves the size of the section array. /*! \return The size of the section array. */ size_t size() const { return SectionArray.size(); } //! Range-checked access to a section (read-only). /*! Will throw std::out_of_range if out of range. * \param at_ The index of the section. * \return The section at index at_. */ const Section& at(std::size_t at_) const; //! Range-checked access to a section (read and write). /*! Will throw std::out_of_range if out of range. * \param at_ The index of the section. * \return The section at index at_. */ Section& at(std::size_t at_); //! Low-level access to the section array (read-only). /*! \return The vector containing the sections. */ const std::vector< Section >& get() const { return SectionArray; } //! Low-level access to the section array (read and write). /*! \return The vector containing the sections. */ std::vector< Section >& get() { return SectionArray; } //member access: write---------------------------------------- //! Sets the channel name /*! \param value The channel name. */ void SetChannelName(const std::string& value) { name = value; } //! Sets the y units string /*! \param value The new y units string. */ void SetYUnits( const std::string& value ) { yunits = value; } //misc-------------------------------------------------------- //! Inserts a section at the given position, overwriting anything that's currently stored at that position /*! Meant to be used after constructing with Channel(const unsigned int& c_n_sections}. * The section array size has to be larger than pos because it won't be resized. * Will throw std::out_of_range if out of range. * \param c_Section The section to be inserted. * \param pos The position at which to insert the section. */ void InsertSection(const Section& c_Section, std::size_t pos); //! Resize the section array. /*! \param newSize The new number of sections. */ void resize(std::size_t newSize); //! Reserve memory for a number of sections. /*! This will avoid unnecessary memory re-allocations. * \param resSize The number of sections to reserve memory for. */ void reserve(std::size_t resSize); private: //private members--------------------------------------------- std::string name, yunits; // An array of sections std::vector< Section > SectionArray; }; /*@}*/ #endif stimfit-0.13.13/src/libstfio/stfio.h0000664000175000017500000002050712275677732014206 00000000000000// This program is free software; you can redistribute it and/or // modify it under the terms of the GNU General Public License // as published by the Free Software Foundation; either version 2 // of the License, or (at your option) any later version. // This program is distributed in the hope that it will be useful, // but WITHOUT ANY WARRANTY; without even the implied warranty of // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the // GNU General Public License for more details. // You should have received a copy of the GNU General Public License // along with this program; if not, write to the Free Software // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA. /*! \file stfio.h * \author Christoph Schmidt-Hieber * \date 2011-09-25 * \brief header file for libstfio * * * Header file for libstfio */ #ifndef _STFIO_H_ #define _STFIO_H_ #include #include #include #include #include #include #include #ifdef _MSC_VER #pragma warning( disable : 4251 ) // Disable warning messages #pragma warning( disable : 4996 ) // Disable warning messages #endif //! Defines dll export or import functions for Windows #if defined(_WINDOWS) && !defined(__MINGW32__) #ifdef STFIODLL #define StfioDll __declspec( dllexport ) #else #define StfioDll __declspec( dllimport ) #endif #else #define StfioDll #endif typedef std::vector Vector_double; typedef std::vector Vector_float; #ifdef _MSC_VER #ifndef NAN static const unsigned long __nan[2] = {0xffffffff, 0x7fffffff}; #define NAN (*(const float *) __nan) #endif #ifndef INFINITY #define INFINITY (DBL_MAX+DBL_MAX) #endif StfioDll long int lround(double x); #define snprintf _snprintf #endif #include "./recording.h" #include "./channel.h" #include "./section.h" /* class Recording; */ /* class Channel; */ /* class Section; */ //! The stfio namespace. /*! All essential core functions and classes are in this namespace. * Its purpose is to reduce name mangling problems. */ namespace stfio { /*! \addtogroup stfio * @{ */ StfioDll Vector_double vec_scal_plus(const Vector_double& vec, double scalar); StfioDll Vector_double vec_scal_minus(const Vector_double& vec, double scalar); StfioDll Vector_double vec_scal_mul(const Vector_double& vec, double scalar); StfioDll Vector_double vec_scal_div(const Vector_double& vec, double scalar); StfioDll Vector_double vec_vec_plus(const Vector_double& vec1, const Vector_double& vec2); StfioDll Vector_double vec_vec_minus(const Vector_double& vec1, const Vector_double& vec2); StfioDll Vector_double vec_vec_mul(const Vector_double& vec1, const Vector_double& vec2); StfioDll Vector_double vec_vec_div(const Vector_double& vec1, const Vector_double& vec2); //! ProgressInfo class /*! Abstract class to be used as an interface for the file io read/write functions * Can be a GUI Dialog or stdout messages */ class StfioDll ProgressInfo { public: //! Constructor /*! \param title Dialog title * \param message Message displayed * \param maximum Maximum value for the progress meter * \param verbose Whether or not to emit a lot of noise */ ProgressInfo(const std::string& title, const std::string& message, int maximum, bool verbose) {}; //! Updates the progress info /*! \param value New value of the progress meter * \param newmsg New message for the info text * \param skip This is set to true if the user has chosen to skip the operation * \return True unless the operation was cancelled. */ virtual bool Update(int value, const std::string& newmsg="", bool* skip=NULL) = 0; }; //! StdoutProgressInfo class /*! Example of a ProgressInfo that prints to stdout */ class StfioDll StdoutProgressInfo : public stfio::ProgressInfo { public: StdoutProgressInfo(const std::string& title, const std::string& message, int maximum, bool verbose); bool Update(int value, const std::string& newmsg="", bool* skip=NULL); private: bool verbosity; }; //! Text file import filter settings struct txtImportSettings { txtImportSettings() : hLines(1),toSection(true),firstIsTime(true),ncolumns(2), sr(20),yUnits("mV"),yUnitsCh2("pA"),xUnits("ms") {} int hLines; /*!< Number of header lines. */ bool toSection; /*!< Import columns into separate sections rather than separate channels. */ bool firstIsTime; /*!< First column contains time. */ int ncolumns; /*!< Number of columns. */ double sr; /*!< Sampling rate. */ std::string yUnits; /*!< y units string. */ std::string yUnitsCh2; /*!< y units string of second channel. */ std::string xUnits; /*!< x units string. */ }; //! File types enum filetype { atf, /*!< Axon text file. */ abf, /*!< Axon binary file. */ axg, /*!< Axograph binary file. */ ascii, /*!< Generic text file. */ cfs, /*!< CED filing system. */ igor, /*!< Igor binary wave. */ son, /*!< CED Son files. */ hdf5, /*!< hdf5 files. */ heka, /*!< heka files. */ biosig, /*!< biosig files. */ none /*!< Undefined file type. */ }; //! Attempts to determine the filetype from the filter extension. /*! \param ext The filter extension to be tested (in the form wxT("*.ext")). * \return The corresponding file type. */ StfioDll stfio::filetype findType(const std::string& ext); //! Generic file import. /*! \param fName The full path name of the file. * \param type The file type. * \param ReturnData Will contain the file data on return. * \param txtImport The text import filter settings. * \param ProgressInfo Progress indicator * \return true if the file has successfully been read, false otherwise. */ StfioDll bool importFile( const std::string& fName, stfio::filetype type, Recording& ReturnData, const stfio::txtImportSettings& txtImport, stfio::ProgressInfo& progDlg ); //! Generic file export. /*! \param fName The full path name of the file. * \param type The file type. * \param Data Data to be written * \param ProgressInfo Progress indicator * \return true if the file has successfully been written, false otherwise. */ StfioDll bool exportFile(const std::string& fName, stfio::filetype type, const Recording& Data, ProgressInfo& progDlg); //! Produce new recording with concatenated sections /*! \param src Source recording * \param sections Indices of selected sections * \param ProgressInfo Progress indicator * \return New recording with concatenated selected sections */ StfioDll Recording concatenate(const Recording& src, const std::vector& sections, ProgressInfo& progDlg); //! Produce new recording with multiplied sections /*! \param src Source recording * \param sections Indices of selected sections * \param channel Channel index * \param factor Multiplication factor * \return New recording with multiplied selected sections */ StfioDll Recording multiply(const Recording& src, const std::vector& sections, std::size_t channel, double factor); /*@}*/ } // end of namespace typedef std::vector< std::string >::iterator sst_it; /*!< std::string iterator */ typedef std::vector< std::string >::const_iterator c_sst_it; /*!< constant std::string iterator */ typedef std::vector< std::size_t >::const_iterator c_st_it; /*!< constant size_t iterator */ typedef std::vector< int >::iterator int_it; /*!< int iterator */ typedef std::vector< int >::const_iterator c_int_it; /*!< constant int iterator */ typedef std::vector< Channel >::iterator ch_it; /*!< Channel iterator */ typedef std::vector< Channel >::const_iterator c_ch_it; /*!< constant Channel iterator */ typedef std::vector< Section >::iterator sec_it; /*!< Section iterator */ typedef std::vector< Section >::const_iterator c_sec_it; /*!< constant Section iterator */ #endif stimfit-0.13.13/src/libstfio/atf/0000775000175000017500000000000012275713011013514 500000000000000stimfit-0.13.13/src/libstfio/atf/atflib.h0000775000175000017500000000317212275677732015077 00000000000000// This program is free software; you can redistribute it and/or // modify it under the terms of the GNU General Public License // as published by the Free Software Foundation; either version 2 // of the License, or (at your option) any later version. // This program is distributed in the hope that it will be useful, // but WITHOUT ANY WARRANTY; without even the implied warranty of // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the // GNU General Public License for more details. // You should have received a copy of the GNU General Public License // along with this program; if not, write to the Free Software // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA. /*! \file atflib.h * \author Christoph Schmidt-Hieber * \date 2008-01-23 * \brief Import and export Axon text files. */ #ifndef _ATFLIB_H #define _ATFLIB_H #include "./../stfio.h" #include "./../abf/axon/AxAtfFio32/axatffio32.h" class Recording; namespace stfio { //! Open an ATF file and store its contents to a Recording object. /*! \param fName Full path to the file to be read. * \param ReturnData On entry, an empty Recording object. On exit, * the data stored in \e fName. * \param progress True if the progress dialog should be updated. */ void importATFFile(const std::string& fName, Recording& ReturnData, ProgressInfo& progDlg); //! Export a Recording to an ATF file. /*! \param fName Full path to the file to be written. * \param WData The data to be exported. */ StfioDll bool exportATFFile(const std::string& fName, const Recording& WData); } #endif stimfit-0.13.13/src/libstfio/atf/atflib.cpp0000775000175000017500000002160012275677732015426 00000000000000// This program is free software; you can redistribute it and/or // modify it under the terms of the GNU General Public License // as published by the Free Software Foundation; either version 2 // of the License, or (at your option) any later version. // This program is distributed in the hope that it will be useful, // but WITHOUT ANY WARRANTY; without even the implied warranty of // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the // GNU General Public License for more details. // You should have received a copy of the GNU General Public License // along with this program; if not, write to the Free Software // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA. #include #include #include "./atflib.h" #include "../recording.h" namespace stfio { std::string ATFError(const std::string& fName, int nError); } std::string stfio::ATFError(const std::string& fName, int nError) { int nMaxLen=320; std::vector errorMsg(nMaxLen); ATF_BuildErrorText(nError, fName.c_str(),&errorMsg[0], nMaxLen ); return std::string( &errorMsg[0] ); } bool stfio::exportATFFile(const std::string& fName, const Recording& WData) { int nColumns=1+(int)WData[0].size() /*time + number of sections*/, nFileNum; int nError; if (!ATF_OpenFile(fName.c_str(),ATF_WRITEONLY,&nColumns,&nFileNum,&nError)) { std::string errorMsg("Exception while calling ATF_OpenFile():\n"); errorMsg += ATFError(fName,nError); throw std::runtime_error(errorMsg); } // Write sections to columns: // First column is time: for (int n_c=0;n_c max_size) { max_size=WData[0][n_s].size(); } } for (int n_l=0;n_l < (int)max_size; ++n_l) { for (int n_c=0;n_c titleVec(nMaxText); if (!ATF_GetColumnTitle(nFileNum,0,&titleVec[0],nMaxText,&nError)) { std::string errorMsg("Exception while calling ATF_GetColumnTitle():\n"); errorMsg+=ATFError(fName,nError); throw std::runtime_error(errorMsg); } std::string titleString(titleVec.begin(),titleVec.end()); int timeInFirstColumn=0; if (titleString.find("time")!=std::string::npos || titleString.find("Time")!=std::string::npos || titleString.find("TIME")!=std::string::npos) { // Read sampling information from first two time values: double time[2]; for (int n_l=0;n_l<2;++n_l) { if (!ATF_ReadDataColumn(nFileNum,0,&time[n_l],&nError)) { std::string errorMsg("Exception while calling ATF_ReadDataColumn():\n"); errorMsg+=ATFError(fName,nError); throw std::runtime_error(errorMsg); } } if (!ATF_RewindFile(nFileNum,&nError)) { std::string errorMsg("Exception while calling ATF_RewindFile():\n"); errorMsg+=ATFError(fName,nError); throw std::runtime_error(errorMsg); } ReturnData.SetXScale(time[1]-time[0]); timeInFirstColumn=1; } ReturnData.resize(1); Channel TempChannel(nColumns-timeInFirstColumn); for (int n_c=timeInFirstColumn;n_c unitsVec(nMaxText); if (!ATF_GetColumnUnits(nFileNum,n_c,&unitsVec[0],nMaxText,&nError)) { std::string errorMsg("Exception while calling ATF_GetColumnUnits():\n"); errorMsg+=ATFError(fName,nError); ReturnData.resize(0); throw std::runtime_error(errorMsg); } ReturnData[0].SetYUnits(std::string(&unitsVec[0])); } try { TempChannel.InsertSection(TempSection,n_c-timeInFirstColumn); } catch (...) { throw; } // Rewind file before reading next column: if (!ATF_RewindFile(nFileNum,&nError)) { std::string errorMsg("Exception while calling ATF_RewindFile():\n"); errorMsg+=ATFError(fName,nError); ReturnData.resize(0); throw std::runtime_error(errorMsg); } } try { ReturnData.InsertChannel(TempChannel,0); } catch (...) { ReturnData.resize(0); throw; } if (!ATF_CloseFile(nFileNum)) { std::string errorMsg("Exception while calling ATF_CloseFile():\n"); errorMsg += "Error while closing ATF file"; throw std::runtime_error(errorMsg); } } stimfit-0.13.13/src/libstfio/channel.cpp0000775000175000017500000000420212275677732015022 00000000000000// This program is free software; you can redistribute it and/or // modify it under the terms of the GNU General Public License // as published by the Free Software Foundation; either version 2 // of the License, or (at your option) any later version. // This program is distributed in the hope that it will be useful, // but WITHOUT ANY WARRANTY; without even the implied warranty of // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the // GNU General Public License for more details. // You should have received a copy of the GNU General Public License // along with this program; if not, write to the Free Software // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA. #include "./stfio.h" #include "./channel.h" Channel::Channel(void) : name("\0"), yunits( "\0" ), SectionArray(0) {} Channel::Channel(const Section& c_Section) : name("\0"), yunits( "\0" ), SectionArray(1, c_Section) {} Channel::Channel(const std::vector
& SectionList) : name("\0"), yunits( "\0" ), SectionArray(SectionList) {} Channel::Channel(std::size_t c_n_sections, std::size_t section_size) : name("\0"), yunits( "\0" ), SectionArray(c_n_sections, Section(section_size)) {} Channel::~Channel(void) {} void Channel::InsertSection(const Section& c_Section, std::size_t pos) { try { if (SectionArray.at(pos).size() != c_Section.size()) { SectionArray.at(pos).resize(c_Section.size()); } SectionArray.at(pos) = c_Section; } catch (...) { throw; } } const Section& Channel::at(std::size_t at_) const { try { return SectionArray.at(at_); } catch (...) { // Forward all exceptions, can't deal with them here: throw; } } Section& Channel::at(std::size_t at_) { try { return SectionArray.at(at_); } catch (...) { // Forward all exceptions, can't deal with them here: throw; } } void Channel::resize(std::size_t newSize) { SectionArray.resize(newSize); } void Channel::reserve(std::size_t resSize) { SectionArray.reserve(resSize); } stimfit-0.13.13/src/libstfio/hdf5/0000775000175000017500000000000012275713011013570 500000000000000stimfit-0.13.13/src/libstfio/hdf5/hdf5lib.cpp0000775000175000017500000005230512275677732015564 00000000000000// This program is free software; you can redistribute it and/or // modify it under the terms of the GNU General Public License // as published by the Free Software Foundation; either version 2 // of the License, or (at your option) any later version. // This program is distributed in the hope that it will be useful, // but WITHOUT ANY WARRANTY; without even the implied warranty of // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the // GNU General Public License for more details. // You should have received a copy of the GNU General Public License // along with this program; if not, write to the Free Software // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA. #include "hdf5.h" #if H5_VERS_MINOR > 6 #include "hdf5_hl.h" #else #include "H5TA.h" #endif #include #include #include #include "./hdf5lib.h" #include "../recording.h" const static unsigned int DATELEN = 128; const static unsigned int TIMELEN = 128; const static unsigned int UNITLEN = 16; typedef struct rt { int channels; char date[DATELEN]; char time[TIMELEN]; } rt; typedef struct ct { int n_sections; } ct; typedef struct st { double dt; char xunits[UNITLEN]; char yunits[UNITLEN]; } st; bool stfio::exportHDF5File(const std::string& fName, const Recording& WData, ProgressInfo& progDlg) { hid_t file_id = H5Fcreate(fName.c_str(), H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); const int NRECORDS = 1; const int NFIELDS = 3; /* Calculate the size and the offsets of our struct members in memory */ size_t rt_offset[NFIELDS] = { HOFFSET( rt, channels ), HOFFSET( rt, date ), HOFFSET( rt, time )}; /* Define an array of root tables */ rt p_data; p_data.channels = WData.size(); struct tm t = WData.GetDateTime(); std::size_t date_length = snprintf(p_data.date, DATELEN, "%04i-%02i-%02i", t.tm_year+1900, t.tm_mon+1, t.tm_mday); std::size_t time_length = snprintf(p_data.time, TIMELEN, "%02i:%02i:%02i", t.tm_hour, t.tm_min, t.tm_sec); // ensure that an undefine string is set to "\0", and that the terminating \0 is counted in string length p_data.date[date_length++] = 0; p_data.time[time_length++] = 0; /* Define field information */ const char *field_names[NFIELDS] = { "channels", "date", "time" }; hid_t field_type[NFIELDS]; /* Initialize the field field_type */ hid_t string_type1 = H5Tcopy( H5T_C_S1 ); hid_t string_type2 = H5Tcopy( H5T_C_S1 ); H5Tset_size( string_type1, date_length); H5Tset_size( string_type2, time_length); field_type[0] = H5T_NATIVE_INT; field_type[1] = string_type1; field_type[2] = string_type2; std::ostringstream desc; desc << "Description of " << fName; herr_t status = H5TBmake_table( desc.str().c_str(), file_id, "description", (hsize_t)NFIELDS, (hsize_t)NRECORDS, sizeof(rt), field_names, rt_offset, field_type, 10, NULL, 0, &p_data ); if (status < 0) { std::string errorMsg("Exception while writing description in stfio::exportHDF5File"); H5Fclose(file_id); H5close(); throw std::runtime_error(errorMsg); } hid_t comment_group = H5Gcreate2( file_id,"/comment", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); /* File comment. */ std::string description(WData.GetFileDescription()); if (description.length() <= 0) { description = "No description"; } status = H5LTmake_dataset_string(file_id, "/comment/description", description.c_str()); if (status < 0) { std::string errorMsg("Exception while writing description in stfio::exportHDF5File"); H5Fclose(file_id); H5close(); throw std::runtime_error(errorMsg); } std::string comment(WData.GetComment()); if (comment.length() <= 0) { comment = "No comment"; } status = H5LTmake_dataset_string(file_id, "/comment/comment", comment.c_str()); if (status < 0) { std::string errorMsg("Exception while writing comment in stfio::exportHDF5File"); H5Fclose(file_id); H5close(); throw std::runtime_error(errorMsg); } H5Gclose(comment_group); std::vector channel_name(WData.size()); hid_t channels_group = H5Gcreate2( file_id,"/channels", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); for ( std::size_t n_c=0; n_c < WData.size(); ++n_c) { /* Channel descriptions. */ std::ostringstream ossname; ossname << WData[n_c].GetChannelName(); if ( ossname.str() == "" ) { ossname << "ch" << (n_c); } channel_name[n_c] = ossname.str(); hsize_t dimsc[1] = { 1 }; hid_t string_typec = H5Tcopy( H5T_C_S1 ); std::size_t cn_length = channel_name[n_c].length(); if (cn_length <= 0) cn_length = 1; H5Tset_size( string_typec, cn_length ); std::vector datac(channel_name[n_c].length()); std::copy(channel_name[n_c].begin(),channel_name[n_c].end(), datac.begin()); std::ostringstream desc_path; desc_path << "/channels/ch" << (n_c); status = H5LTmake_dataset(file_id, desc_path.str().c_str(), 1, dimsc, string_typec, &datac[0]); if (status < 0) { std::string errorMsg("Exception while writing channel name in stfio::exportHDF5File"); H5Fclose(file_id); H5close(); throw std::runtime_error(errorMsg); } std::ostringstream channel_path; channel_path << "/" << channel_name[n_c]; hid_t channel_group = H5Gcreate2( file_id, channel_path.str().c_str(), H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); if (channel_group < 0) { std::ostringstream errorMsg; errorMsg << "Exception while creating channel group for " << channel_path.str().c_str(); H5Fclose(file_id); H5close(); throw std::runtime_error(errorMsg.str()); } /* Calculate the size and the offsets of our struct members in memory */ size_t ct_size = sizeof( ct ); size_t ct_offset[1] = { HOFFSET( rt, channels ) }; /* Define an array of channel tables */ ct c_data = { (int)WData[n_c].size() }; /* Define field information */ const char *cfield_names[1] = { "n_sections" }; hid_t cfield_type[1] = {H5T_NATIVE_INT}; std::ostringstream c_desc; c_desc << "Description of channel " << n_c; status = H5TBmake_table( c_desc.str().c_str(), channel_group, "description", (hsize_t)1, (hsize_t)1, ct_size, cfield_names, ct_offset, cfield_type, 10, NULL, 0, &c_data ); if (status < 0) { std::string errorMsg("Exception while writing channel description in stfio::exportHDF5File"); H5Fclose(file_id); H5close(); throw std::runtime_error(errorMsg); } int max_log10 = 0; if (WData[n_c].size() > 1) { max_log10 = int(log10((double)WData[n_c].size()-1.0)); } for (std::size_t n_s=0; n_s < WData[n_c].size(); ++n_s) { int progbar = // Channel contribution: (int)(((double)n_c/(double)WData.size())*100.0+ // Section contribution: (double)(n_s)/(double)WData[n_c].size()*(100.0/WData.size())); std::ostringstream progStr; progStr << "Writing channel #" << n_c + 1 << " of " << WData.size() << ", Section #" << n_s << " of " << WData[n_c].size(); progDlg.Update(progbar, progStr.str()); // construct a number with leading zeros: int n10 = 0; if (n_s > 0) { n10 = int(log10((double)n_s)); } std::ostringstream strZero; strZero << ""; for (int n_z=n10; n_z < max_log10; ++n_z) { strZero << "0"; } // construct a section name: std::ostringstream section_name; section_name << WData[n_c][n_s].GetSectionDescription(); if ( section_name.str() == "" ) { section_name << "sec" << n_s; } // create a child group in the channel: std::ostringstream section_path; section_path << channel_path.str() << "/" << "section_" << strZero.str() << n_s; hid_t section_group = H5Gcreate2( file_id, section_path.str().c_str(), H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); // add data and description, store as 32 bit little endian independent of machine: hsize_t dims[1] = { WData[n_c][n_s].size() }; std::ostringstream data_path; data_path << section_path.str() << "/data"; Vector_float data_cp(WData[n_c][n_s].get().size()); /* 32 bit */ for (std::size_t n_cp = 0; n_cp < WData[n_c][n_s].get().size(); ++n_cp) { data_cp[n_cp] = float(WData[n_c][n_s][n_cp]); } status = H5LTmake_dataset(file_id, data_path.str().c_str(), 1, dims, H5T_IEEE_F32LE, &data_cp[0]); if (status < 0) { std::string errorMsg("Exception while writing data in stfio::exportHDF5File"); H5Fclose(file_id); H5close(); throw std::runtime_error(errorMsg); } const int NSRECORDS = 1; const int NSFIELDS = 3; /* Calculate the size and the offsets of our struct members in memory */ size_t st_size = sizeof( st ); size_t st_offset[NSFIELDS] = { HOFFSET( st, dt ), HOFFSET( st, xunits ), HOFFSET( st, yunits )}; /* Define an array of root tables */ st s_data; s_data.dt = WData.GetXScale(); if (WData.GetXUnits().length() < UNITLEN) strcpy( s_data.xunits, WData.GetXUnits().c_str() ); if (WData[n_c].GetYUnits().length() < UNITLEN) strcpy( s_data.yunits, WData[n_c].GetYUnits().c_str() ); /* Define field information */ const char *sfield_names[NSFIELDS] = { "dt", "xunits", "yunits" }; hid_t sfield_type[NSFIELDS]; /* Initialize the field field_type */ hid_t string_type4 = H5Tcopy( H5T_C_S1 ); hid_t string_type5 = H5Tcopy( H5T_C_S1 ); H5Tset_size( string_type4, 2); std::size_t yu_length = WData[n_c].GetYUnits().length(); if (yu_length <= 0) yu_length = 1; H5Tset_size( string_type5, yu_length ); sfield_type[0] = H5T_NATIVE_DOUBLE; sfield_type[1] = string_type4; sfield_type[2] = string_type5; std::ostringstream sdesc; sdesc << "Description of " << section_name.str(); status = H5TBmake_table( sdesc.str().c_str(), section_group, "description", (hsize_t)NSFIELDS, (hsize_t)NSRECORDS, st_size, sfield_names, st_offset, sfield_type, 10, NULL, 0, &s_data ); if (status < 0) { std::string errorMsg("Exception while writing section description in stfio::exportHDF5File"); H5Fclose(file_id); H5close(); throw std::runtime_error(errorMsg); } H5Gclose(section_group); } H5Gclose(channel_group); } H5Gclose(channels_group); /* Terminate access to the file. */ status = H5Fclose(file_id); if (status < 0) { std::string errorMsg("Exception while closing file in stfio::exportHDF5File"); throw std::runtime_error(errorMsg); } /* Release all hdf5 resources */ status = H5close(); if (status < 0) { std::string errorMsg("Exception while closing file in stfio::exportHDF5File"); throw std::runtime_error(errorMsg); } return (status >= 0); } void stfio::importHDF5File(const std::string& fName, Recording& ReturnData, ProgressInfo& progDlg) { /* Create a new file using default properties. */ hid_t file_id = H5Fopen(fName.c_str(), H5F_ACC_RDONLY, H5P_DEFAULT); /* H5TBread_table const int NRECORDS = 1;*/ const int NFIELDS = 3; /* Calculate the size and the offsets of our struct members in memory */ size_t rt_offset[NFIELDS] = { HOFFSET( rt, channels ), HOFFSET( rt, date ), HOFFSET( rt, time )}; rt rt_buf[1]; size_t rt_sizes[NFIELDS] = { sizeof( rt_buf[0].channels), sizeof( rt_buf[0].date), sizeof( rt_buf[0].time)}; herr_t status=H5TBread_table( file_id, "description", sizeof(rt), rt_offset, rt_sizes, rt_buf ); if (status < 0) { std::string errorMsg("Exception while reading description in stfio::importHDF5File"); throw std::runtime_error(errorMsg); } int numberChannels =rt_buf[0].channels; if ( ReturnData.SetDate(rt_buf[0].date) || ReturnData.SetTime(rt_buf[0].time) ) { std::cout << "Warning HDF5: could not decode date/time " << rt_buf[0].date << " " << rt_buf[0].time << std::endl; } /* Create the data space for the dataset. */ hsize_t dims; H5T_class_t class_id; size_t type_size; std::string description, comment; hid_t group_id = H5Gopen2(file_id, "/comment", H5P_DEFAULT); status = H5Lexists(group_id, "/comment/description", 0); if (status==1) { status = H5LTget_dataset_info( file_id, "/comment/description", &dims, &class_id, &type_size ); if (status >= 0) { description.resize( type_size ); status = H5LTread_dataset_string (file_id, "/comment/description", &description[0]); if (status < 0) { std::string errorMsg("Exception while reading description in stfio::importHDF5File"); throw std::runtime_error(errorMsg); } } } ReturnData.SetFileDescription(description); status = H5Lexists(group_id, "/comment/comment", 0); if (status==1) { status = H5LTget_dataset_info( file_id, "/comment/comment", &dims, &class_id, &type_size ); if (status >= 0) { comment.resize( type_size ); status = H5LTread_dataset_string (file_id, "/comment/comment", &comment[0]); if (status < 0) { std::string errorMsg("Exception while reading comment in stfio::importHDF5File"); throw std::runtime_error(errorMsg); } } } ReturnData.SetComment(comment); double dt = 1.0; std::string yunits = ""; for (int n_c=0;n_c szchannel_name(ctype_size); // szchannel_name.reset( new char[ctype_size] ); status = H5LTread_dataset(file_id, desc_path.str().c_str(), string_typec, &szchannel_name[0] ); if (status < 0) { std::string errorMsg("Exception while reading channel name in stfio::importHDF5File"); throw std::runtime_error(errorMsg); } std::ostringstream channel_name; for (std::size_t c=0; c 1) { max_log10 = int(log10((double)ct_buf[0].n_sections-1.0)); } for (int n_s=0; n_s < ct_buf[0].n_sections; ++n_s) { int progbar = // Channel contribution: (int)(((double)n_c/(double)numberChannels)*100.0+ // Section contribution: (double)(n_s)/(double)ct_buf[0].n_sections*(100.0/numberChannels)); std::ostringstream progStr; progStr << "Reading channel #" << n_c + 1 << " of " << numberChannels << ", Section #" << n_s+1 << " of " << ct_buf[0].n_sections; progDlg.Update(progbar, progStr.str()); // construct a number with leading zeros: int n10 = 0; if (n_s > 0) { n10 = int(log10((double)n_s)); } std::ostringstream strZero; strZero << ""; for (int n_z=n10; n_z < max_log10; ++n_z) { strZero << "0"; } // construct a section name: std::ostringstream section_name; section_name << "sec" << n_s; // create a child group in the channel: std::ostringstream section_path; section_path << channel_path.str() << "/" << "section_" << strZero.str() << n_s; hid_t section_group = H5Gopen2(file_id, section_path.str().c_str(), H5P_DEFAULT ); std::ostringstream data_path; data_path << section_path.str() << "/data"; hsize_t sdims; H5T_class_t sclass_id; size_t stype_size; status = H5LTget_dataset_info( file_id, data_path.str().c_str(), &sdims, &sclass_id, &stype_size ); if (status < 0) { std::string errorMsg("Exception while reading data information in stfio::importHDF5File"); throw std::runtime_error(errorMsg); } Vector_float TempSection(sdims); status = H5LTread_dataset(file_id, data_path.str().c_str(), H5T_IEEE_F32LE, &TempSection[0]); if (status < 0) { std::string errorMsg("Exception while reading data in stfio::importHDF5File"); throw std::runtime_error(errorMsg); } Section TempSectionT(TempSection.size(), section_name.str()); for (std::size_t cp = 0; cp < TempSectionT.size(); ++cp) { TempSectionT[cp] = double(TempSection[cp]); } // std::copy(TempSection.begin(),TempSection.end(),&TempSectionT[0]); try { TempChannel.InsertSection(TempSectionT,n_s); } catch (...) { throw; } /* H5TBread_table const int NSRECORDS = 1; */ const int NSFIELDS = 3; /* Calculate the size and the offsets of our struct members in memory */ size_t st_offset[NSFIELDS] = { HOFFSET( st, dt ), HOFFSET( st, xunits ), HOFFSET( st, yunits )}; st st_buf[1]; size_t st_sizes[NSFIELDS] = { sizeof( st_buf[0].dt), sizeof( st_buf[0].xunits), sizeof( st_buf[0].yunits)}; status=H5TBread_table( section_group, "description", sizeof(st), st_offset, st_sizes, st_buf ); if (status < 0) { std::string errorMsg("Exception while reading data description in stfio::importHDF5File"); throw std::runtime_error(errorMsg); } dt = st_buf[0].dt; yunits = st_buf[0].yunits; H5Gclose( section_group ); } try { if ((int)ReturnData.size() #include #include Recording::Recording(void) : ChannelArray(0) { init(); } Recording::Recording(const Channel& c_Channel) : ChannelArray(1,c_Channel) { init(); } Recording::Recording(const std::vector& ChannelList) : ChannelArray(ChannelList) { init(); } Recording::Recording(std::size_t c_n_channels, std::size_t c_n_sections, std::size_t c_n_points) : ChannelArray(c_n_channels, Channel(c_n_sections, c_n_points)) { init(); } void Recording::init() { file_description = "\0"; global_section_description = "\0"; scaling = "\0"; comment = "\0"; xunits = "ms" ; dt = 1.0; // get current time time_t timer; timer = time(0); memcpy(&datetime, localtime(&timer), sizeof(datetime)); cc = 0; sc = 1; cs = 0; selectedSections = std::vector(0); selectBase = Vector_double(0); } Recording::~Recording() { } const Channel& Recording::at(std::size_t n_c) const { try { return ChannelArray.at(n_c); } catch (...) { throw; } } Channel& Recording::at(std::size_t n_c) { try { return ChannelArray.at(n_c); } catch (...) { throw; } } const std::string& Recording::GetDate() { // TODO: there should be a more elegant way than using variable 'date' date.resize(128); struct tm t = GetDateTime(); snprintf((char*)date.c_str(), 128, "%04i-%02i-%02i", t.tm_year+1900, t.tm_mon+1, t.tm_mday); return date; }; const std::string& Recording::GetTime() { // TODO: there should be a more elegant way than using variable 'time0' time0.resize(128); struct tm t = GetDateTime(); snprintf((char*)time0.c_str(), 128, "%02i:%02i:%02i", t.tm_hour,t.tm_min,t.tm_sec); return time0; }; int Recording::SetDate(const std::string& value) { struct tm t = GetDateTime(); #if HAVE_STRPTIME_H strptime(value.c_str(), "%F", &t); #else if ( sscanf(value.c_str(),"%i-%i-%i", &t.tm_year, &t.tm_mon, &t.tm_mday) || sscanf(value.c_str(),"%i.%i.%i", &t.tm_mday, &t.tm_mon, &t.tm_year) || sscanf(value.c_str(),"%i/%i/%i", &t.tm_mon, &t.tm_mday, &t.tm_year) ) { t.tm_mon--; if (t.tm_year < 50) t.tm_year += 100; else if (t.tm_year < 139); else if (t.tm_year > 1900) t.tm_year -= 1900; } else { // TODO: error handling fprintf(stderr,"SetDate(%s) failed\n",value.c_str()); return(-1); } #endif SetDateTime(t); return(0); } int Recording::SetTime(const std::string& value) { struct tm t = GetDateTime(); #if HAVE_STRPTIME_H strptime(value.c_str(), "%T", &t); #else if ( sscanf(value.c_str(),"%i-%i-%i", &t.tm_hour, &t.tm_min, &t.tm_sec) || sscanf(value.c_str(),"%i.%i.%i", &t.tm_hour, &t.tm_min, &t.tm_sec) || sscanf(value.c_str(),"%i:%i:%i", &t.tm_hour, &t.tm_min, &t.tm_sec) ) { ; // everthing is fine } else { // TODO: error handling fprintf(stderr,"SetTime(%s) failed\n",value.c_str()); return(-1); } #endif SetDateTime(t); return(0); } int Recording::SetTime(int hour, int minute, int sec) { datetime.tm_hour=hour; datetime.tm_min=minute; datetime.tm_sec=sec; return(0); } int Recording::SetDate(int year, int month, int mday) { datetime.tm_year=year; datetime.tm_mon=month; datetime.tm_mday=mday; return(0); } void Recording::SetDateTime(int year, int month, int mday,int hour, int minute, int sec) { datetime.tm_year=year; datetime.tm_mon=month; datetime.tm_mday=mday; datetime.tm_hour=hour; datetime.tm_min=minute; datetime.tm_sec=sec; } void Recording::InsertChannel(Channel& c_Channel, std::size_t pos) { try { if ( ChannelArray.at(pos).size() <= c_Channel.size() ) { ChannelArray.at(pos).resize( c_Channel.size() ); } // Resize sections if necessary: std::size_t n_sec = 0; for ( sec_it sit = c_Channel.get().begin(); sit != c_Channel.get().end(); ++sit ) { if ( ChannelArray.at(pos).at(n_sec).size() <= sit->size() ) { ChannelArray.at(pos).at(n_sec).get_w().resize( sit->size() ); } n_sec++; } } catch (...) { throw; } ChannelArray.at(pos) = c_Channel; } void Recording::CopyAttributes(const Recording& c_Recording) { file_description=c_Recording.file_description; global_section_description=c_Recording.global_section_description; scaling=c_Recording.scaling; datetime=c_Recording.datetime; comment=c_Recording.comment; for ( std::size_t n_ch = 0; n_ch < c_Recording.size(); ++n_ch ) { if ( size() > n_ch ) { ChannelArray[n_ch].SetYUnits( c_Recording[n_ch].GetYUnits() ); } } dt=c_Recording.dt; } void Recording::resize(std::size_t c_n_channels) { ChannelArray.resize(c_n_channels); } size_t Recording::GetChannelSize(std::size_t n_channel) const { try { return ChannelArray.at(n_channel).size(); } catch (...) { throw; } } void Recording::SetCurChIndex(size_t value) { if (value>=get().size()) { throw std::out_of_range("channel out of range in Recording::SetCurChIndex()"); } cc=value; } void Recording::SetSecChIndex(size_t value) { if (value>=get().size() || value==cc) { throw std::out_of_range("channel out of range in Recording::SetSecChIndex()"); } sc=value; } void Recording::SetCurSecIndex( size_t value ) { if (value >= get()[cc].size()) { throw std::out_of_range("channel out of range in Recording::SetCurSecIndex()"); } cs=value; } void Recording::SelectTrace(std::size_t sectionToSelect, std::size_t base_start, std::size_t base_end) { // Check range so that sectionToSelect can be used // without checking again: if (sectionToSelect>=curch().size()) { std::out_of_range e("subscript out of range in Recording::SelectTrace\n"); throw e; } selectedSections.push_back(sectionToSelect); double sumY=0; #ifdef _OPENMP #pragma omp parallel for reduction(+:sumY) #endif if (curch()[sectionToSelect].size()==0) { selectBase.push_back(0); } else { int start = base_start; int end = base_end; if (start > (int)curch()[sectionToSelect].size()-1) start = curch()[sectionToSelect].size()-1; if (start < 0) start = 0; if (end > (int)curch()[sectionToSelect].size()-1) end = curch()[sectionToSelect].size()-1; if (end < 0) end = 0; for (int i=start; i<=end; i++) { sumY += curch()[sectionToSelect][i]; } int n=(int)(end-start+1); selectBase.push_back(sumY/n); } } bool Recording::UnselectTrace(std::size_t sectionToUnselect) { //verify whether the trace has really been selected and find the //number of the trace within the selectedTraces array: bool traceSelected=false; std::size_t traceToRemove=0; for (std::size_t n=0; n < selectedSections.size() && !traceSelected; ++n) { if (selectedSections[n] == sectionToUnselect) traceSelected=true; if (traceSelected) traceToRemove=n; } //Shift the selectedTraces array by one position, beginning //with the trace to remove: if (traceSelected) { //shift traces by one position: for (std::size_t k=traceToRemove; k < GetSelectedSections().size()-1; ++k) { selectedSections[k]=selectedSections[k+1]; selectBase[k]=selectBase[k+1]; } // resize vectors: selectedSections.resize(selectedSections.size()-1); selectBase.resize(selectBase.size()-1); return true; } else { //msgbox return false; } } void Recording::SetXScale(double value) { dt=value; for (ch_it it1 = ChannelArray.begin(); it1 != ChannelArray.end(); it1++) { for (sec_it it2 = it1->get().begin(); it2 != it1->get().end(); it2++) { it2->SetXScale(value); } } } void Recording::MakeAverage(Section& AverageReturn, Section& SigReturn, std::size_t channel, const std::vector& section_index, bool isSig, const std::vector& shift) const { if (channel >= ChannelArray.size()) { throw std::out_of_range("Channel number out of range in Recording::MakeAverage"); } unsigned int n_sections = section_index.size(); if (shift.size() != n_sections) { throw std::out_of_range("Shift out of range in Recording::MakeAverage"); } for (unsigned int l = 0; l < n_sections; ++l) { if (section_index[l] >= ChannelArray[channel].size()) { throw std::out_of_range("Section number out of range in Recording::MakeAverage"); } if (AverageReturn.size() + shift[l] > ChannelArray[channel][section_index[l]].size()) { throw std::out_of_range("Sampling point out of range in Recording::MakeAverage"); } } for (unsigned int k=0; k < AverageReturn.size(); ++k) { AverageReturn[k]=0.0; //Calculate average for (unsigned int l = 0; l < n_sections; ++l) { AverageReturn[k] += ChannelArray[channel][section_index[l]][k+shift[l]]; } AverageReturn[k] /= n_sections; // set sample interval of averaged traces AverageReturn.SetXScale(ChannelArray[channel][section_index[0]].GetXScale()); if (isSig) { SigReturn[k]=0.0; //Calculate variance for (unsigned int l=0; l < n_sections; ++l) { SigReturn[k] += pow(ChannelArray[channel][section_index[l]][k+shift[l]] - AverageReturn[k], 2); } SigReturn[k] /= (n_sections - 1); SigReturn[k]=sqrt(SigReturn[k]); } } } void Recording::AddRec(const Recording &toAdd) { // check number of channels: if (toAdd.size()!=size()) { throw std::runtime_error("Number of channels doesn't match"); } // check dt: if (toAdd.GetXScale()!=dt) { throw std::runtime_error("Sampling interval doesn't match"); } // add sections: std::vector< Channel >::iterator it; std::size_t n_c = 0; for (it = ChannelArray.begin();it != ChannelArray.end(); it++) { std::size_t old_size = it->size(); it->resize(toAdd[n_c].size()+old_size); for (std::size_t n_s=old_size;n_sInsertSection(toAdd[n_c].at(n_s-old_size),n_s); } catch (...) { throw; } } n_c++; } } stimfit-0.13.13/src/libstfio/section.cpp0000775000175000017500000000366212275677732015067 00000000000000// This program is free software; you can redistribute it and/or // modify it under the terms of the GNU General Public License // as published by the Free Software Foundation; either version 2 // of the License, or (at your option) any later version. // This program is distributed in the hope that it will be useful, // but WITHOUT ANY WARRANTY; without even the implied warranty of // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the // GNU General Public License for more details. // You should have received a copy of the GNU General Public License // along with this program; if not, write to the Free Software // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA. #include "./stfio.h" #include "./section.h" // Definitions------------------------------------------------------------ // Default constructor definition // For reasons why to use member initializer lists instead of assignments // within the constructor, see [1]248 and [2]28 Section::Section(void) : section_description(), x_scale(1.0), data(0) {} Section::Section( const Vector_double& valA, const std::string& label ) : section_description(label), x_scale(1.0), data(valA) {} Section::Section(std::size_t size, const std::string& label) : section_description(label), x_scale(1.0), data(size) {} Section::~Section(void) { } double Section::at(std::size_t at_) const { if (at_>=data.size()) { std::out_of_range e("subscript out of range in class Section"); throw (e); } return data[at_]; } double& Section::at(std::size_t at_) { if (at_>=data.size()) { std::out_of_range e("subscript out of range in class Section"); throw (e); } return data[at_]; } void Section::SetXScale( double value ) { if ( x_scale >= 0 ) x_scale=value; else throw std::runtime_error( "Attempt to set x-scale <= 0" ); } stimfit-0.13.13/src/libstfio/recording.h0000775000175000017500000003545312275705057015037 00000000000000// This program is free software; you can redistribute it and/or // modify it under the terms of the GNU General Public License // as published by the Free Software Foundation; either version 2 // of the License, or (at your option) any later version. // This program is distributed in the hope that it will be useful, // but WITHOUT ANY WARRANTY; without even the implied warranty of // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the // GNU General Public License for more details. // You should have received a copy of the GNU General Public License // along with this program; if not, write to the Free Software // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA. /*! \file recording.h * \author Christoph Schmidt-Hieber * \date 2008-01-16 * \brief Declares the Recording class. */ #ifndef _RECORDING_H #define _RECORDING_H /*! \defgroup stfgen Generic stimfit classes and functions * @{ */ #include "./channel.h" // #include "./section.h" // #include "./stfio.h" class Section; //! Represents the data within a file. /*! Contains an array of channels that can be accessed either via at() (range-checked, * will throw an exception if out of range) or the []-operator (range unchecked). Moreover * all the metadata such as time, date, samling rate and comments are stored here. */ class StfioDll Recording { public: //ctor/dtor------------------------------------------------------- //! Default constuctor explicit Recording(); //! Constructor /*! \param c_Channel The Channel from which to construct a new Recording. */ explicit Recording(const Channel& c_Channel); //! Constructor /*! \param ChannelList A vector of channels from which to construct a new Recording. */ explicit Recording(const std::vector& ChannelList); //! Constructor /*! Setting the number of channels and sections at construction time will avoid unnecessary * memory re-allocations. * \param c_n_channels The number of channels. * \param c_n_sections The number of sections. * \param c_n_points The number of sampling points per section. */ explicit Recording( std::size_t c_n_channels, std::size_t c_n_sections = 0, std::size_t c_n_points = 0 ); //! Destructor virtual ~Recording(); //member access functions: read----------------------------------- //! Retrieves the number of sections in a channel. /*! \param n_channel The index of the channel (range-checked). * \return The number of sections in n_channel. */ std::size_t GetChannelSize(std::size_t n_channel) const; //! Retrieves the channels (read-only). /*! \return A vector containing the channels. */ const std::vector& get() const { return ChannelArray; } //! Retrieves the channels (read and write). /*! \return A vector containing the channels. */ std::vector& get() { return ChannelArray; } //! Retrieves the file description. /*! \return The file description. */ const std::string& GetFileDescription() const { return file_description; } //! Retrieves the common section description. /*! \return The common section description. */ const std::string& GetGlobalSectionDescription() const { return global_section_description; } //! Retrieves the scaling as a string. /*! \return A string containing the description. */ const std::string& GetScaling() const { return scaling; } //! Retrieves the time of recording as a string. /*! \return A string containing the time of recording. */ const std::string& GetTime(); //! Retrieves the date of recording as a string. /*! \return A string containing the date of recording. */ const std::string& GetDate(); //! Retrieves the date of recording as a string. /*! \return A string containing the date of recording. */ struct tm GetDateTime() const { return datetime; }; //! Retrieves a comment string. /*! \return A string containing a comment. */ const std::string& GetComment() const { return comment; } //! Retrieves the x units. /*! \return The x units. Currently hard-coded to be "ms". */ const std::string& GetXUnits() const { return xunits; } //! Retrieves the size of the channel array. /*! \return The size of the channel array. */ std::size_t size() const { return ChannelArray.size(); } //! Retrieves the x scaling (sampling interval). /*! \return The x scaling. */ double GetXScale() const { return dt; } //! Retrieves the sampling rate ( 1 / x-scale ) /*! \return The sampling rate. */ double GetSR() const { return 1.0/dt; } //! Retrieves the index of the current channel. /*! \return The index of the current channel. */ std::size_t GetCurChIndex() const { return cc; } //! Retrieves the index of the second channel. /*! \return The index of the second channel. */ std::size_t GetSecChIndex() const { return sc; } //! Retrieves the index of the current section. /*! \return The index of the current section. */ std::size_t GetCurSecIndex() const { return cs; } //! Retrieves the indices of the selected sections (read-only). /*! \return A vector containing the indices of the selected sections. */ const std::vector& GetSelectedSections() const { return selectedSections; } //! Retrieves the indices of the selected sections (read and write). /*! \return A vector containing the indices of the selected sections. */ std::vector& GetSelectedSectionsW() { return selectedSections; } //! Retrieves the stored baseline values of the selected sections (read-only). /*! \return A vector containing the stored baseline values of the selected sections. */ const Vector_double& GetSelectBase() const { return selectBase; } //! Retrieves the stored baseline values of the selected sections (read and write). /*! \return A vector containing the stored baseline values of the selected sections. */ Vector_double& GetSelectBaseW() { return selectBase; } //! Retrieves the currently accessed section in the active channel (read-only) /*! \return The currently accessed section in the active channel. */ const Section& cursec() const { return (*this)[cc][cs]; } //! Retrieves the currently accessed section in the active channel (read and write) /*! \return The currently accessed section in the active channel. */ Section& cursec() { return (*this)[cc][cs]; } //! Retrieves the currently accessed section in the second (reference) channel (read-only) /*! \return The currently accessed section in the second (reference) channel. */ const Section& secsec() const { return (*this)[sc][cs]; } //! Retrieves the active channel (read-only) /*! \return The active channel. */ const Channel& curch() const { return (*this)[cc]; } //! Retrieves active channel (read and write) /*! \return The active channel. */ Channel& curch() { return (*this)[cc]; } //! Retrieves the second (reference) channel (read-only) /*! \return The second (reference) channel. */ const Channel& secch() const { return (*this)[sc]; } //! Range-checked access to a channel (read-only). /*! Will throw std::out_of_range if out of range. * \param n_c The index of the channel. * \return The channel at index n_c. */ const Channel& at(std::size_t n_c) const; //! Range-checked access to a channel (read and write). /*! Will throw std::out_of_range if out of range. * \param n_c The index of the channel. * \return The channel at index n_c. */ Channel& at(std::size_t n_c); //member access functions: write--------------------------------- //! Sets the file description. /*! \param value The file description. */ void SetFileDescription(const std::string& value) { file_description=value; } //! Sets the common section description. /*! \param value The common section description. */ void SetGlobalSectionDescription(const std::string& value) { global_section_description=value; } //! Sets the scaling as a string. /*! \param value A string containing the description. */ void SetScaling(const std::string& value) { scaling=value; } //! Sets the time of recording as a string. /*! \param value A string containing the time of recording. * \return 0 in case of success, non-zero in case of failure */ int SetTime(const std::string& value); int SetTime(int hour, int minute, int sec); //! Sets the date of recording as a string. /*! \param value A string containing the date of recording. * \return 0 in case of success, non-zero in case of failure */ int SetDate(const std::string& value); int SetDate(int year, int month, int mday); //! Sets the date and time of recording as struct tm /*! \param value has type struct tm */ void SetDateTime(const struct tm &value) { memcpy(&datetime, &value, sizeof(struct tm)); } void SetDateTime(int year, int month, int mday, int hour, int minute, int sec) ; //! Sets a comment string. /*! \param value A string containing a comment. */ void SetComment(const std::string& value) { comment=value; } //! Sets the y units for a channel. /*! \param n_channel The channel index for which to set the units. * \param value A string containing the y units. */ void SetGlobalYUnits(std::size_t n_channel, const std::string& value); //! Sets the x units. /*! \param value A string containing the x units. */ void SetXUnits(const std::string& value) { xunits=value; } //! Sets the x scaling. /*! Note that setting the global x-scale will set it for all sections * \param value The x scaling. */ void SetXScale(double value); //! Sets the index of the current channel. /*! \param value The index of the current channel. */ void SetCurChIndex(std::size_t value); //! Sets the index of the second channel. /*! \param value The index of the second channel. */ void SetSecChIndex(std::size_t value); //! Sets the index of the current section. /*! \param value The index of the current section. */ void SetCurSecIndex(std::size_t value); //misc----------------------------------------------------------- //! Resize the Recording to a new number of channels. /*! Resizes both the channel and the global y units arrays. * \param c_n_channels The new number of channels. */ virtual void resize(std::size_t c_n_channels); //! Insert a Channel at a given position. /*! Will throw std::out_of_range if range check fails. * \param c_Channel The Channel to be inserted. * \param pos The position at which to insert the channel (0-based). */ virtual void InsertChannel(Channel& c_Channel, std::size_t pos); //! Copy descriptive attributes from another Recording to this Recording. /*! This will copy the file and global section decription, the scaling, time, date, * comment and global y units strings and the x-scale. * \param c_Recording The Recording from which to copy the attributes. */ void CopyAttributes(const Recording& c_Recording); //! Calculates an average of several traces. /*! \param AverageReturn The average will be returned in this variable by passing * a reference. AverageReturn has to have the correct size upon entering * this function already, it won't be resized. * \param SigReturn The standard deviation will be returned in this variable by * passing a reference if isSig == true. SigReturn has to have the correct * size upon entering this function already, it won't be resized. * \param channel The index of the channel to be used. * \param section_index A vector containing the indices of the sections to be * used for the average. * \param isSig Set to true if the standard deviation should be calculated as well. * \param shift A vector indicating by how many data points each section should be * shifted before averaging. */ void MakeAverage( Section& AverageReturn, Section& SigReturn, std::size_t channel, const std::vector& section_index, bool isSig, const std::vector& shift) const; //! Add a Recording at the end of this Recording. /*! \param toAdd The Recording to be added. */ void AddRec(const Recording& toAdd); //! Selects a section /*! \param sectionToSelect The index of the section to be selected. * \param base_start Start index for baseline * \param base_end End index for baseline */ void SelectTrace(std::size_t sectionToSelect, std::size_t base_start, std::size_t base_end); //! Unselects a section if it was selected before /*! \param sectionToUnselect The index of the section to be unselected. * \return true if the section was previously selected, false otherwise. */ bool UnselectTrace(std::size_t sectionToUnselect); //operators------------------------------------------------------ //! Unchecked channel access (read and write) /*! Use at() for range-checked access. * \param at The channel index. */ Channel& operator[](std::size_t at) { return ChannelArray[at]; } //! Unchecked channel access (read-only) /*! Use at() for range-checked access. * \param at The channel index. */ const Channel& operator[](std::size_t at) const { return ChannelArray[at]; } private: std::vector ChannelArray; std::string global_section_description, scaling; // only neeed for GetData() and GetTime(): should be replaced by alternative interface. #ifndef _MSC_VER __attribute__ ((deprecated)) #endif std::string time0, date; /* public: */ double dt; std::string file_description, comment, xunits; struct tm datetime; // currently accessed channel: std::size_t cc; // second channel: std::size_t sc; // currently accessed section: std::size_t cs; // Indices of the selected sections std::vector selectedSections; // Base line value for each selected trace Vector_double selectBase; void init(); }; /*@}*/ #endif stimfit-0.13.13/src/libstfio/biosig/0000775000175000017500000000000012275713011014216 500000000000000stimfit-0.13.13/src/libstfio/biosig/biosiglib.h0000664000175000017500000000506412275677732016302 00000000000000// This program is free software; you can redistribute it and/or // modify it under the terms of the GNU General Public License // as published by the Free Software Foundation; either version 2 // of the License, or (at your option) any later version. // This program is distributed in the hope that it will be useful, // but WITHOUT ANY WARRANTY; without even the implied warranty of // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the // GNU General Public License for more details. // You should have received a copy of the GNU General Public License // along with this program; if not, write to the Free Software // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA. // This program is free software; you can redistribute it and/or // modify it under the terms of the GNU General Public License // as published by the Free Software Foundation; either version 2 // of the License, or (at your option) any later version. // This program is distributed in the hope that it will be useful, // but WITHOUT ANY WARRANTY; without even the implied warranty of // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the // GNU General Public License for more details. // You should have received a copy of the GNU General Public License // along with this program; if not, write to the Free Software // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA. /*! \file biosiglib.h * \author Christoph Schmidt-Hieber * \date 2011-02-18 * \brief Use biosig to read files */ #ifndef _BIOSIGLIB_H #define _BIOSIGLIB_H #include "../stfio.h" namespace stfio { //! Open an BIOSIG file and store its contents to a Recording object. /*! \param fName The full path to the file to be opened. * \param ReturnData On entry, an empty Recording object. On exit, * the data stored in \e fName. * \param progress True if the progress dialog should be updated. * * Return value: in case of success stfio::biosig is returned, * if the file format is recognized, the corresponding filetype is returned, * if the filetype is not recognized or not supported. stfio::none is returned. */ stfio::filetype importBiosigFile(const std::string& fName, Recording& ReturnData, ProgressInfo& progDlg); //! Export a Recording to a GDF file using biosig. /*! \param fName Full path to the file to be written. * \param WData The data to be exported. */ StfioDll bool exportBiosigFile(const std::string& fName, const Recording& WData, ProgressInfo& progDlg); } #endif stimfit-0.13.13/src/libstfio/biosig/biosiglib.cpp0000664000175000017500000010073212275677732016633 00000000000000// This program is free software; you can redistribute it and/or // modify it under the terms of the GNU General Public License // as published by the Free Software Foundation; either version 2 // of the License, or (at your option) any later version. // This program is distributed in the hope that it will be useful, // but WITHOUT ANY WARRANTY; without even the implied warranty of // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the // GNU General Public License for more details. // You should have received a copy of the GNU General Public License // along with this program; if not, write to the Free Software // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA. // Copyright 2012,2013 Alois Schloegl, IST Austria #include #include "../stfio.h" #if defined(WITH_BIOSIG2) #include #if (BIOSIG_VERSION < 10506) #error libbiosig2 v1.5.6 or later is required #endif #if (BIOSIG_VERSION > 10506) #define DONOTUSE_DYNAMIC_ALLOCATION_FOR_CHANSPR #endif #else #include #if defined(_MSC_VER) //#if (BIOSIG_VERSION < 10507) #error libbiosig is not ABI compatible //#endif #endif #endif /* these are internal biosig functions, defined in biosig-dev.h which is not always available */ extern "C" size_t ifwrite(void* buf, size_t size, size_t nmemb, HDRTYPE* hdr); extern "C" uint32_t lcm(uint32_t A, uint32_t B); #if !defined(__MINGW32__) && !defined(_MSC_VER) #if defined (__APPLE__) #include #else #include #endif #endif #include "./biosiglib.h" /* Redefine BIOSIG_VERSION for versions < 1 */ #if (BIOSIG_VERSION_MAJOR < 1) #undef BIOSIG_VERSION #ifndef BIOSIG_PATCHLEVEL #define BIOSIG_PATCHLEVEL BIOSIG_VERSION_STEPPING #endif #define BIOSIG_VERSION (BIOSIG_VERSION_MAJOR * 10000 + BIOSIG_VERSION_MINOR * 100 + BIOSIG_PATCHLEVEL) #endif stfio::filetype stfio_file_type(HDRTYPE* hdr) { #ifdef __LIBBIOSIG2_H__ switch (biosig_get_filetype(hdr)) { #else switch (hdr->TYPE) { #endif #if (BIOSIG_VERSION > 10500) case ABF2: return stfio::abf; #endif case ABF: return stfio::abf; case ATF: return stfio::atf; case CFS: return stfio::cfs; case HEKA: return stfio::heka; case HDF: return stfio::hdf5; #if (BIOSIG_VERSION > 10403) case AXG: return stfio::axg; case IBW: return stfio::igor; case SMR: return stfio::son; #endif default: return stfio::none; } } stfio::filetype stfio::importBiosigFile(const std::string &fName, Recording &ReturnData, ProgressInfo& progDlg) { std::string errorMsg("Exception while calling std::importBSFile():\n"); std::string yunits; stfio::filetype type; // ===================================================================================================================== // // importBiosig opens file with libbiosig // - performs an automated identification of the file format // - and decides whether the data is imported through importBiosig (currently CFS, HEKA, ABF1, GDF, and others) // - or handed back to other import*File functions (currently ABF2, AXG, HDF5) // // There are two implementations, level-1 and level-2 interface of libbiosig. // level 1 is used when -DWITH_BIOSIG, -lbiosig // level 2 is used when -DWITH_BIOSIG2, -lbiosig2 // // level 1 is better tested, but it does not provide ABI compatibility between MinGW and VisualStudio // level 2 interface has been developed to provide ABI compatibility, but it is less tested // and the API might still undergo major changes. // ===================================================================================================================== #ifdef __LIBBIOSIG2_H__ HDRTYPE* hdr = sopen( fName.c_str(), "r", NULL ); if (hdr==NULL) { ReturnData.resize(0); return stfio::none; } type = stfio_file_type(hdr); if (biosig_check_error(hdr)) { ReturnData.resize(0); destructHDR(hdr); return type; } enum FileFormat biosig_filetype=biosig_get_filetype(hdr); if (biosig_filetype==ATF || biosig_filetype==ABF2) { // ATF and ABF2 support should be handled by importATF, and importABF not importBiosig ReturnData.resize(0); destructHDR(hdr); return type; } // ensure the event table is in chronological order sort_eventtable(hdr); // allocate local memory for intermediate results; const int strSize=100; char str[strSize]; /* count sections and generate list of indices indicating start and end of sweeps */ double fs = biosig_get_eventtable_samplerate(hdr); size_t numberOfEvents = biosig_get_number_of_events(hdr); uint32_t nsections = biosig_get_number_of_segments(hdr); size_t *SegIndexList = (size_t*)malloc((nsections+1)*sizeof(size_t)); SegIndexList[0] = 0; SegIndexList[nsections] = biosig_get_number_of_samples(hdr); std::string annotationTableDesc = std::string(); for (size_t k=0, n=0; k < numberOfEvents; k++) { uint32_t pos; uint16_t typ; char *desc; /* uint32_t dur; uint16_t chn; gdftype timestamp; */ biosig_get_nth_event(hdr, k, &typ, &pos, NULL, NULL, NULL, &desc); if (typ == 0x7ffe) { SegIndexList[++n] = pos; } else if (typ < 256) { sprintf(str,"%f s:\t%s\n", pos/fs, desc); annotationTableDesc += std::string( str ); } } int numberOfChannels = biosig_get_number_of_channels(hdr); /************************************************************************* rescale data to mV and pA *************************************************************************/ for (int ch=0; ch < numberOfChannels; ++ch) { CHANNEL_TYPE *hc = biosig_get_channel(hdr, ch); switch (biosig_channel_get_physdimcode(hc) & 0xffe0) { case 4256: // Volt //biosig_channel_scale_to_unit(hc, "mV"); biosig_channel_change_scale_to_physdimcode(hc, 4274); break; case 4160: // Ampere //biosig_channel_scale_to_unit(hc, "pA"); biosig_channel_change_scale_to_physdimcode(hc, 4181); break; } } /************************************************************************* read bulk data *************************************************************************/ biosig_data_type *data = biosig_get_data(hdr, 0); size_t SPR = biosig_get_number_of_samples(hdr); #ifdef _STFDEBUG std::cout << "Number of events: " << numberOfEvents << std::endl; /*int res = */ hdr2ascii(hdr, stdout, 4); #endif for (int NS=0; NS < numberOfChannels; ) { CHANNEL_TYPE *hc = biosig_get_channel(hdr, NS); Channel TempChannel(nsections); TempChannel.SetChannelName(biosig_channel_get_label(hc)); TempChannel.SetYUnits(biosig_channel_get_physdim(hc)); for (size_t ns=1; ns<=nsections; ns++) { size_t SPS = SegIndexList[ns]-SegIndexList[ns-1]; // length of segment, samples per segment int progbar = 100.0*(1.0*ns/nsections + NS)/numberOfChannels; std::ostringstream progStr; progStr << "Reading channel #" << NS + 1 << " of " << numberOfChannels << ", Section #" << ns << " of " << nsections; progDlg.Update(progbar, progStr.str()); /* unused // char sweepname[20]; sprintf(sweepname,"sweep %i",(int)ns); */ Section TempSection( SPS, // TODO: hdr->nsamplingpoints[nc][ns] "" // TODO: hdr->sectionname[nc][ns] ); std::copy(&(data[NS*SPR + SegIndexList[ns-1]]), &(data[NS*SPR + SegIndexList[ns]]), TempSection.get_w().begin() ); try { TempChannel.InsertSection(TempSection, ns-1); } catch (...) { ReturnData.resize(0); destructHDR(hdr); return type; } } try { if ((int)ReturnData.size() < numberOfChannels) { ReturnData.resize(numberOfChannels); } ReturnData.InsertChannel(TempChannel, NS++); } catch (...) { ReturnData.resize(0); destructHDR(hdr); return type; } } free(SegIndexList); ReturnData.SetComment ( biosig_get_recording_id(hdr) ); sprintf(str,"v%i.%i.%i (compiled on %s %s)",BIOSIG_VERSION_MAJOR,BIOSIG_VERSION_MINOR,BIOSIG_PATCHLEVEL,__DATE__,__TIME__); std::string Desc = std::string("importBiosig with libbiosig ")+std::string(str) + " "; const char* tmpstr; if ((tmpstr=biosig_get_technician(hdr))) Desc += std::string ("\nTechnician:\t") + std::string (tmpstr) + " "; Desc += std::string( "\nCreated with: "); if ((tmpstr=biosig_get_manufacturer_name(hdr))) Desc += std::string( tmpstr ) + " "; if ((tmpstr=biosig_get_manufacturer_model(hdr))) Desc += std::string( tmpstr ) + " "; if ((tmpstr=biosig_get_manufacturer_version(hdr))) Desc += std::string( tmpstr ) + " "; if ((tmpstr=biosig_get_manufacturer_serial_number(hdr))) Desc += std::string( tmpstr ) + " "; Desc += std::string ("\nUser specified Annotations:\n")+annotationTableDesc; ReturnData.SetFileDescription(Desc); #if (BIOSIG_VERSION > 10509) tmpstr = biosig_get_application_specific_information(hdr); if (tmpstr != NULL) /* MSVC2008 can not properly handle std::string( (char*)NULL ) */ ReturnData.SetGlobalSectionDescription(tmpstr); #endif ReturnData.SetXScale(1000.0/biosig_get_samplerate(hdr)); ReturnData.SetXUnits("ms"); ReturnData.SetScaling("biosig scaling factor"); /************************************************************************* Date and time conversion *************************************************************************/ struct tm T; biosig_get_startdatetime(hdr, &T); ReturnData.SetDateTime(T); destructHDR(hdr); #else // #ifndef __LIBBIOSIG2_H__ HDRTYPE* hdr = sopen( fName.c_str(), "r", NULL ); if (hdr==NULL) { ReturnData.resize(0); return stfio::none; } type = stfio_file_type(hdr); #if !defined(BIOSIG_VERSION) || (BIOSIG_VERSION < 10501) if (hdr->TYPE==ABF) { /* biosig v1.5.0 and earlier does not always return with a proper error message for ABF files. This causes problems with the ABF fallback mechanism */ #else if ( hdr->TYPE==ABF2 ) { // ABF2 support should be handled by importABF not importBiosig ReturnData.resize(0); destructHDR(hdr); return type; } if (hdr->TYPE==ABF && hdr->AS.B4C_ERRNUM) { /* this triggers the fall back mechanims w/o reporting an error message */ #endif ReturnData.resize(0); destructHDR(hdr); // free allocated memory return type; } #if defined(BIOSIG_VERSION) && (BIOSIG_VERSION > 10400) if (hdr->AS.B4C_ERRNUM) { #else if (B4C_ERRNUM) { #endif ReturnData.resize(0); destructHDR(hdr); // free allocated memory return type; } if ( hdr->TYPE==ATF ) { // ATF support should be handled by importATF not importBiosig ReturnData.resize(0); destructHDR(hdr); return type; } // ensure the event table is in chronological order sort_eventtable(hdr); // allocate local memory for intermediate results; const int strSize=100; char str[strSize]; /* count sections and generate list of indices indicating start and end of sweeps */ size_t numberOfEvents = hdr->EVENT.N; size_t LenIndexList = 256; if (LenIndexList > numberOfEvents) LenIndexList = numberOfEvents + 2; size_t *SegIndexList = (size_t*)malloc(LenIndexList*sizeof(size_t)); uint32_t nsections = 0; SegIndexList[nsections] = 0; size_t MaxSectionLength = 0; for (size_t k=0; k <= numberOfEvents; k++) { if (LenIndexList <= nsections+2) { // allocate more memory as needed LenIndexList *=2; SegIndexList = (size_t*)realloc(SegIndexList, LenIndexList*sizeof(size_t)); } /* count number of sections and stores it in nsections; EVENT.TYP==0x7ffe indicate number of breaks between sweeps SegIndexList includes index to first sample and index to last sample, thus, the effective length of SegIndexList is the number of 0x7ffe plus two. */ if (0) ; else if (k >= hdr->EVENT.N) SegIndexList[++nsections] = hdr->NRec*hdr->SPR; else if (hdr->EVENT.TYP[k]==0x7ffe) SegIndexList[++nsections] = hdr->EVENT.POS[k]; else continue; size_t SPS = SegIndexList[nsections]-SegIndexList[nsections-1]; // length of segment, samples per segment if (MaxSectionLength < SPS) MaxSectionLength = SPS; } int numberOfChannels = 0; for (int k=0; k < hdr->NS; k++) if (hdr->CHANNEL[k].OnOff==1) numberOfChannels++; /************************************************************************* rescale data to mV and pA *************************************************************************/ for (int ch=0; ch < hdr->NS; ++ch) { CHANNEL_TYPE *hc = hdr->CHANNEL+ch; if (hc->OnOff != 1) continue; double scale = PhysDimScale(hc->PhysDimCode); switch (hc->PhysDimCode & 0xffe0) { case 4256: // Volt hc->PhysDimCode = 4274; // = PhysDimCode("mV"); scale *=1e3; // V->mV hc->PhysMax *= scale; hc->PhysMin *= scale; hc->Cal *= scale; hc->Off *= scale; break; case 4160: // Ampere hc->PhysDimCode = 4181; // = PhysDimCode("pA"); scale *=1e12; // A->pA hc->PhysMax *= scale; hc->PhysMin *= scale; hc->Cal *= scale; hc->Off *= scale; break; } } /************************************************************************* read bulk data *************************************************************************/ hdr->FLAG.ROW_BASED_CHANNELS = 0; /* size_t blks = */ sread(NULL, 0, hdr->NRec, hdr); biosig_data_type *data = hdr->data.block; size_t SPR = hdr->NRec*hdr->SPR; #ifdef _STFDEBUG std::cout << "Number of events: " << numberOfEvents << std::endl; /*int res = */ hdr2ascii(hdr, stdout, 4); #endif int NS = 0; // number of non-empty channels for (size_t nc=0; nc < hdr->NS; ++nc) { if (hdr->CHANNEL[nc].OnOff == 0) continue; Channel TempChannel(nsections); TempChannel.SetChannelName(hdr->CHANNEL[nc].Label); #if defined(BIOSIG_VERSION) && (BIOSIG_VERSION > 10301) TempChannel.SetYUnits(PhysDim3(hdr->CHANNEL[nc].PhysDimCode)); #else PhysDim(hdr->CHANNEL[nc].PhysDimCode,str); TempChannel.SetYUnits(str); #endif for (size_t ns=1; ns<=nsections; ns++) { size_t SPS = SegIndexList[ns]-SegIndexList[ns-1]; // length of segment, samples per segment int progbar = 100.0*(1.0*ns/nsections + NS)/numberOfChannels; std::ostringstream progStr; progStr << "Reading channel #" << NS + 1 << " of " << numberOfChannels << ", Section #" << ns << " of " << nsections; progDlg.Update(progbar, progStr.str()); /* unused // char sweepname[20]; sprintf(sweepname,"sweep %i",(int)ns); */ Section TempSection( SPS, // TODO: hdr->nsamplingpoints[nc][ns] "" // TODO: hdr->sectionname[nc][ns] ); std::copy(&(data[NS*SPR + SegIndexList[ns-1]]), &(data[NS*SPR + SegIndexList[ns]]), TempSection.get_w().begin() ); try { TempChannel.InsertSection(TempSection, ns-1); } catch (...) { ReturnData.resize(0); destructHDR(hdr); return type; } } try { if ((int)ReturnData.size() < numberOfChannels) { ReturnData.resize(numberOfChannels); } ReturnData.InsertChannel(TempChannel, NS++); } catch (...) { ReturnData.resize(0); destructHDR(hdr); return type; } } free(SegIndexList); ReturnData.SetComment ( hdr->ID.Recording ); sprintf(str,"v%i.%i.%i (compiled on %s %s)",BIOSIG_VERSION_MAJOR,BIOSIG_VERSION_MINOR,BIOSIG_PATCHLEVEL,__DATE__,__TIME__); std::string Desc = std::string("importBiosig with libbiosig ")+std::string(str); if (hdr->ID.Technician) Desc += std::string ("\nTechnician:\t") + std::string (hdr->ID.Technician); Desc += std::string( "\nCreated with: "); if (hdr->ID.Manufacturer.Name) Desc += std::string( hdr->ID.Manufacturer.Name ); if (hdr->ID.Manufacturer.Model) Desc += std::string( hdr->ID.Manufacturer.Model ); if (hdr->ID.Manufacturer.Version) Desc += std::string( hdr->ID.Manufacturer.Version ); if (hdr->ID.Manufacturer.SerialNumber) Desc += std::string( hdr->ID.Manufacturer.SerialNumber ); Desc += std::string ("\nUser specified Annotations:\n"); for (size_t k=0; k < numberOfEvents; k++) { if (hdr->EVENT.TYP[k] < 256) { sprintf(str,"%f s:\t",hdr->EVENT.POS[k]/hdr->EVENT.SampleRate); Desc += std::string( str ); Desc += std::string( hdr->EVENT.CodeDesc[hdr->EVENT.TYP[k]] ) + "\n"; } } ReturnData.SetFileDescription(Desc); // hdr->AS.bci2000 is an alias to hdr->AS.fpulse, which available only in libbiosig v1.6.0 or later if (hdr->AS.bci2000) ReturnData.SetGlobalSectionDescription(std::string(hdr->AS.bci2000)); ReturnData.SetXScale(1000.0/hdr->SampleRate); ReturnData.SetXUnits("ms"); ReturnData.SetScaling("biosig scaling factor"); /************************************************************************* Date and time conversion *************************************************************************/ struct tm T; #if (BIOSIG_VERSION_MAJOR > 0) gdf_time2tm_time_r(hdr->T0, &T); #else struct tm* Tp; Tp = gdf_time2tm_time(hdr->T0); T = *Tp; #endif ReturnData.SetDateTime(T); destructHDR(hdr); #endif return stfio::biosig; } // ===================================================================================================================== // // Save file with libbiosig into GDF format // // There basically two implementations, one with libbiosig before v1.6.0 and // and one for libbiosig v1.6.0 and later // // ===================================================================================================================== bool stfio::exportBiosigFile(const std::string& fName, const Recording& Data, stfio::ProgressInfo& progDlg) { /* converts the internal data structure to libbiosig's internal structure and saves the file as gdf file. The data in converted into the raw data format, and not into the common data matrix. */ #ifdef __LIBBIOSIG2_H__ size_t numberOfChannels = Data.size(); HDRTYPE* hdr = constructHDR(numberOfChannels, 0); /* Initialize all header parameters */ biosig_set_filetype(hdr, GDF); biosig_set_startdatetime(hdr, Data.GetDateTime()); const char *xunits = Data.GetXUnits().c_str(); uint16_t pdc = PhysDimCode(xunits); if ((pdc & 0xffe0) != PhysDimCode("s")) { fprintf(stderr,"Stimfit exportBiosigFile: xunits [%s] has not proper units, assume [ms]\n",Data.GetXUnits().c_str()); pdc = PhysDimCode("ms"); } double fs = 1.0/(PhysDimScale(pdc) * Data.GetXScale()); biosig_set_samplerate(hdr, fs); biosig_set_flags(hdr, 0, 0, 0); size_t k, m, numberOfEvents=0; size_t NRec=0; // corresponds to hdr->NRec size_t SPR=1; // corresponds to hdr->SPR size_t chSPR=0; // corresponds to hc->SPR /* Initialize all channel parameters */ #ifndef DONOTUSE_DYNAMIC_ALLOCATION_FOR_CHANSPR size_t *chanSPR = (size_t*)malloc(numberOfChannels*sizeof(size_t)); #endif for (k = 0; k < numberOfChannels; ++k) { CHANNEL_TYPE *hc = biosig_get_channel(hdr, k); biosig_channel_set_datatype_to_double(hc); biosig_channel_set_scaling(hc, 1e9, -1e9, 1e9, -1e9); biosig_channel_set_label(hc, Data[k].GetChannelName().c_str()); biosig_channel_set_physdim(hc, Data[k].GetYUnits().c_str()); biosig_channel_set_filter(hc, NAN, NAN, NAN); biosig_channel_set_timing_offset(hc, 0.0); biosig_channel_set_impedance(hc, NAN); chSPR = SPR; // each segment gets one marker, roughly numberOfEvents += Data[k].size(); size_t m,len = 0; for (len=0, m = 0; m < Data[k].size(); ++m) { unsigned div = lround(Data[k][m].GetXScale()/Data.GetXScale()); chSPR = lcm(chSPR,div); // sampling interval of m-th segment in k-th channel len += div*Data[k][m].size(); } SPR = lcm(SPR, chSPR); /* hc->SPR (i.e. chSPR) is 'abused' to store final hdr->SPR/hc->SPR, this is corrected in the loop below its a hack to avoid the need for another malloc(). */ #ifdef DONOTUSE_DYNAMIC_ALLOCATION_FOR_CHANSPR biosig_channel_set_samples_per_record(hc, chSPR); #else chanSPR[k]=chSPR; #endif if (k==0) { NRec = len; } else if ((size_t)NRec != len) { destructHDR(hdr); throw std::runtime_error("File can't be exported:\n" "No data or traces have different sizes" ); return false; } } biosig_set_number_of_samples(hdr, NRec, SPR); size_t bpb = 0; for (k = 0; k < numberOfChannels; ++k) { CHANNEL_TYPE *hc = biosig_get_channel(hdr, k); // the 'abuse' of hc->SPR described above is corrected #ifdef DONOTUSE_DYNAMIC_ALLOCATION_FOR_CHANSPR size_t spr = biosig_channel_get_samples_per_record(hc); spr = SPR / spr; biosig_channel_set_samples_per_record(hc, spr); #else size_t spr = SPR/chanSPR[k]; chanSPR[k] = spr; #endif bpb += spr * 8; /* its always double */ } /*** build Event table for storing segment information pre-allocate memory for even table ***/ numberOfEvents *= 2; // about two events per segment biosig_set_number_of_events(hdr, numberOfEvents); /* check whether all segments have same size */ { char flag = (numberOfChannels > 0); size_t m, POS, pos; for (k=0; k < numberOfChannels; ++k) { pos = Data[k].size(); if (k==0) POS = pos; else flag &= (POS == pos); } for (m=0; flag && (m < Data[(size_t)0].size()); ++m) { for (k=0; k < biosig_get_number_of_channels(hdr); ++k) { pos = Data[k][m].size() * lround(Data[k][m].GetXScale()/Data.GetXScale()); if (k==0) POS = pos; else flag &= (POS == pos); } } if (!flag) { destructHDR(hdr); throw std::runtime_error( "File can't be exported:\n" "Traces have different sizes or no channels found" ); return false; } } size_t N=0; k=0; size_t pos = 0; for (m=0; m < (Data[k].size()); ++m) { if (pos > 0) { uint16_t typ=0x7ffe; uint32_t pos32=pos; uint16_t chn=0; uint32_t dur=0; // set break marker biosig_set_nth_event(hdr, N++, &typ, &pos32, &chn, &dur, NULL, NULL); /* // set annotation const char *Desc = Data[k][m].GetSectionDescription().c_str(); if (Desc != NULL && strlen(Desc)>0) biosig_set_nth_event(hdr, N++, NULL, &pos32, &chn, &dur, NULL, Desc); // TODO */ } pos += Data[k][m].size() * lround(Data[k][m].GetXScale()/Data.GetXScale()); } biosig_set_number_of_events(hdr, N); biosig_set_eventtable_samplerate(hdr, fs); sort_eventtable(hdr); /* convert data into GDF rawdata from */ uint8_t *rawdata = (uint8_t*)malloc(bpb * NRec); size_t bi=0; for (k=0; k < numberOfChannels; ++k) { CHANNEL_TYPE *hc = biosig_get_channel(hdr, k); #ifdef DONOTUSE_DYNAMIC_ALLOCATION_FOR_CHANSPR size_t chSPR = biosig_channel_get_samples_per_record(hc); #else size_t chSPR = chanSPR[k]; #endif size_t m,n,len=0; for (m=0; m < Data[k].size(); ++m) { size_t div = lround(Data[k][m].GetXScale()/Data.GetXScale()); size_t div2 = SPR/div; // TODO: avoid using hdr->SPR // fprintf(stdout,"k,m,div,div2: %i,%i,%i,%i\n",(int)k,(int)m,(int)div,(int)div2); // for (n=0; n < Data[k][m].size(); ++n) { uint64_t val; double d = Data[k][m][n]; #if !defined(__MINGW32__) && !defined(_MSC_VER) && !defined(__APPLE__) val = htole64(*(uint64_t*)&d); #else val = *(uint64_t*)&d; #endif size_t p, spr = (len + n*div) / SPR; for (p=0; p < div2; p++) *(uint64_t*)(rawdata + bi + bpb * spr + p*8) = val; } len += div*Data[k][m].size(); } bi += chSPR*8; } #ifndef DONOTUSE_DYNAMIC_ALLOCATION_FOR_CHANSPR if (chanSPR) free(chanSPR); #endif /****************************** write to file *******************************/ std::string errorMsg("Exception while calling std::exportBiosigFile():\n"); hdr = sopen( fName.c_str(), "w", hdr ); if (serror2(hdr)) { errorMsg += biosig_get_errormsg(hdr); destructHDR(hdr); throw std::runtime_error(errorMsg.c_str()); return false; } ifwrite(rawdata, bpb, NRec, hdr); sclose(hdr); destructHDR(hdr); free(rawdata); #else // #ifndef __LIBBIOSIG2_H__ HDRTYPE* hdr = constructHDR(Data.size(), 0); assert(hdr->NS == Data.size()); /* Initialize all header parameters */ hdr->TYPE = GDF; hdr->VERSION = 3.0; // latest version struct tm t = Data.GetDateTime(); hdr->T0 = tm_time2gdf_time(&t); const char *xunits = Data.GetXUnits().c_str(); #if (BIOSIG_VERSION_MAJOR > 0) uint16_t pdc = PhysDimCode(xunits); #else uint16_t pdc = PhysDimCode((char*)xunits); #endif if ((pdc & 0xffe0) == PhysDimCode("s")) { fprintf(stderr,"Stimfit exportBiosigFile: xunits [%s] has not proper units, assume [ms]\n",Data.GetXUnits().c_str()); pdc = PhysDimCode("ms"); } hdr->SampleRate = 1.0/(PhysDimScale(pdc) * Data.GetXScale()); hdr->SPR = 1; hdr->FLAG.UCAL = 0; hdr->FLAG.OVERFLOWDETECTION = 0; hdr->FILE.COMPRESSION = 0; /* Initialize all channel parameters */ size_t k, m; for (k = 0; k < hdr->NS; ++k) { CHANNEL_TYPE *hc = hdr->CHANNEL+k; hc->PhysMin = -1e9; hc->PhysMax = 1e9; hc->DigMin = -1e9; hc->DigMax = 1e9; hc->Cal = 1.0; hc->Off = 0.0; /* Channel descriptions. */ strncpy(hc->Label, Data[k].GetChannelName().c_str(), MAX_LENGTH_LABEL); #if (BIOSIG_VERSION_MAJOR > 0) hc->PhysDimCode = PhysDimCode(Data[k].GetYUnits().c_str()); #else hc->PhysDimCode = PhysDimCode((char*)Data[k].GetYUnits().c_str()); #endif hc->OnOff = 1; hc->LeadIdCode = 0; hc->TOffset = 0.0; hc->Notch = NAN; hc->LowPass = NAN; hc->HighPass = NAN; hc->Impedance= NAN; hc->SPR = hdr->SPR; hc->GDFTYP = 17; // double // each segment gets one marker, roughly hdr->EVENT.N += Data[k].size(); size_t m,len = 0; for (len=0, m = 0; m < Data[k].size(); ++m) { unsigned div = lround(Data[k][m].GetXScale()/Data.GetXScale()); hc->SPR = lcm(hc->SPR,div); // sampling interval of m-th segment in k-th channel len += div*Data[k][m].size(); } hdr->SPR = lcm(hdr->SPR, hc->SPR); if (k==0) { hdr->NRec = len; } else if ((size_t)hdr->NRec != len) { destructHDR(hdr); throw std::runtime_error("File can't be exported:\n" "No data or traces have different sizes" ); return false; } } hdr->AS.bpb = 0; for (k = 0; k < hdr->NS; ++k) { CHANNEL_TYPE *hc = hdr->CHANNEL+k; hc->SPR = hdr->SPR / hc->SPR; hc->bi = hdr->AS.bpb; hdr->AS.bpb += hc->SPR * 8; /* its always double */ } /*** build Event table for storing segment information ***/ size_t N = hdr->EVENT.N * 2; // about two events per segment hdr->EVENT.POS = (uint32_t*)realloc(hdr->EVENT.POS, N * sizeof(*hdr->EVENT.POS)); hdr->EVENT.DUR = (uint32_t*)realloc(hdr->EVENT.DUR, N * sizeof(*hdr->EVENT.DUR)); hdr->EVENT.TYP = (uint16_t*)realloc(hdr->EVENT.TYP, N * sizeof(*hdr->EVENT.TYP)); hdr->EVENT.CHN = (uint16_t*)realloc(hdr->EVENT.CHN, N * sizeof(*hdr->EVENT.CHN)); #if (BIOSIG_VERSION >= 10500) hdr->EVENT.TimeStamp = (gdf_time*)realloc(hdr->EVENT.TimeStamp, N * sizeof(gdf_time)); #endif /* check whether all segments have same size */ { char flag = (hdr->NS>0); size_t m, POS, pos; for (k=0; k < hdr->NS; ++k) { pos = Data[k].size(); if (k==0) POS = pos; else flag &= (POS == pos); } for (m=0; flag && (m < Data[(size_t)0].size()); ++m) { for (k=0; k < hdr->NS; ++k) { pos = Data[k][m].size() * lround(Data[k][m].GetXScale()/Data.GetXScale()); if (k==0) POS = pos; else flag &= (POS == pos); } } if (!flag) { destructHDR(hdr); throw std::runtime_error( "File can't be exported:\n" "Traces have different sizes or no channels found" ); return false; } } N=0; k=0; size_t pos = 0; for (m=0; m < (Data[k].size()); ++m) { if (pos > 0) { // start of new segment after break hdr->EVENT.POS[N] = pos; hdr->EVENT.TYP[N] = 0x7ffe; hdr->EVENT.CHN[N] = 0; hdr->EVENT.DUR[N] = 0; N++; } #if 0 // event description hdr->EVENT.POS[N] = pos; FreeTextEvent(hdr, N, "myevent"); //FreeTextEvent(hdr, N, Data[k][m].GetSectionDescription().c_str()); // TODO hdr->EVENT.CHN[N] = k; hdr->EVENT.DUR[N] = 0; N++; #endif pos += Data[k][m].size() * lround(Data[k][m].GetXScale()/Data.GetXScale()); } hdr->EVENT.N = N; hdr->EVENT.SampleRate = hdr->SampleRate; sort_eventtable(hdr); /* convert data into GDF rawdata from */ hdr->AS.rawdata = (uint8_t*)realloc(hdr->AS.rawdata, hdr->AS.bpb*hdr->NRec); for (k=0; k < hdr->NS; ++k) { CHANNEL_TYPE *hc = hdr->CHANNEL+k; size_t m,n,len=0; for (m=0; m < Data[k].size(); ++m) { size_t div = lround(Data[k][m].GetXScale()/Data.GetXScale()); size_t div2 = hdr->SPR/div; // fprintf(stdout,"k,m,div,div2: %i,%i,%i,%i\n",(int)k,(int)m,(int)div,(int)div2); // for (n=0; n < Data[k][m].size(); ++n) { uint64_t val; double d = Data[k][m][n]; #if !defined(__MINGW32__) && !defined(_MSC_VER) && !defined(__APPLE__) val = htole64(*(uint64_t*)&d); #else val = *(uint64_t*)&d; #endif size_t p, spr = (len + n*div) / hdr->SPR; for (p=0; p < div2; p++) *(uint64_t*)(hdr->AS.rawdata + hc->bi + hdr->AS.bpb * spr + p*8) = val; } len += div*Data[k][m].size(); } } /****************************** write to file *******************************/ std::string errorMsg("Exception while calling std::exportBiosigFile():\n"); hdr = sopen( fName.c_str(), "w", hdr ); #if (BIOSIG_VERSION > 10400) if (serror2(hdr)) { errorMsg += hdr->AS.B4C_ERRMSG; #else if (serror()) { errorMsg += B4C_ERRMSG; #endif destructHDR(hdr); throw std::runtime_error(errorMsg.c_str()); return false; } ifwrite(hdr->AS.rawdata, hdr->AS.bpb, hdr->NRec, hdr); sclose(hdr); destructHDR(hdr); #endif return true; } stimfit-0.13.13/src/libstfio/abf/0000775000175000017500000000000012275713011013472 500000000000000stimfit-0.13.13/src/libstfio/abf/axon/0000775000175000017500000000000012275713011014437 500000000000000stimfit-0.13.13/src/libstfio/abf/axon/AxAtfFio32/0000775000175000017500000000000012275713011016245 500000000000000stimfit-0.13.13/src/libstfio/abf/axon/AxAtfFio32/atfutil.h0000775000175000017500000000204612275677732020036 00000000000000/****************************************************************************\ * * * Written 1990 - 1995 by AXON Instruments Inc. * * * * This file is not protected by copyright. You are free to use, modify * * and copy the code in this file. * * * \****************************************************************************/ // // HEADER: ATFUTIL.H Prototypes for functions in ATFUTIL.CPP // AUTHOR: BHI Feb 1995 #ifndef __ATFUTIL_H__ #define __ATFUTIL_H__ #if !defined(_WINDOWS) || defined(__MINGW32__) int LoadString( HINSTANCE hInstance, int nErrorNum, char *sTxtBuf, UINT uMaxLen); #endif extern HINSTANCE g_hInstance; #if defined(_WINDOWS) && !defined(__MINGW32__) #include "./../Common/resource.h" #endif #endif stimfit-0.13.13/src/libstfio/abf/axon/AxAtfFio32/fileio2.cpp0000775000175000017500000006163612275677732020264 00000000000000//*********************************************************************************************** // // Written 1990 - 1996 by AXON Instruments Inc. // // This file is not protected by copyright. You are free to use, modify // and copy the code in this file. // //*********************************************************************************************** // // MODULE: FILEIO.CPP // PURPOSE: Low level routines for buffered file I/O. // // An ANSI C compiler should be used for compilation. // (e.g. CL -c AXATFFIO32.CPP) // #include "../Common/wincpp.hpp" #include "atfintl.h" #include "axatffio32.h" #include #if !defined(_WINDOWS) || defined(__MINGW32__) || defined(__STF__) #define max(a,b) (((a) > (b)) ? (a) : (b)) #define min(a,b) (((a) < (b)) ? (a) : (b)) #endif #if defined(_WINDOWS) //=============================================================================================== // FUNCTION: _GetRootDir // PURPOSE: Extracts the root directory of a full or partial path. // FIXFIX: Fix this to cope with UNC names when GetDiskFreeSpace does. // static BOOL _GetRootDir(LPCSTR pszFileName, LPSTR pszRoot, UINT uRootLen) { // Build the path to the drive's root directory. char szRootDir[_MAX_DRIVE+2]; char szFullPath[_MAX_PATH], *pszTitle; GetFullPathNameA(pszFileName, sizeof(szFullPath), szFullPath, &pszTitle); if (!isalpha(szFullPath[0])) return FALSE; sprintf(szRootDir, "%c:\\", szFullPath[0]); strncpy(pszRoot, szRootDir, uRootLen-1); pszRoot[uRootLen-1] = '\0'; return TRUE; } #endif //=============================================================================================== // FUNCTION: _AllocReadWriteBuffer // PURPOSE: Allocate read/write buffers for this file // static BOOL AllocReadWriteBuffer(ATF_FILEINFO *pATF, DWORD dwDesiredAccess) { WPTRASSERT(pATF); // init all settings: pATF->lBufSize = 0L; pATF->lPos = 0L; pATF->lBufReadLimit = 0L; pATF->pszBuf = NULL; pATF->bRead = TRUE; // if querying only: if (dwDesiredAccess == 0) return TRUE; #if defined(_WINDOWS) char szRootDir[_MAX_DRIVE+2]; if (_GetRootDir(pATF->pszFileName, szRootDir, sizeof(szRootDir))) { DWORD dwSectorsPerCluster = 0; DWORD dwBytesPerSector = 0; DWORD dwNumberOfFreeClusters = 0; DWORD dwTotalNumberOfClusters = 0; GetDiskFreeSpaceA(szRootDir, &dwSectorsPerCluster, &dwBytesPerSector, &dwNumberOfFreeClusters, &dwTotalNumberOfClusters); pATF->lBufSize = min((dwSectorsPerCluster * dwBytesPerSector), (long)ATF_MAX_BUFFER_SIZE); ASSERT(pATF->lBufSize > 0); } else pATF->lBufSize = ATF_MAX_BUFFER_SIZE; #else pATF->lBufSize = ATF_MAX_BUFFER_SIZE; #endif // Allocate one more than the size for zero termination. pATF->pszBuf = (char *)calloc(pATF->lBufSize+1, sizeof(char)); if (pATF->pszBuf == NULL) { pATF->lBufSize = 0L; return FALSE; } pATF->lPos = pATF->lBufSize; // empty read buffer pATF->lBufReadLimit = pATF->lBufSize; return TRUE; } //=============================================================================================== // FUNCTION: _FreeReadWriteBuffer // PURPOSE: Free the read/write buffers used by this file; flushes write buffer to disk if necessary // static BOOL FreeReadWriteBuffer(ATF_FILEINFO *pATF) { WPTRASSERT(pATF); DWORD dwBytesWritten = 0; if (!pATF->bRead && pATF->lPos != 0L) #if defined(_WINDOWS) WriteFile(pATF->hFile, pATF->pszBuf, pATF->lPos, &dwBytesWritten, NULL); #else c_WriteFile((FILE*)pATF->hFile, pATF->pszBuf, pATF->lPos, &dwBytesWritten, NULL); #endif if (pATF->pszBuf) free(pATF->pszBuf); pATF->pszBuf = NULL; pATF->lBufSize = 0L; pATF->lPos = 0L; pATF->lBufReadLimit = 0L; pATF->bRead = TRUE; return TRUE; } //=============================================================================================== // FUNCTION: _CreateFileBuf // PURPOSE: Buffered version of CreateFile - creates appropriate buffers // PARAMETERS: // pATF Pointer to ATF_FILEINFO structure containing ATF state information (just filename at this point!) // ... CreateFile parms which we ignore (missing lpFileName - derived from pATF), except // for dwDesiredAccess. If GENERIC_READ or GENERIC_WRITE, we allocate a buffer // RETURNS: Handle of file; INVALID_HANDLE_VALUE if failure; HANDLE CreateFileBuf(ATF_FILEINFO *pATF, DWORD dwDesiredAccess, DWORD dwShareMode, LPSECURITY_ATTRIBUTES lpSecurityAttributes, DWORD dwCreationDisposition, DWORD dwFlagsAndAttributes, HANDLE hTemplateFile ) { #if defined(_WINDOWS) pATF->hFile = CreateFileA(pATF->pszFileName, dwDesiredAccess, dwShareMode, lpSecurityAttributes, dwCreationDisposition, dwFlagsAndAttributes, hTemplateFile); #else pATF->hFile = c_CreateFile(pATF->pszFileName, dwDesiredAccess, dwShareMode, lpSecurityAttributes, dwCreationDisposition, dwFlagsAndAttributes, hTemplateFile); #endif if (pATF->hFile != INVALID_HANDLE_VALUE) { // allocate buffer, initialize flags: if (!AllocReadWriteBuffer(pATF, dwDesiredAccess)) { #if defined(_WINDOWS) CloseHandle(pATF->hFile); #else c_CloseHandle((FILE*)pATF->hFile); #endif pATF->hFile = INVALID_HANDLE_VALUE; } } return pATF->hFile; } //=============================================================================================== // FUNCTION: _CloseHandleBuf // PURPOSE: Buffered version of CloseHandle - flushes and cleans up buffers // PARAMETERS: // pATF Pointer to ATF_FILEINFO structure containing ATF state information (just filename at this point!) // RETURNS: TRUE on success; FALSE on failure BOOL CloseHandleBuf(ATF_FILEINFO *pATF) { BOOL bReturn = FreeReadWriteBuffer(pATF); #if defined(_WINDOWS) return CloseHandle(pATF->hFile) && bReturn; #else return c_CloseHandle((FILE*)pATF->hFile) && bReturn; #endif } //=============================================================================================== // FUNCTION: WriteFileBuf // PURPOSE: Buffered version of WriteFile // PARAMETERS: // pATF Pointer to ATF_FILEINFO structure containing ATF state information // pvBuffer Buffer containing data to be written // dwBytes Number of bytes to write // pdwWritten Pointer to DWORD used to catch the number of bytes written to the file // lpOverlapped Pointer to overlapped structure used to communicate requests of overlapped i/o (may be NULL) // RETURNS: // TRUE on success // FALSE on failure BOOL WriteFileBuf(ATF_FILEINFO *pATF, LPCVOID pvBuffer, DWORD dwBytes, DWORD *pdwWritten, LPOVERLAPPED lpOverlapped) { WPTRASSERT(pATF); long lBufSize = pATF->lBufSize; char *pszWriteBuf = pATF->pszBuf; // perform write if buffer size is 0: if (lBufSize == 0L) #if defined(_WINDOWS) return WriteFile(pATF->hFile, pvBuffer, dwBytes, pdwWritten, lpOverlapped); #else return c_WriteFile((FILE*)pATF->hFile, pvBuffer, dwBytes, pdwWritten, lpOverlapped); #endif // switch to write mode: if (pATF->bRead) { pATF->bRead = FALSE; pATF->lPos = 0; } // determine free size left in buffer: long lFreeSize = lBufSize - pATF->lPos; ASSERT(lFreeSize > 0L); // move up to a single buffer long lMoveSize = min((DWORD)lFreeSize, dwBytes); memcpy(pszWriteBuf + pATF->lPos, pvBuffer, lMoveSize); pATF->lPos += lMoveSize; // case 1: doesn't fill buffer if (pATF->lPos < lBufSize) { if (pdwWritten) *pdwWritten = dwBytes; return TRUE; } // write initial buffer - results handled in case 2 and 3: DWORD dwBytesWritten = 0; #if defined(_WINDOWS) BOOL bReturn = WriteFile(pATF->hFile, pszWriteBuf, lBufSize, &dwBytesWritten, lpOverlapped); #else BOOL bReturn = c_WriteFile((FILE*)pATF->hFile, pszWriteBuf, lBufSize, &dwBytesWritten, lpOverlapped); #endif // case 2: fills buffer, less than one buffer overflow (write one, move the rest) if (dwBytes - (DWORD)lMoveSize < (DWORD)lBufSize) { if (dwBytes - lMoveSize > 0L) memcpy(pszWriteBuf, ((BYTE *)pvBuffer + lMoveSize), dwBytes-lMoveSize); pATF->lPos = dwBytes - lMoveSize; if (pdwWritten) *pdwWritten = dwBytes; return bReturn; } // case 3: multiple buffer's worth (write mem buffer, write the remainder, reset internals) if (bReturn) { #if defined(_WINDOWS) bReturn = WriteFile(pATF->hFile, ((BYTE *)pvBuffer + lMoveSize), dwBytes - lMoveSize, &dwBytesWritten, lpOverlapped); #else bReturn = c_WriteFile((FILE*)pATF->hFile, ((BYTE *)pvBuffer + lMoveSize), dwBytes - lMoveSize, &dwBytesWritten, lpOverlapped); #endif if (pdwWritten) *pdwWritten = dwBytes; } else if (pdwWritten) *pdwWritten = dwBytesWritten; pATF->lPos = 0L; return bReturn; } //=============================================================================================== // FUNCTION: ReadFileBuf // PURPOSE: Buffered version of ReadFile // PARAMETERS: // pATF Pointer to ATF_FILEINFO structure containing ATF state information // pvBuffer Buffer to contain dwBytes read from file // dwBytes Number of bytes to read // pdwRead Pointer to DWORD used to catch the number of bytes written to the file // lpOverlapped Pointer to overlapped structure used to communicate requests of overlapped i/o (may be NULL) // RETURNS: // TRUE on success (*pdwRead == 0 -> EOF) // FALSE on failure (error condition) BOOL ReadFileBuf(ATF_FILEINFO *pATF, LPVOID pvBuffer, DWORD dwBytes, DWORD *pdwRead, LPOVERLAPPED lpOverlapped) { WPTRASSERT(pATF); // perform read if buffer size is 0: if (pATF->lBufSize == 0L) #if defined(_WINDOWS) return ReadFile(pATF->hFile, pvBuffer, dwBytes, pdwRead, lpOverlapped); #else return c_ReadFile((FILE*)pATF->hFile, pvBuffer, dwBytes, pdwRead, lpOverlapped); #endif // switch to read mode: if (!pATF->bRead) { DWORD dwBytesWritten; // commit current cache: if (pATF->lPos > 0L) #if defined(_WINDOWS) if (!WriteFile(pATF->hFile, pATF->pszBuf, pATF->lPos, &dwBytesWritten, NULL)) #else if (!c_WriteFile((FILE*)pATF->hFile, pATF->pszBuf, pATF->lPos, &dwBytesWritten, NULL)) #endif return FALSE; pATF->bRead = TRUE; pATF->lPos = pATF->lBufSize; pATF->lBufReadLimit = pATF->lBufSize; } DWORD dwBytesRead; BOOL bReturn; long lBufSize = pATF->lBufSize; char *pszReadBuf = pATF->pszBuf; // determine amount left in buffer: long lBytesInBuf = pATF->lBufReadLimit - pATF->lPos; ASSERT(lBytesInBuf >= 0L); // move up to a single buffer long lMoveSize = min((DWORD)lBytesInBuf, dwBytes); if (lMoveSize > 0L) { memcpy(pvBuffer, pszReadBuf + pATF->lPos, lMoveSize); pATF->lPos += lMoveSize; } // case 1: request doesn't run past the end of the buffer if (pATF->lPos < pATF->lBufReadLimit) { if (pdwRead) *pdwRead = dwBytes; return TRUE; } // case 2: request runs past end of buffer, and wants more than (or =) another buffer's worth: // (perform a full read; leaves buffer empty) if (dwBytes - (DWORD)lMoveSize >= (DWORD)pATF->lBufReadLimit) { #if defined(_WINDOWS) bReturn = ReadFile(pATF->hFile, ((BYTE *)pvBuffer + lMoveSize), dwBytes - lMoveSize, &dwBytesRead, lpOverlapped); #else bReturn = c_ReadFile((FILE*)pATF->hFile, ((BYTE *)pvBuffer + lMoveSize), dwBytes - lMoveSize, &dwBytesRead, lpOverlapped); #endif if (pdwRead) *pdwRead = lMoveSize + dwBytesRead; pATF->lPos = lBufSize; pATF->lBufReadLimit = lBufSize; return bReturn; } // case 3: request runs past end of buffer, and wants less than another buffer's worth: // (read in another buffer, copy wanted portion, advance lPos) #if defined(_WINDOWS) bReturn = ReadFile(pATF->hFile, pszReadBuf, lBufSize, &dwBytesRead, lpOverlapped); #else bReturn = c_ReadFile((FILE*)pATF->hFile, pszReadBuf, lBufSize, &dwBytesRead, lpOverlapped); #endif if (bReturn) { pATF->lBufReadLimit = dwBytesRead; int nMoveAmount = min((int)(dwBytes - lMoveSize), pATF->lBufReadLimit); memcpy((BYTE *)pvBuffer + lMoveSize, pszReadBuf, nMoveAmount); if (pdwRead) *pdwRead = lMoveSize + nMoveAmount; pATF->lPos = nMoveAmount; } else { if (pdwRead) *pdwRead = lMoveSize; pATF->lPos = lBufSize; } return bReturn; } //=============================================================================================== // FUNCTION: _SetFilePointerBuf // PURPOSE: Buffered version of SetFilePointer // PARAMETERS: // pATF Pointer to ATF_FILEINFO structure containing ATF state information // lToMove Amount to move from position specified in dwMoveMethod; negative means move backwards // plDistHigh High order word of 64-bit distance to move. Should be NULL // dwMoveMethod Method to move: FILE_BEGIN - move lToMove bytes from beginning of file // FILE_CURRENT - move lToMove bytes from current position // FILE_END - move lToMove bytes from end of file // RETURNS: Offset of new position from beginning of file (0xFFFFFFFF if failure) DWORD SetFilePointerBuf(ATF_FILEINFO *pATF, long lToMove, PLONG plDistHigh, DWORD dwMoveMethod) { WPTRASSERT(pATF); DWORD dwBytesWritten; // move real file position to lPos: if (pATF->bRead) { #if defined(_WINDOWS) if (SetFilePointer(pATF->hFile, pATF->lPos - pATF->lBufReadLimit, NULL, FILE_CURRENT) == 0xFFFFFFFF) #else if (c_SetFilePointer((FILE*)pATF->hFile, pATF->lPos - pATF->lBufReadLimit, NULL, FILE_CURRENT) == 0xFFFFFFFF) #endif return 0xFFFFFFFF; } // flush write buffer if non-empty - this positions the file pointer appropriately. else { if (pATF->lPos != 0L) { #if defined(_WINDOWS) if (!WriteFile(pATF->hFile, pATF->pszBuf, pATF->lPos, &dwBytesWritten, NULL)) #else if (!c_WriteFile((FILE*)pATF->hFile, pATF->pszBuf, pATF->lPos, &dwBytesWritten, NULL)) #endif return 0xFFFFFFFF; } } pATF->bRead = TRUE; pATF->lPos = pATF->lBufSize; pATF->lBufReadLimit = pATF->lBufSize; #if defined(_WINDOWS) return SetFilePointer(pATF->hFile, lToMove, plDistHigh, dwMoveMethod); #else return c_SetFilePointer((FILE*)pATF->hFile, lToMove, plDistHigh, dwMoveMethod); #endif } //=============================================================================================== // FUNCTION: SetLineTerminator // PURPOSE: Sets the line terminator to use on this file. // NOTES: This call assumes that if the file only contains \r characters as // line terminators, that there will be at least one '\r' in the first read of the file. // This should be reasonably safe as the first line of an ATF file should be "ATF\t1.0 \r". // inline char GetLineTerminator(LPSTR psz) { return strchr(psz, '\n') ? '\n' : '\r'; } //=============================================================================================== // FUNCTION: getsUnBuf // PURPOSE: Unbuffered version of gets // RETURNS: ZERO on success // GETS_EOF on EOF // GETS_ERROR on error // static int getsUnBuf(ATF_FILEINFO *pATF, LPSTR pszString, DWORD dwBufSize) { WPTRASSERT(pATF); ASSERT(dwBufSize > 1L); // Must be at least one character and a '\0'; DWORD dwToRead = dwBufSize; // Zero terminate the buffer at the last element and reduce the length count // to be sure that we are returning a zero term8inated string. dwToRead--; pszString[dwToRead] = '\0'; LPSTR pszThisRead = pszString; while (dwToRead > 0L) { // Do the read. DWORD dwBytesToRead = min(MAX_READ_SIZE, dwToRead); DWORD dwBytesRead = 0L; if (!ReadFileBuf(pATF, pszThisRead, dwBytesToRead, &dwBytesRead, NULL)) return GETS_ERROR; if (dwBytesRead == 0L) return GETS_EOF; // Zero terminate the read block after the last byte read. // No bounds problem because we predecremented the string size // up front to allow for a trailing '\0'. pszThisRead[dwBytesRead] = '\0'; // If the line terminator has not been set, set it now. if (pATF->cLineTerm == '\0') pATF->cLineTerm = GetLineTerminator(pszString); // look for a line terminator. LPSTR pszTerm = strchr(pszThisRead, pATF->cLineTerm); if (pszTerm) { // Zero out the terminator and step on past it. *pszTerm++ = '\0'; // Set the count of bytes to back up in the file. int nCount = (pszThisRead + dwBytesRead) - pszTerm; // adjust file position if we find a line terminator before the end of the buffer we have just read; if (nCount < 0) SetFilePointerBuf(pATF, nCount, NULL, FILE_CURRENT); break; } dwToRead -= dwBytesRead; pszThisRead += dwBytesRead; } // Take out the last character if it is '\r'. // (present if \r\n pairs terminate lines) int l = strlen(pszThisRead); if (l && (pszThisRead[l-1]=='\r')) { --l; pszThisRead[l] = '\0'; } return (DWORD(l) < dwBufSize-1) ? 0 : GETS_NOEOL; } //=============================================================================================== // FUNCTION: getsBuf // PURPOSE: Buffered version of gets -- line terminated are removed from the returned string. // RETURNS: ZERO on success // GETS_EOF on EOF // GETS_ERROR on error int getsBuf(ATF_FILEINFO *pATF, LPSTR pszString, DWORD dwBufSize) { WPTRASSERT(pATF); // ******************************************************************************* // check for unbuffered status: if (pATF->lBufSize == 0) return getsUnBuf(pATF, pszString, dwBufSize); DWORD dwToRead = dwBufSize; // ******************************************************************************* // switch to read mode, if necessary: if (!pATF->bRead) { DWORD dwBytesWritten; // commit current cache: if (pATF->lPos > 0) #if defined(_WINDOWS) if (!WriteFile(pATF->hFile, pATF->pszBuf, pATF->lPos, &dwBytesWritten, NULL)) #else if (!c_WriteFile((FILE*)pATF->hFile, pATF->pszBuf, pATF->lPos, &dwBytesWritten, NULL)) #endif return GETS_ERROR; pATF->bRead = TRUE; pATF->lPos = pATF->lBufSize; pATF->lBufReadLimit = pATF->lBufSize; } // ******************************************************************************* // process: dwToRead--; // for terminating 0 pszString[dwToRead] = '\0'; LPSTR pszReturnBuf = pszString; LPSTR pszReadBuf = pATF->pszBuf; while (dwToRead > 0L) { // determine amount left in buffer: long lBytesInBuf = pATF->lBufReadLimit - pATF->lPos; ASSERT(lBytesInBuf >= 0L); // move up to a single buffer long lMoveSize = min(lBytesInBuf, (long)dwToRead); if (lMoveSize > 0) { // look for a line terminator LPSTR pszStart = pszReadBuf + pATF->lPos; LPSTR pszTerm = strchr(pszStart, pATF->cLineTerm); // If found and inside the read range terminate the string and the read. if (pszTerm && (pszTerm < pszStart+lMoveSize)) { *pszTerm = '\0'; lMoveSize = pszTerm - pszStart + 1; // When the counter gets decremented below, the loop will terminate. dwToRead = lMoveSize; } // Copy the data into the return buffer. strncpy(pszReturnBuf, pszStart, lMoveSize); pszReturnBuf[lMoveSize] = '\0'; // Advance the buffer position pATF->lPos += lMoveSize; dwToRead -= lMoveSize; pszReturnBuf += lMoveSize; } else { // read another buffer if done with the current one: if (dwToRead > 0) // ie - we arrived here because lBytesInBuf == 0 { DWORD dwBytesRead; #if defined(_WINDOWS) if (!ReadFile(pATF->hFile, pszReadBuf, pATF->lBufSize, &dwBytesRead, NULL)) #else if (!c_ReadFile((FILE*)pATF->hFile, pszReadBuf, pATF->lBufSize, &dwBytesRead, NULL)) #endif return GETS_ERROR; if (dwBytesRead == 0) return GETS_EOF; if (dwBytesRead != (DWORD)pATF->lBufSize) pATF->lBufReadLimit = dwBytesRead; else pATF->lBufReadLimit = pATF->lBufSize; pATF->lPos = 0; // Zero terminate the read block after the last byte read. // No bounds problem because we allocated the I/O buffer to be one byte // more than pATF->lBufSize. pszReadBuf[dwBytesRead] = '\0'; // If the line terminator has not been set, set it now. if (pATF->cLineTerm == '\0') pATF->cLineTerm = GetLineTerminator(pszReadBuf); } } } // Take out the last character if it is '\r'. // (present if \r\n pairs terminate lines) int l = strlen(pszString); if (l && (pszString[l-1]=='\r')) { l--; pszString[l] = '\0'; } return (DWORD(l) < dwBufSize-1) ? 0 : GETS_NOEOL; } //=============================================================================================== // FUNCTION: putsBuf // PURPOSE: Buffered version of puts. // RETURNS: ZERO on success // GETS_EOF on EOF // GETS_ERROR on error int putsBuf(ATF_FILEINFO *pATF, LPCSTR pszString) { WPTRASSERT(pATF); DWORD dwBytes = strlen(pszString); DWORD dwBytesWritten; // perform write if buffer size is 0: if (pATF->lBufSize == 0L) #if defined(_WINDOWS) return WriteFile(pATF->hFile, pszString, dwBytes, &dwBytesWritten, NULL); #else return c_WriteFile((FILE*)pATF->hFile, pszString, dwBytes, &dwBytesWritten, NULL); #endif // switch to write mode: if (pATF->bRead) { pATF->bRead = FALSE; pATF->lPos = 0; } long lBufSize = pATF->lBufSize; char *pszWriteBuf = pATF->pszBuf; // determine free size left in buffer: long lFreeSize = lBufSize - pATF->lPos; ASSERT(lFreeSize > 0L); // move up to a single buffer long lMoveSize = min((DWORD)lFreeSize, dwBytes); memcpy(pszWriteBuf + pATF->lPos, pszString, lMoveSize); pATF->lPos += lMoveSize; // case 1: doesn't fill buffer if (pATF->lPos < lBufSize) return TRUE; // write initial buffer - results handled in case 2 and 3: #if defined(_WINDOWS) BOOL bReturn = WriteFile(pATF->hFile, pszWriteBuf, lBufSize, &dwBytesWritten, NULL); #else BOOL bReturn = c_WriteFile((FILE*)pATF->hFile, pszWriteBuf, lBufSize, &dwBytesWritten, NULL); #endif // case 2: fills buffer, less than one buffer overflow (write one, move the rest) if (dwBytes - (DWORD)lMoveSize < (DWORD)lBufSize) { pATF->lPos = dwBytes - lMoveSize; if (pATF->lPos > 0L) memcpy(pszWriteBuf, pszString + lMoveSize, pATF->lPos); return bReturn; } // case 3: multiple buffer's worth (write mem buffer, write the remainder, reset internals) if (bReturn) #if defined(_WINDOWS) bReturn = WriteFile(pATF->hFile, pszString + lMoveSize, dwBytes - lMoveSize, &dwBytesWritten, NULL); #else bReturn = c_WriteFile((FILE*)pATF->hFile, pszString + lMoveSize, dwBytes - lMoveSize, &dwBytesWritten, NULL); #endif pATF->lPos = 0L; return bReturn; } stimfit-0.13.13/src/libstfio/abf/axon/AxAtfFio32/atfintl.h0000775000175000017500000000667512275677732020043 00000000000000//*********************************************************************************************** // // Written 1990 - 1996 by AXON Instruments Inc. // // This file is not protected by copyright. You are free to use, modify // and copy the code in this file. // //*********************************************************************************************** // // HEADER: ATFINTL.H // PURPOSE: Internal header file for the ATF file I/O routines. // enum eFILE_STATE { eCLOSED, eOPENED, eHEADERED, eDATAREAD, eDATAWRITTEN, eDATAAPPENDED, }; struct ATF_FILEINFO { HANDLE hFile; eFILE_STATE eState; BOOL bWriting; UINT uFlags; int nHeaders; long lFilePos; int nColumns; double dFileVersion; long lTitlesPtr; long lDataPtr; BOOL bDataOnLine; char szSeparator[2]; char ** apszFileColTitles; char ** apszFileColUnits; char * pszIOBuffer; char * pszFileName; int nIOBufferSize; // buffering: long lBufSize; char * pszBuf; // = lBufSize means no info is buffered long lPos; // current position in buffer - 0 means no info is buffered BOOL bRead; // TRUE = reading; FALSE = writing long lBufReadLimit; // actual amount read in when a full buffer is not available char cLineTerm; // The character that will terminate each line. }; typedef ATF_FILEINFO *PATF_FILEINFO; //----------------------------------------------------------------------------------------------- // Macros and functions to deal with returning error return codes through a pointer if given. #define ERRORRETURN(p, e) return ErrorReturn(p, e); inline BOOL ErrorReturn(int *pnError, int nErrorNum) { if (pnError) *pnError = nErrorNum; return FALSE; } //----------------------------------------------------------------------------------------------- #define MAX_READ_SIZE 512 #define GETS_OK 0 // Success! #define GETS_EOF 1 // End of file reached. #define GETS_ERROR 2 // I/O error #define GETS_NOEOL 3 // No end of line found. //----------------------------------------------------------------------------------------------- // declaration of low-level file I/O functions. HANDLE CreateFileBuf(ATF_FILEINFO *pATF, DWORD dwDesiredAccess, DWORD dwShareMode, LPSECURITY_ATTRIBUTES lpSecurityAttributes, DWORD dwCreationDisposition, DWORD dwFlagsAndAttributes, HANDLE hTemplateFile ); BOOL CloseHandleBuf(ATF_FILEINFO *pATF); BOOL WriteFileBuf(ATF_FILEINFO *pATF, LPCVOID pvBuffer, DWORD dwBytes, DWORD *pdwWritten, LPOVERLAPPED lpOverlapped); BOOL ReadFileBuf(ATF_FILEINFO *pATF, LPVOID pvBuffer, DWORD dwBytes, DWORD *pdwRead, LPOVERLAPPED lpOverlapped); DWORD SetFilePointerBuf(ATF_FILEINFO *pATF, long lToMove, PLONG plDistHigh, DWORD dwMoveMethod); int getsBuf(ATF_FILEINFO *pATF, LPSTR pszString, DWORD dwToRead); int putsBuf(ATF_FILEINFO *pATF, LPCSTR pszString); stimfit-0.13.13/src/libstfio/abf/axon/AxAtfFio32/axatffio32.cpp0000775000175000017500000015332012275677732020671 00000000000000//*********************************************************************************************** // // Written 1990 - 1997 by AXON Instruments Inc. // // This file is not protected by copyright. You are free to use, modify // and copy the code in this file. // //*********************************************************************************************** // // MODULE: AXATFFIO32.CPP // PURPOSE: Contains routines for reading and writing text files in the ATF format. // // An ANSI C compiler should be used for compilation. // Compile with the large memory model option. // (e.g. CL -c -AL AXATFFIO32.CPP) // // NOTE=NOTE=NOTE=NOTE=NOTE=NOTE=NOTE=NOTE=NOTE=NOTE=NOTE=NOTE=NOTE=NOTE // For consistency and code reuse, the DLL version of this module uses // AxonValidation.lib to perform float/double formatting. // NOTE=NOTE=NOTE=NOTE=NOTE=NOTE=NOTE=NOTE=NOTE=NOTE=NOTE=NOTE=NOTE=NOTE #include "axatffio32.h" #include "atfutil.h" #include "atfintl.h" #include "../Common/axodebug.h" #define ATF_FILE_ID "ATF" #define PAF_FILE_ID "PAF" #define FILE_ID_LEN 3 #define PREVIOUS_PAF_VERSION 5.0F #define ATF_AVCOLUMNSIZE 50 // average number of chars per column #define ATF_MINBUFSIZE 1024 // minimum size for the pszIOBuffer #define ATF_DBL_SIG_DIGITS 12 #define ATF_FLT_SIG_DIGITS 6 // #define ATF_DBL_STR_LEN ATF_DBL_SIG_DIGITS + 7 // 1 for sign, 1 for decimal, // #define ATF_FLT_STR_LEN ATF_FLT_SIG_DIGITS + 7 // 2 for '+E' of exponential notation, 3 for exponent #define ATF_DBL_STR_LEN VAL_EXTERNBUFSIZE // for use with axovdate #define ATF_FLT_STR_LEN VAL_EXTERNBUFSIZE // // Set the maximum number of files that can be open simultaneously. // This can be overridden from the compiler command line. // #define ATF_MAXFILES 64 static PATF_FILEINFO g_FileDescriptor[ATF_MAXFILES]; // // If the file is opened in BINARY mode, CR/LF pairs are NOT translated to LFs // on reading, and LFs are NOT translated to CR/LF on writing. // static const char s_szEndOfLine[] = "\r\n"; static const char s_szWhitespace[] = "\t\r\n ,"; static const char s_szWhiteNoSpace[] = "\t\r\n,"; static const char s_szDelimiter[] = "\t,"; static const char s_szLineTerm[] = "\r\n"; // HINSTANCE g_hInstance = NULL; #define ENDOFFILE 0x1A // End-of-file character static BOOL ReadDataRecord(ATF_FILEINFO *pATF, int *pnError); //=============================================================================================== // FUNCTION: ATF_Initialize() // PARAMETERS: // hInstance - Instance handle from which resources will be taken. // RETURNS: // BOOL - TRUE = Initialization was successful. // // PURPOSE: This function should be called before any of the other API functions. // NOTES: This function is not exported as it is called from the DLL startup code. If the // API is bound into an executable rather than a DLL it will need to be called // explicitly. // BOOL WINAPI ATF_Initialize(HINSTANCE hDLL) { // Protect against multiple calls. if (g_hInstance != NULL) return TRUE; // Save the DLL instance handle. g_hInstance = hDLL; for (int i=0; iszSeparator[0] = s_szDelimiter[0]; *ppATF = g_FileDescriptor[nFile] = pATF; *pnFile = nFile; return TRUE; } //----------------------------------------------------------------------------------------------- // FUNCTION: GetFileDescriptor // PURPOSE: Retreive an existing file descriptor. // static BOOL GetFileDescriptor(ATF_FILEINFO **ppATF, int nFile, int *pnError) { WPTRASSERT(ppATF); // Check that index is within range. if ((nFile < 0) || (nFile >= ATF_MAXFILES)) ERRORRETURN(pnError, ATF_ERROR_BADFILENUM); // Get a pointer to the descriptor. ATF_FILEINFO *pATF = g_FileDescriptor[nFile]; if (pATF == NULL) ERRORRETURN(pnError, ATF_ERROR_BADSTATE); // Return the descriptor. *ppATF = pATF; return TRUE; } //=============================================================================================== // FUNCTION: AllocIOBuffer // PURPOSE: Allocate an IOBuffer for this file. // static BOOL AllocIOBuffer(ATF_FILEINFO *pATF) { WPTRASSERT(pATF); pATF->nIOBufferSize = pATF->nColumns * ATF_AVCOLUMNSIZE; if (pATF->nIOBufferSize < ATF_MINBUFSIZE) pATF->nIOBufferSize = ATF_MINBUFSIZE; pATF->pszIOBuffer = (char *)calloc(pATF->nIOBufferSize, sizeof(char)); if (pATF->pszIOBuffer == NULL) { pATF->nIOBufferSize = 0; return FALSE; } return TRUE; } //=============================================================================================== // FUNCTION: FreeIOBuffer // PURPOSE: Free the IO buffer used by this file. // static void FreeIOBuffer(ATF_FILEINFO *pATF) { WPTRASSERT(pATF); if (pATF->pszIOBuffer != NULL) free(pATF->pszIOBuffer); pATF->pszIOBuffer = NULL; pATF->nIOBufferSize = 0; } //============================================================================================== // FUNCTION: strncpyz // PURPOSE: Does a strncpy but guarantees that a terminating zero is placed on the // destination string. // RETURNS: The destination buffer. // static LPSTR strncpyz(LPSTR pszDest, LPCSTR pszSrce, UINT uBufSize) { ARRAYASSERT(pszDest, uBufSize); #if 0 LPSZASSERT(pszSrce); #endif strncpy(pszDest, pszSrce, uBufSize-1); pszDest[uBufSize-1] = '\0'; return pszDest; } //=============================================================================================== // FUNCTION: GetNumber // PURPOSE: Parse the next double out of the buffer, skipping delimeters etc. // static char *GetNumber(char *psBuf, double *pdNum) { #if 0 LPSZASSERT(psBuf); #endif // Skip space characters to get the start of the number char *ps = psBuf; while (*ps==' ') ++ps; // Save a pointer to the start of the number. char *psStart = ps; // search for the end of this token while (*ps && !strchr(s_szWhitespace, *ps)) ++ps; // skip trailing spaces. while (*ps==' ') ++ps; // Null terminate the string (knocking out the next delimiter) and step past the null if not end of line. if (*ps && !strchr(s_szLineTerm, *ps)) *ps++ = '\0'; else *ps = '\0'; if (pdNum) { WPTRASSERT(pdNum); *pdNum = atof(psStart); } return ps; } //=============================================================================================== // FUNCTION: GetVersion // PURPOSE: Parse the version number out of the data stream and check it against acceptable // values. // static BOOL GetVersion(char *psBuf, double *pdATFVersion, int *pnError) { #if 0 LPSZASSERT(psBuf); #endif WPTRASSERT(pdATFVersion); double dNum = 0; if (strlen(psBuf) < 5) ERRORRETURN(pnError, ATF_ERROR_INVALIDFILE); // Skip leading whitespace. char *psz = psBuf+FILE_ID_LEN; while (*psz && strchr(s_szWhitespace, *psz)) psz++; GetNumber(psz, &dNum); if (strncmp(psBuf, ATF_FILE_ID, FILE_ID_LEN) == 0) { if ((dNum > ATF_CURRENTVERSION) || (dNum==0.0)) ERRORRETURN(pnError, ATF_ERROR_BADVERSION); // File is an ATF file *pdATFVersion = dNum; } else if (strncmp(psBuf, PAF_FILE_ID, FILE_ID_LEN) == 0) { if (dNum != PREVIOUS_PAF_VERSION) ERRORRETURN(pnError, ATF_ERROR_BADVERSION); // Previous PAF V5.0 files are supported as ATF V0.0 *pdATFVersion = 0.0; } else ERRORRETURN(pnError, ATF_ERROR_INVALIDFILE); return TRUE; } //=============================================================================================== // FUNCTION: CleanupMem // PURPOSE: Frees strings that have been strdup'ed into the array. // static void CleanupMem(char **ppsz, int nItems) { if (!ppsz) return; while (nItems--) { if (*ppsz) free(*ppsz); ppsz++; } } //============================================================================================== // FUNCTION: StripSpaces // PURPOSE: Strips space characters out of the start and end of the passed string. // NOTES: This routine is DESTRUCTIVE in that it replaces any trailing spaces with '\0's. // It contains its own static definition of whitespace, not that it does not // include ','. // RETURNS: Pointer to the first non-white-space character. // static LPSTR StripSpaces(LPSTR pszSource) { // Garbage in == garbage out. if (!pszSource) return pszSource; // Characters that are regarded as white space. static const char szWhiteSpace[] = " \t\r\n"; #if 0 LPSZASSERT(pszSource); #endif // Strip leading white space. char *pszFirstChar = pszSource + strspn(pszSource, szWhiteSpace); // If nothing left, return. if (*pszFirstChar=='\0') { pszSource[0] = '\0'; return pszSource; } // Strip trailing white space. char *pszLastChar = pszFirstChar + strlen(pszFirstChar) - 1; while (pszLastChar > pszFirstChar) { if (strchr(szWhiteSpace, *pszLastChar) == NULL) break; *pszLastChar-- = '\0'; } // Move the sub-string to the start of the source string. if (pszFirstChar > pszSource) memmove(pszSource, pszFirstChar, strlen(pszFirstChar)+1); return pszSource; } //=============================================================================================== // FUNCTION: FixColumnTitles // PURPOSE: This function reads PAF V5.0 (ATF 0.0) headings. // static BOOL FixColumnTitles(int nColumns, ATF_FILEINFO *pATF) { WPTRASSERT(pATF); char *ps = pATF->pszIOBuffer; char *psEnd = pATF->pszIOBuffer + pATF->nIOBufferSize; for (int i=0; i= psEnd) // return an error if past end of buffer. return FALSE; } // Save the start of the title. char *psStart = ps; // Search for the end of the title. while ((*ps!='"') && (*ps!='\t')) { ++ps; if (ps >= psEnd) // return an error if past end of buffer. return FALSE; } *ps++ = '\0'; #if !defined(_WINDOWS) || defined(__MINGW32__) pATF->apszFileColTitles[i] = strdup(StripSpaces(psStart)); #else pATF->apszFileColTitles[i] = _strdup(StripSpaces(psStart)); #endif if (pATF->apszFileColTitles[i] == NULL) return FALSE; } return TRUE; } //=============================================================================================== // FUNCTION: FixColumnUnits // PURPOSE: This function reads PAF V5.0 (ATF 0.0) headings. // static BOOL FixColumnUnits(int nColumns, ATF_FILEINFO *pATF) { WPTRASSERT(pATF); char *ps = pATF->pszIOBuffer; char *psEnd = pATF->pszIOBuffer + pATF->nIOBufferSize; for (int i=0; i= psEnd) // return an error if past end of buffer. return FALSE; } // Save the start of the units char *psStart = ps; // Search for the end of the units. while ((*ps!='"') && (*ps!='\t')) { ++ps; if (ps >= psEnd) // return an error if past end of buffer. return FALSE; } *ps++ = '\0'; #if !defined(_WINDOWS) || defined(__MINGW32__) pATF->apszFileColUnits[i] = strdup(StripSpaces(psStart)); #else pATF->apszFileColUnits[i] = _strdup(StripSpaces(psStart)); #endif if (pATF->apszFileColUnits[i] == NULL) return FALSE; } return TRUE; } //=============================================================================================== // FUNCTION: FixColumnHeadings // PURPOSE: Store away the column headings and the column units strings for ATF files. // static BOOL FixColumnHeadings(int nColumns, ATF_FILEINFO *pATF) { WPTRASSERT(pATF); char *ps = pATF->pszIOBuffer; char *psEnd = pATF->pszIOBuffer + pATF->nIOBufferSize; for (int i=0; i= psEnd) // return an error if past end of buffer. return FALSE; } if (*ps=='"') { bDoubleQuote = TRUE; ++ps; } // Save the start of the title char *psStart = ps; for (; *ps && !strchr(s_szWhiteNoSpace, *ps); ++ps) { if (ps >= psEnd) // return an error if past end of buffer. return FALSE; if (bDoubleQuote && (*ps=='"')) break; if (*ps == '(') { if (*(ps-1) == ' ') *(ps-1) = '\0'; bUnits = TRUE; break; } } *ps++ = '\0'; #if !defined(_WINDOWS) || defined(__MINGW32__) pATF->apszFileColTitles[i] = strdup(StripSpaces(psStart)); #else pATF->apszFileColTitles[i] = _strdup(StripSpaces(psStart)); #endif if (pATF->apszFileColTitles[i] == NULL) return FALSE; if (bUnits) { psStart = ps; while (!strchr(s_szDelimiter, *ps) && (*ps!=')')) { if (bDoubleQuote && (*ps=='"')) { bDoubleQuote = FALSE; break; } ++ps; if (ps >= psEnd) // return an error if past end of buffer. return FALSE; } *ps++ = '\0'; #if !defined(_WINDOWS) || defined(__MINGW32__) pATF->apszFileColUnits[i] = strdup(StripSpaces(psStart)); #else pATF->apszFileColUnits[i] = _strdup(StripSpaces(psStart)); #endif if (pATF->apszFileColUnits[i] == NULL) return FALSE; if (bDoubleQuote) { while (*ps && (*ps!='"')) ps++; *ps++ = '\0'; } } } return TRUE; } //=============================================================================================== // FUNCTION: ReadLine // PURPOSE: This function masks gets and processes error conditions // static BOOL ReadLine(ATF_FILEINFO *pATF, int nEOFError, int *pnError) { WPTRASSERT(pATF); char *pszIOBuffer = pATF->pszIOBuffer; int nReturn = getsBuf(pATF, pszIOBuffer, pATF->nIOBufferSize); if (nReturn == GETS_EOF) ERRORRETURN(pnError, nEOFError); if (nReturn == GETS_ERROR) ERRORRETURN(pnError, ATF_ERROR_IOERROR); if (nReturn == GETS_NOEOL) ERRORRETURN(pnError, ATF_ERROR_LINETOOLONG); if (pszIOBuffer[0] == ENDOFFILE) pszIOBuffer[0] = '\0'; return TRUE; } //=============================================================================================== // FUNCTION: ReadHeaderInfo // PURPOSE: Reads the header information out of the file and stores it away in the file // descriptor. // static BOOL ReadHeaderInfo(ATF_FILEINFO *pATF, int *pnColumns, int *pnError) { WPTRASSERT(pnColumns); char szReadBuf[128]; double dATFVersion, dNum; int nHeaders, nColumns, i; long lCurrentPos; // Check if the version number is suported if (getsBuf(pATF, szReadBuf, sizeof(szReadBuf))) ERRORRETURN(pnError, ATF_ERROR_INVALIDFILE); if (!GetVersion(szReadBuf, &dATFVersion, pnError)) return FALSE; // Read in the number of header records and the number of columns of data // in the file if (getsBuf(pATF, szReadBuf, sizeof(szReadBuf))) ERRORRETURN(pnError, ATF_ERROR_BADHEADER); if (dATFVersion == 0.0) { // Read number of headers and columns as in previous (PAF 5.0) version GetNumber(szReadBuf, &dNum); nHeaders = (int)dNum; if (getsBuf(pATF, szReadBuf, sizeof(szReadBuf))) ERRORRETURN(pnError, ATF_ERROR_BADHEADER); GetNumber(szReadBuf, &dNum); nColumns = (int)dNum; } else { // Parse out first number (Headers) char *ps = GetNumber(szReadBuf, &dNum); nHeaders = (int)dNum; // Parse out second number (Columns) GetNumber(ps, &dNum); nColumns = (int)dNum; } if (nHeaders < 0) nHeaders = 0; if (nColumns < 0) nColumns = 0; // Return the number of columns to the user if a pointer was passed in if (pnColumns) *pnColumns = nColumns; if (nColumns > ATF_MAXCOLUMNS) ERRORRETURN(pnError, ATF_ERROR_TOOMANYCOLS); // Save the various pieces of information about this file // pATF->hFile = hFile; // now set in _CreateFileBuf pATF->nHeaders = nHeaders; pATF->nColumns = nColumns; pATF->eState = eOPENED; pATF->bWriting = FALSE; pATF->dFileVersion = dATFVersion; if (!AllocIOBuffer(pATF)) ERRORRETURN(pnError, ATF_ERROR_NOMEMORY); // Now save the current position and skip the header records and get the // column title and unit strings lCurrentPos = SetFilePointerBuf(pATF, 0, NULL, FILE_CURRENT); for (i=0; iapszFileColTitles = (char **)calloc(nColumns, sizeof(char *)); if (pATF->apszFileColTitles == NULL) ERRORRETURN(pnError, ATF_ERROR_NOMEMORY); pATF->apszFileColUnits = (char **)calloc(nColumns, sizeof(char *)); if (pATF->apszFileColUnits == NULL) { free(pATF->apszFileColTitles); pATF->apszFileColTitles = NULL; ERRORRETURN(pnError, ATF_ERROR_NOMEMORY); } if (!ReadLine(pATF, ATF_ERROR_BADHEADER, pnError)) return FALSE; if (dATFVersion == 0.0) { if (!FixColumnTitles(nColumns, pATF)) { CleanupMem(pATF->apszFileColTitles, nColumns); ERRORRETURN(pnError, ATF_ERROR_BADHEADER); } if (!ReadLine(pATF, ATF_ERROR_BADHEADER, pnError)) { CleanupMem(pATF->apszFileColTitles, nColumns); return FALSE; } if (!FixColumnUnits(nColumns, pATF)) { CleanupMem(pATF->apszFileColTitles, nColumns); CleanupMem(pATF->apszFileColUnits, nColumns); ERRORRETURN(pnError, ATF_ERROR_BADHEADER); } } else if (!FixColumnHeadings(nColumns, pATF)) { CleanupMem(pATF->apszFileColTitles, nColumns); CleanupMem(pATF->apszFileColUnits, nColumns); ERRORRETURN(pnError, ATF_ERROR_BADHEADER); } // Return to the saved position SetFilePointerBuf(pATF, lCurrentPos, NULL, FILE_BEGIN); return TRUE; } //=============================================================================================== // FUNCTION: WriteHeaderInfo // PURPOSE: Write the first compulsory header lines out to the file. // static BOOL WriteHeaderInfo(ATF_FILEINFO *pATF, int nColumns, int *pnError) { // Writing a new file; Setup any necessary info pATF->dFileVersion = ATF_CURRENTVERSION; pATF->eState = eOPENED; pATF->bWriting = TRUE; pATF->bDataOnLine = FALSE; pATF->nHeaders = 0; pATF->nColumns = nColumns; // Allocate / re-allocate the IOBuffer. if (!AllocIOBuffer(pATF)) ERRORRETURN(pnError, ATF_ERROR_NOMEMORY); // Allocate space to hold column titles and units. pATF->apszFileColTitles = (char **)calloc(nColumns, sizeof(char *)); if (pATF->apszFileColTitles == NULL) ERRORRETURN(pnError, ATF_ERROR_NOMEMORY); pATF->apszFileColUnits = (char **)calloc(nColumns, sizeof(char *)); if (pATF->apszFileColUnits == NULL) { free(pATF->apszFileColTitles); pATF->apszFileColTitles = NULL; ERRORRETURN(pnError, ATF_ERROR_NOMEMORY); } if (pATF->uFlags & ATF_DONTWRITEHEADER) { pATF->lFilePos = 0; return TRUE; } // Write the special marker string and the file version number char *pszIOBuffer = pATF->pszIOBuffer; sprintf(pszIOBuffer, "%s%s%.1f%s", ATF_FILE_ID, pATF->szSeparator, ATF_CURRENTVERSION, s_szEndOfLine); if (!putsBuf(pATF, pszIOBuffer)) ERRORRETURN(pnError, ATF_ERROR_IOERROR); // Save the current position so that we may update the number of header records pATF->lFilePos = SetFilePointerBuf(pATF, 0, NULL, FILE_CURRENT); // Write the number of headers and columns that will be written, leaving // enough trailing spaces for 4 digits of headers (more than enough) sprintf(pszIOBuffer, "0%s%d %s", pATF->szSeparator, nColumns, s_szEndOfLine); if (!putsBuf(pATF, pszIOBuffer)) ERRORRETURN(pnError, ATF_ERROR_IOERROR); return TRUE; } //=============================================================================================== // FUNCTION: _FormatNumber // PURPOSE: Formats the digits of dNum into pszString, suppressing trailing zeros. // In the event that "0." is produced as output from gcvt, truncate to "0" // // RETURNS: TRUE if success; FALSE if failure // #ifdef _WINDOWS // #include "..\AxonValidation\AxonValidation.h" // for VAL_* functions (standard Axon float/double->string formatting) #endif static BOOL _FormatNumber(double dNum, int nDigits, char *pszString, UINT uSize) { ARRAYASSERT(pszString, uSize); #if !defined(_WINDOWS) || defined(__MINGW32__) sprintf(pszString, "%.*g", nDigits, dNum); // char* res = gcvt(dNum, nDigits, pszString); #else _gcvt(dNum, nDigits, pszString); #endif int l = (int)strlen(pszString); if ((l > 0) && (pszString[l-1]=='.')) pszString[l-1] = '\0'; return TRUE; /* #else return VAL_ConvertDblToStr(dNum, pszString, uSize, VAL_FMT_SIG_DIGITS, 0, nDigits, NULL); #endif */ } //=============================================================================================== // FUNCTION: ATF_OpenFile // PURPOSE: Opens an ATF file for either reading or writing. // BOOL WINAPI ATF_OpenFile(LPCSTR szFileName, UINT uFlags, int *pnColumns, int *pnFile, int *pnError) { #if 0 LPSZASSERT(szFileName); #endif WPTRASSERT(pnColumns); WPTRASSERT(pnFile); // keep state of DONTWRITEHEADER flag BOOL bDontWriteHeader = uFlags & ATF_DONTWRITEHEADER; int nColumns, nFile; HANDLE hFile = INVALID_HANDLE_VALUE; ATF_FILEINFO *pATF = NULL; if (!GetNewFileDescriptor(&pATF, &nFile, pnError)) return FALSE; // copy name: #if !defined(_WINDOWS) || defined(__MINGW32__) pATF->pszFileName = strdup(szFileName); #else pATF->pszFileName = _strdup(szFileName); #endif if (pATF->pszFileName == NULL) goto OpenError; if (uFlags & ATF_READONLY) { hFile = CreateFileBuf(pATF, GENERIC_READ, FILE_SHARE_READ, NULL, OPEN_EXISTING, FILE_ATTRIBUTE_NORMAL, NULL); if (hFile == INVALID_HANDLE_VALUE) { if (pnError) *pnError = ATF_ERROR_NOFILE; goto OpenError; } pATF->uFlags = uFlags; // Read the header information into the global variables if (!ReadHeaderInfo(pATF, pnColumns, pnError)) goto OpenError; } else { nColumns = *pnColumns; if (nColumns > ATF_MAXCOLUMNS) { if (pnError) *pnError = ATF_ERROR_TOOMANYCOLS; goto OpenError; } // Try to open any existing file with same name #if defined(_WINDOWS) && !defined(__MINGW32__) hFile = CreateFileBuf(pATF, GENERIC_READ, FILE_SHARE_READ, NULL, OPEN_EXISTING, FILE_ATTRIBUTE_NORMAL, NULL); if (hFile != INVALID_HANDLE_VALUE) { if ((uFlags & ATF_OVERWRTIFEXIST)==0) { if (pnError) *pnError = ATF_ERROR_FILEEXISTS; goto OpenError; } if ((uFlags & ATF_APPENDIFEXIST)!=0) { // If we are appending to the file, read the header // to confirm that it is a valid ATF file that we are // appending to. if (!ReadHeaderInfo(pATF, NULL, pnError)) goto OpenError; } CloseHandleBuf(pATF); } else #endif uFlags = ATF_WRITEONLY; pATF->uFlags = uFlags; // Now, open the file for output hFile = CreateFileBuf(pATF, GENERIC_READ | GENERIC_WRITE, FILE_SHARE_READ, NULL, uFlags & ATF_APPENDIFEXIST ? OPEN_EXISTING : CREATE_ALWAYS, FILE_ATTRIBUTE_NORMAL, NULL); if (hFile == INVALID_HANDLE_VALUE) { if (pnError) *pnError = ATF_ERROR_NOFILE; goto OpenError; } if ((uFlags & ATF_APPENDIFEXIST)!=0) { // pATF->hFile = hFile; pATF->bDataOnLine = FALSE; pATF->eState = eDATAAPPENDED; pATF->bWriting = TRUE; } else { // Set the DONTWRITEHEADER flag if needed pATF->uFlags |= bDontWriteHeader; // Write the header information and set up global variables if (!WriteHeaderInfo(pATF, nColumns, pnError)) { CloseHandleBuf(pATF); goto OpenError; } } } *pnFile = nFile; return TRUE; OpenError: if (hFile != INVALID_HANDLE_VALUE) CloseHandleBuf(pATF); if (pATF->pszFileName != NULL) free(pATF->pszFileName); free(pATF); g_FileDescriptor[nFile] = NULL; return FALSE; } //=============================================================================================== // FUNCTION: HasUnits // PURPOSE: Checks for the presence of a units string. // static BOOL HasUnits(LPCSTR pszUnits) { return (pszUnits && (pszUnits[0]!=0)); } //=============================================================================================== // FUNCTION: UpdateHeaders // PURPOSE: Update the headers in the ATF file. // static BOOL UpdateHeaders(ATF_FILEINFO *pATF, int *pnError) { WPTRASSERT(pATF); if (pATF->uFlags & ATF_DONTWRITEHEADER) return TRUE; char *pszIOBuffer = pATF->pszIOBuffer; // if there are unterminated header lines then terminate the last one if (pATF->bDataOnLine) { if (!putsBuf(pATF, s_szEndOfLine)) ERRORRETURN(pnError, ATF_ERROR_IOERROR); pATF->nHeaders++; pATF->bDataOnLine = FALSE; } // Save the current position of the file long lCurrentPos = SetFilePointerBuf(pATF, 0, NULL, FILE_CURRENT); // Move to the location of the record containing the number of header records SetFilePointerBuf(pATF, pATF->lFilePos, NULL, FILE_BEGIN); // Create the string for the number of header records { sprintf(pszIOBuffer, "%d%s%d", pATF->nHeaders, pATF->szSeparator, pATF->nColumns); if (!putsBuf(pATF, pszIOBuffer)) ERRORRETURN(pnError, ATF_ERROR_IOERROR); } // Restore the position of the file SetFilePointerBuf(pATF, lCurrentPos, NULL, FILE_BEGIN); // Output the column titles and units record for (int i=0; inColumns; i++) { // Start with separator if not the first column if (i > 0) strcpy(pszIOBuffer, pATF->szSeparator); else pszIOBuffer[0] = '\0'; // Add next title string strcat(pszIOBuffer, "\""); if (pATF->apszFileColTitles[i] != NULL) { strcat(pszIOBuffer, pATF->apszFileColTitles[i]); if (HasUnits(pATF->apszFileColUnits[i])) strcat(pszIOBuffer, " "); } if (HasUnits(pATF->apszFileColUnits[i])) { strcat(pszIOBuffer, "("); strcat(pszIOBuffer, pATF->apszFileColUnits[i]); strcat(pszIOBuffer, ")"); } strcat(pszIOBuffer, "\""); if (!putsBuf(pATF, pszIOBuffer)) ERRORRETURN(pnError, ATF_ERROR_IOERROR); } if (!putsBuf(pATF, s_szEndOfLine)) ERRORRETURN(pnError, ATF_ERROR_IOERROR); pATF->bDataOnLine = FALSE; pszIOBuffer[0] = '\0'; return TRUE; } //=============================================================================================== // FUNCTION: ATF_CloseFile // PURPOSE: Close an ATF file that was opened with ATF_OpenFile. // BOOL WINAPI ATF_CloseFile(int nFile) { ATF_FILEINFO *pATF = NULL; if (!GetFileDescriptor(&pATF, nFile, NULL)) return FALSE; // Check that we have written out the headers at least. if ((pATF->eState < eDATAWRITTEN) && pATF->bWriting) UpdateHeaders(pATF, NULL); // Close the file and update the state variable CloseHandleBuf(pATF); CleanupMem(pATF->apszFileColTitles, pATF->nColumns); free(pATF->apszFileColTitles); CleanupMem(pATF->apszFileColUnits, pATF->nColumns); free(pATF->apszFileColUnits); FreeIOBuffer(pATF); if (pATF->pszFileName != NULL) free(pATF->pszFileName); free(pATF); g_FileDescriptor[nFile] = NULL; return TRUE; } //=============================================================================================== // FUNCTION: ATF_SetSeperator // PURPOSE: Sets the data item separator to be used when writing out an ATF file. // BOOL WINAPI ATF_SetSeperator(int nFile, BOOL bUseCommas, int *pnError) { ATF_FILEINFO *pATF = NULL; if (!GetFileDescriptor(&pATF, nFile, pnError)) return FALSE; pATF->szSeparator[0] = s_szDelimiter[bUseCommas ? 1 : 0]; return TRUE; } //=============================================================================================== // FUNCTION: ATF_IsAppending // PURPOSE: Returns TRUE if the file has been opened for appending. // BOOL WINAPI ATF_IsAppending(int nFile) { ATF_FILEINFO *pATF = NULL; if (!GetFileDescriptor(&pATF, nFile, NULL)) return FALSE; return (pATF->eState == eDATAAPPENDED); } //=============================================================================================== // FUNCTION: ATF_RewindFile // PURPOSE: Rewind the data section of the ATF file back to the beginning. // BOOL WINAPI ATF_RewindFile(int nFile, int *pnError) { ATF_FILEINFO *pATF = NULL; if (!GetFileDescriptor(&pATF, nFile, pnError)) return FALSE; if (pATF->bWriting) ERRORRETURN(pnError, ATF_ERROR_BADSTATE); if (pATF->eState != eDATAREAD) ERRORRETURN(pnError, ATF_ERROR_BADSTATE); SetFilePointerBuf(pATF, pATF->lDataPtr, NULL, FILE_BEGIN); return TRUE; } //=============================================================================================== // FUNCTION: ATF_CountDataLines // PURPOSE: Counts lines of data in an ATF file, stopping at the first empty line, or EOF. // BOOL WINAPI ATF_CountDataLines(int nFile, long *plNumLines, int *pnError) { WPTRASSERT(plNumLines); long lDataLines = 0L; ATF_FILEINFO *pATF = NULL; if (!GetFileDescriptor(&pATF, nFile, pnError)) return FALSE; while (ReadDataRecord(pATF, pnError)) { if (strchr(s_szLineTerm, pATF->pszIOBuffer[0])) break; ++lDataLines; } ATF_RewindFile(nFile, NULL); *plNumLines = lDataLines; return TRUE; } //=============================================================================================== // FUNCTION: ATF_GetNumHeaders // PURPOSE: Gets the number of optional data records in the ATF file. // BOOL WINAPI ATF_GetNumHeaders(int nFile, int *pnHeaders, int *pnError) { WPTRASSERT(pnHeaders); ATF_FILEINFO *pATF = NULL; if (!GetFileDescriptor(&pATF, nFile, pnError)) return FALSE; *pnHeaders = pATF->nHeaders; return TRUE; } //=============================================================================================== // FUNCTION: ATF_WriteHeaderRecord // PURPOSE: Writes an optional header r3cord to the ATF file. // BOOL WINAPI ATF_WriteHeaderRecord(int nFile, LPCSTR pszText, int *pnError) { #if 0 LPSZASSERT(pszText); #endif ATF_FILEINFO *pATF = NULL; if (!GetFileDescriptor(&pATF, nFile, pnError)) return FALSE; if (pATF->uFlags & ATF_DONTWRITEHEADER) return TRUE; char *pszIOBuffer = pATF->pszIOBuffer; // Check that we are in the correct state for this file if (pATF->eState > eHEADERED) ERRORRETURN(pnError, ATF_ERROR_BADSTATE); // Update the state if necessary pATF->eState = eHEADERED; // Write out the header record if (pATF->bDataOnLine) strcpy(pszIOBuffer, pATF->szSeparator); else pszIOBuffer[0] = '\0'; strcat(pszIOBuffer, "\""); strcat(pszIOBuffer, pszText); strcat(pszIOBuffer, "\""); if (!putsBuf(pATF, pszIOBuffer)) ERRORRETURN(pnError, ATF_ERROR_IOERROR); pATF->bDataOnLine = TRUE; return TRUE; } //=============================================================================================== // FUNCTION: ATF_SetColumnTitle // PURPOSE: Sets the next column title. Columns are labeled sequentially. // BOOL WINAPI ATF_SetColumnTitle(int nFile, LPCSTR pszText, int *pnError) { #if 0 LPSZASSERT(pszText); #endif int i; ATF_FILEINFO *pATF = NULL; if (!GetFileDescriptor(&pATF, nFile, pnError)) return FALSE; // Check that we are in the correct state for this file if (pATF->eState > eHEADERED) ERRORRETURN(pnError, ATF_ERROR_BADSTATE); for (i=0; inColumns; i++) if (pATF->apszFileColTitles[i] == NULL) break; if (i==pATF->nColumns) ERRORRETURN(pnError, ATF_ERROR_TOOMANYCOLS); // Copy the new column title into the string buffer and save a pointer to it. #if !defined(_WINDOWS) || defined(__MINGW32__) LPSTR psz = strdup(pszText); #else LPSTR psz = _strdup(pszText); #endif if (psz == NULL) ERRORRETURN(pnError, ATF_ERROR_NOMEMORY); pATF->apszFileColTitles[i] = psz; return TRUE; } //=============================================================================================== // FUNCTION: ATF_SetColumnUnits // PURPOSE: Sets the next column units label. Columns are labeled sequentially. // BOOL WINAPI ATF_SetColumnUnits(int nFile, LPCSTR pszText, int *pnError) { #if 0 LPSZASSERT(pszText); #endif int i; ATF_FILEINFO *pATF = NULL; if (!GetFileDescriptor(&pATF, nFile, pnError)) return FALSE; // Check that we are in the correct state for this file if (pATF->eState > eHEADERED) ERRORRETURN(pnError, ATF_ERROR_BADSTATE); for (i=0; inColumns; i++) if (pATF->apszFileColUnits[i] == NULL) break; if (i==pATF->nColumns) ERRORRETURN(pnError, ATF_ERROR_TOOMANYCOLS); // Copy the new column Unit into the string buffer and save a pointer to it. #if !defined(_WINDOWS) || defined(__MINGW32__) LPSTR psz = strdup(pszText); #else LPSTR psz = _strdup(pszText); #endif if (psz == NULL) ERRORRETURN(pnError, ATF_ERROR_NOMEMORY); pATF->apszFileColUnits[i] = psz; return TRUE; } //=============================================================================================== // FUNCTION: ATF_WriteEndOfLine // PURPOSE: Terminates the current data line when writing to an ATF file. // BOOL WINAPI ATF_WriteEndOfLine(int nFile, int *pnError) { ATF_FILEINFO * pATF = NULL; if (!GetFileDescriptor(&pATF, nFile, pnError)) return FALSE; // Write out the EndOfLine character to the file if (!putsBuf(pATF, s_szEndOfLine)) ERRORRETURN(pnError, ATF_ERROR_IOERROR); // Reset data-on-line flag pATF->bDataOnLine = FALSE; // If a header is being written, increment the count of header records if (pATF->eState == eHEADERED) pATF->nHeaders++; return TRUE; } //=============================================================================================== // FUNCTION: ATF_WriteDataRecord // PURPOSE: Writes a data record out to the ATF file. // BOOL WINAPI ATF_WriteDataRecord(int nFile, LPCSTR pszText, int *pnError) { #if 0 LPSZASSERT(pszText); #endif ATF_FILEINFO * pATF = NULL; if (!GetFileDescriptor(&pATF, nFile, pnError)) return FALSE; // Check that we are in the correct state for this file if (pATF->eState < eDATAWRITTEN) { if (!UpdateHeaders(pATF, pnError)) return FALSE; pATF->eState = eDATAWRITTEN; } else if (pATF->bDataOnLine) if (!putsBuf(pATF, pATF->szSeparator)) ERRORRETURN(pnError, ATF_ERROR_IOERROR); // Write out the text string to the file if (!putsBuf(pATF, pszText)) ERRORRETURN(pnError, ATF_ERROR_IOERROR); // Set data-on-line flag pATF->bDataOnLine = TRUE; return TRUE; } //=============================================================================================== // FUNCTION: ATF_WriteDataComment // PURPOSE: Writes a comment record out to the ATF file. // BOOL WINAPI ATF_WriteDataComment(int nFile, LPCSTR pszText, int *pnError) { #if 0 LPSZASSERT(pszText); #endif char buf[128]; #if defined(_WINDOWS) && !defined(__MINGW32__) _snprintf(buf, sizeof(buf), "\"%s\"", pszText); #else snprintf(buf, sizeof(buf), "\"%s\"", pszText); #endif return ATF_WriteDataRecord(nFile, buf, pnError); } //=============================================================================================== // FUNCTION: ATF_WriteDataRecordArray // PURPOSE: Writes an array of data values out to a line of the ATF file. // BOOL WINAPI ATF_WriteDataRecordArray(int nFile, int nCount, double *pdVals, int *pnError) { ARRAYASSERT(pdVals, nCount); char psTemp[ATF_DBL_STR_LEN]; ATF_FILEINFO *pATF = NULL; if (!GetFileDescriptor(&pATF, nFile, pnError)) return FALSE; if (nCount > pATF->nColumns) ERRORRETURN(pnError, ATF_ERROR_TOOMANYCOLS); char *pszIOBuffer = pATF->pszIOBuffer; // Check that we are in the correct state for this file if (pATF->eState < eDATAWRITTEN) { if (!UpdateHeaders(pATF, pnError)) return FALSE; pATF->eState = eDATAWRITTEN; } // Create the output string for this record char *ps = pszIOBuffer; *ps = '\0'; if (nCount > 0) { if (pATF->bDataOnLine) strcpy(ps++, pATF->szSeparator); if (!_FormatNumber(*pdVals++, ATF_DBL_SIG_DIGITS, psTemp, ATF_DBL_STR_LEN)) ERRORRETURN(pnError, ATF_ERROR_BADFLTCNV); strcpy(ps, psTemp); ps += strlen(psTemp); } for (int i=1; iszSeparator); ps += strlen(pATF->szSeparator); if (!_FormatNumber(*pdVals++, ATF_DBL_SIG_DIGITS, psTemp, ATF_DBL_STR_LEN)) ERRORRETURN(pnError, ATF_ERROR_BADFLTCNV); strcpy(ps, psTemp); ps += strlen(psTemp); } // Write out the text string to the file if (!putsBuf(pATF, pszIOBuffer)) ERRORRETURN(pnError, ATF_ERROR_IOERROR); // Set data-on-line flag pATF->bDataOnLine = TRUE; return TRUE; } //=============================================================================================== // FUNCTION: ATF_WriteDataRecordArrayFloat // PURPOSE: Writes an array of float data values out to a line of the ATF file. // BOOL WINAPI ATF_WriteDataRecordArrayFloat(int nFile, int nCount, float *pfVals, int *pnError) { ARRAYASSERT(pfVals, nCount); char psTemp[ATF_FLT_STR_LEN]; ATF_FILEINFO *pATF = NULL; if (!GetFileDescriptor(&pATF, nFile, pnError)) return FALSE; if (nCount > pATF->nColumns) ERRORRETURN(pnError, ATF_ERROR_TOOMANYCOLS); char *pszIOBuffer = pATF->pszIOBuffer; // Check that we are in the correct state for this file if (pATF->eState < eDATAWRITTEN) { if (!UpdateHeaders(pATF, pnError)) return FALSE; pATF->eState = eDATAWRITTEN; } // Create the output string for this record char *ps = pszIOBuffer; *ps = '\0'; if (nCount > 0) { if (pATF->bDataOnLine) strcpy(ps++, pATF->szSeparator); if (!_FormatNumber((double)*pfVals++, ATF_FLT_SIG_DIGITS, psTemp, ATF_FLT_STR_LEN)) ERRORRETURN(pnError, ATF_ERROR_BADFLTCNV); strcpy(ps, psTemp); ps += strlen(psTemp); } for (int i=1; iszSeparator); ps += strlen(pATF->szSeparator); if (!_FormatNumber((double)*pfVals++, ATF_FLT_SIG_DIGITS, psTemp, ATF_FLT_STR_LEN)) ERRORRETURN(pnError, ATF_ERROR_BADFLTCNV); strcpy(ps, psTemp); ps += strlen(psTemp); } // Write out the text string to the file if (!putsBuf(pATF, pszIOBuffer)) ERRORRETURN(pnError, ATF_ERROR_IOERROR); // Set data-on-line flag pATF->bDataOnLine = TRUE; return TRUE; } //=============================================================================================== // FUNCTION: ATF_WriteDataRecord1 // PURPOSE: Writes a single double data item out to the ATF file. // BOOL WINAPI ATF_WriteDataRecord1(int nFile, double dNum1, int *pnError) { char psTemp[ATF_DBL_STR_LEN]; if (!_FormatNumber(dNum1, ATF_DBL_SIG_DIGITS, psTemp, ATF_DBL_STR_LEN)) ERRORRETURN(pnError, ATF_ERROR_BADFLTCNV); return ATF_WriteDataRecord(nFile, psTemp, pnError); } //=============================================================================================== // FUNCTION: ATF_WriteDataRecord1Float // PURPOSE: Writes a single float data item out to the ATF file. // BOOL WINAPI ATF_WriteDataRecord1Float(int nFile, float fNum1, int *pnError) { char psTemp[ATF_FLT_STR_LEN]; if (!_FormatNumber((double)fNum1, ATF_FLT_SIG_DIGITS, psTemp, ATF_FLT_STR_LEN)) ERRORRETURN(pnError, ATF_ERROR_BADFLTCNV); return ATF_WriteDataRecord(nFile, psTemp, pnError); } //=============================================================================================== // FUNCTION: GetComment // PURPOSE: Strips a comment string out of the data stream, removing separators and // double quotes. // static char *GetComment(char *pszStr) { // Strip off any leading or trailing space characters pszStr = StripSpaces(pszStr); // If nothing left, return. if (*pszStr=='\0') return pszStr; // Strip leading and trailing quotes from the string if (*pszStr == '"') { pszStr++; char *ps = pszStr; while (*ps && (*ps!='"')) ps++; if (*ps != '\0') *ps = '\0'; } return pszStr; } //=============================================================================================== // FUNCTION: ReadHeaderLine // PURPOSE: Reads an optional header line from the file. // static BOOL ReadHeaderLine(ATF_FILEINFO *pATF, int *pnError) { WPTRASSERT(pATF); // Check that we are in the correct state for this file if (pATF->eState > eHEADERED) ERRORRETURN(pnError, ATF_ERROR_BADSTATE); pATF->eState = eHEADERED; // Check if there are any more header records left to be read if (pATF->nHeaders < 1) ERRORRETURN(pnError, ATF_ERROR_NOMORE); // Read a header record and copy it into the return buffer if (!ReadLine(pATF, ATF_ERROR_BADHEADER, pnError)) return FALSE; // remove any trailing white space at the end of the line. StripSpaces(pATF->pszIOBuffer); pATF->nHeaders--; return TRUE; } //=============================================================================================== // FUNCTION: ATF_ReadHeaderLine // PURPOSE: Exported version of ReadHeaderLine. // BOOL WINAPI ATF_ReadHeaderLine(int nFile, char *psBuf, int nMaxLen, int *pnError) { ARRAYASSERT(psBuf, nMaxLen); ATF_FILEINFO *pATF = NULL; if (!GetFileDescriptor(&pATF, nFile, pnError)) return FALSE; // Load the next line, checking state etc if (!ReadHeaderLine(pATF, pnError)) return FALSE; strncpyz(psBuf, pATF->pszIOBuffer, nMaxLen); return TRUE; } //=============================================================================================== // FUNCTION: ATF_ReadHeaderNoQuotes // PURPOSE: Reads a header record, stripping of any double quotes if present. // BOOL WINAPI ATF_ReadHeaderNoQuotes(int nFile, char *psBuf, int nMaxLen, int *pnError) { ARRAYASSERT(psBuf, nMaxLen); ATF_FILEINFO *pATF = NULL; if (!GetFileDescriptor(&pATF, nFile, pnError)) return FALSE; // Load the next line, checking state etc if (!ReadHeaderLine(pATF, pnError)) return FALSE; // Strip off any leading and trailing quotes from the string char *psComment = GetComment(pATF->pszIOBuffer); strncpyz(psBuf, psComment, nMaxLen); return TRUE; } //=============================================================================================== // FUNCTION: ATF_GetColumnTitle // PURPOSE: Returns the title of a particular column in the ATF file. // BOOL WINAPI ATF_GetColumnTitle(int nFile, int nColumn, char *pszText, int nMaxTxt, int *pnError) { ARRAYASSERT(pszText, nMaxTxt); ATF_FILEINFO *pATF = NULL; if (!GetFileDescriptor(&pATF, nFile, pnError)) return FALSE; // Check that the column number is within range. if ((nColumn < 0) || (nColumn >= pATF->nColumns)) ERRORRETURN(pnError, ATF_ERROR_BADCOLNUM); if (pATF->apszFileColTitles[nColumn] != NULL) strncpyz(pszText, pATF->apszFileColTitles[nColumn], nMaxTxt); else pszText[0] = '\0'; return TRUE; } //=============================================================================================== // FUNCTION: ATF_GetColumnUnits // PURPOSE: Returns the units of a particular column in the ATF file. // BOOL WINAPI ATF_GetColumnUnits(int nFile, int nColumn, char *pszText, int nMaxTxt, int *pnError) { ARRAYASSERT(pszText, nMaxTxt); ATF_FILEINFO *pATF = NULL; if (!GetFileDescriptor(&pATF, nFile, pnError)) return FALSE; // Check that the column number is within range. if ((nColumn < 0) || (nColumn >= pATF->nColumns)) ERRORRETURN(pnError, ATF_ERROR_BADCOLNUM); if (pATF->apszFileColUnits[nColumn] != NULL) strncpyz(pszText, pATF->apszFileColUnits[nColumn], nMaxTxt); else pszText[0] = '\0'; return TRUE; } //=============================================================================================== // FUNCTION: ReadDataRecord // PURPOSE: Internal workhorse function for parsing lines out of the data stream. // static BOOL ReadDataRecord(ATF_FILEINFO *pATF, int *pnError) { WPTRASSERT(pATF); // Check that we are in the correct state for this file if (pATF->eState < eDATAREAD) { // Read any header records that were not processed while (pATF->nHeaders-- > 0) if (!ReadLine(pATF, ATF_ERROR_BADHEADER, pnError)) return FALSE; // Skip the column titles and units if (!ReadLine(pATF, ATF_ERROR_BADHEADER, pnError)) return FALSE; if (pATF->dFileVersion == 0.0) if (!ReadLine(pATF, ATF_ERROR_BADHEADER, pnError)) return FALSE; pATF->lDataPtr = SetFilePointerBuf(pATF, 0, NULL, FILE_CURRENT); pATF->eState = eDATAREAD; } // Update the file state and check for end-of-file // JT - we may need this: // if (feof(pATF->hFile)) // ERRORRETURN(pnError, ATF_ERROR_NOMORE); // Read the next record from the data file and return it // JT - we may need to reconsider what error we use here: // return ReadLine(pATF, ATF_ERROR_IOERROR, pnError); return ReadLine(pATF, ATF_ERROR_NOMORE, pnError); } //=============================================================================================== // FUNCTION: ATF_ReadDataRecord // PURPOSE: Returns the next complete line from the ATF file. // BOOL WINAPI ATF_ReadDataRecord(int nFile, char *pszText, int nMaxLen, int *pnError) { ARRAYASSERT(pszText, nMaxLen); ATF_FILEINFO *pATF = NULL; if (!GetFileDescriptor(&pATF, nFile, pnError)) return FALSE; if (!ReadDataRecord(pATF, pnError)) return FALSE; strncpyz(pszText, pATF->pszIOBuffer, nMaxLen); return TRUE; } //=============================================================================================== // FUNCTION: ATF_ReadDataRecordArray // PURPOSE: Reads an array of data values from the ATF file. // BOOL WINAPI ATF_ReadDataRecordArray(int nFile, int nCount, double *pdVals, char *pszComment, int nMaxLen, int *pnError) { ARRAYASSERT(pdVals, nCount); ARRAYASSERT(pszComment, nMaxLen); ATF_FILEINFO *pATF = NULL; if (!GetFileDescriptor(&pATF, nFile, pnError)) return FALSE; // Perform the necessary checks and read the data record if (!ReadDataRecord(pATF, pnError)) return FALSE; // Read out the requested numbers char *ps = pATF->pszIOBuffer; for (int i=0; ipszIOBuffer; for (int i=0; ihFile, &CreationTime, NULL, NULL)) { FILETIME LocalTime = { 0 }; VERIFY(FileTimeToLocalFileTime(&CreationTime, &LocalTime)); VERIFY(FileTimeToSystemTime(&LocalTime, &Time)); } int nYear = int(Time.wYear); if (plDate) *plDate = long(nYear*10000 + Time.wMonth*100 + Time.wDay); if (plTime) *plTime = long(((Time.wHour*60) + Time.wMinute)*60 + Time.wSecond); #endif return TRUE; } stimfit-0.13.13/src/libstfio/abf/axon/AxAtfFio32/axatffio32.h0000775000175000017500000001122112275677732020327 00000000000000/****************************************************************************\ * * * Written 1990 - 1996 by AXON Instruments Inc. * * * * This file is not protected by copyright. You are free to use, modify * * and copy the code in this file. * * * \****************************************************************************/ #ifndef INC_AXATFFIO32_H #define INC_AXATFFIO32_H #include "../Common/wincpp.hpp" #ifdef __cplusplus extern "C" { #endif /* __cplusplus */ #define VAL_EXTERNBUFSIZE 31 /* anybody calling methods using conversion */ // This is AXATFFIO32.H; a companion file to AXATFFIO32.CPP #define ATF_CURRENTVERSION 1.0 // Length required for I/O buffers #define ATF_MAXCOLUMNS 8000 // maximum size of read & write buffers (each can be this size) #define ATF_MAX_BUFFER_SIZE 65536 // Flags that may be combined and passed in the wFlags to ATF_OpenFile call #define ATF_WRITEONLY 0 #define ATF_READONLY 1 #define ATF_OVERWRTIFEXIST 2 #define ATF_APPENDIFEXIST 4 #define ATF_DONTWRITEHEADER 8 // Value returned as the file handle if the file could not be opened. #define ATF_INVALID_HANDLE -1 // Definitions for error results returned by AXATFFIO32 module #define ATF_SUCCESS 0 #define ATF_ERROR_NOFILE 1001 #define ATF_ERROR_TOOMANYFILES 1002 #define ATF_ERROR_FILEEXISTS 1003 #define ATF_ERROR_BADVERSION 1004 #define ATF_ERROR_BADFILENUM 1005 #define ATF_ERROR_BADSTATE 1006 #define ATF_ERROR_IOERROR 1007 #define ATF_ERROR_NOMORE 1008 #define ATF_ERROR_BADHEADER 1009 #define ATF_ERROR_NOMEMORY 1012 #define ATF_ERROR_TOOMANYCOLS 1013 #define ATF_ERROR_INVALIDFILE 1014 #define ATF_ERROR_BADCOLNUM 1015 #define ATF_ERROR_LINETOOLONG 1016 #define ATF_ERROR_BADFLTCNV 1017 #define ATF_ERROR_NOMESSAGESTR 2000 // These functions are not exported from the DLL version as they are called implicitly on load/unload. BOOL WINAPI ATF_Initialize(HINSTANCE hDLL); void WINAPI ATF_Cleanup(void); //---------------------- Exported Function Definitions ------------------------- BOOL WINAPI ATF_OpenFile(LPCSTR szFileName, UINT uFlags, int *pnColumns, int *pnFile, int *pnError); BOOL WINAPI ATF_CloseFile(int nFile); BOOL WINAPI ATF_SetSeperator(int nFile, BOOL bUseCommas, int *pnError); BOOL WINAPI ATF_IsAppending(int nFile); BOOL WINAPI ATF_RewindFile(int nFile, int *pnError); BOOL WINAPI ATF_CountDataLines(int nFile, long *plNumLines, int *pnError); BOOL WINAPI ATF_GetNumHeaders(int nFile, int *pnHeaders, int *pnError); BOOL WINAPI ATF_WriteHeaderRecord(int nFile, LPCSTR pszText, int *pnError); BOOL WINAPI ATF_SetColumnTitle(int nFile, LPCSTR pszText, int *pnError); BOOL WINAPI ATF_SetColumnUnits(int nFile, LPCSTR pszText, int *pnError); BOOL WINAPI ATF_WriteEndOfLine(int nFile, int *pnError); BOOL WINAPI ATF_WriteDataRecord(int nFile, LPCSTR pszText, int *pnError); BOOL WINAPI ATF_WriteDataComment(int nFile, LPCSTR pszText, int *pnError); BOOL WINAPI ATF_WriteDataRecordArray(int nFile, int nCount, double *pdVals, int *pnError); BOOL WINAPI ATF_WriteDataRecordArrayFloat(int nFile, int nCount, float *pfVals, int *pnError); BOOL WINAPI ATF_WriteDataRecord1(int nFile, double dNum1, int *pnError); BOOL WINAPI ATF_WriteDataRecord1Float(int nFile, float fNum1, int *pnError); BOOL WINAPI ATF_ReadHeaderLine(int nFile, char *psBuf, int nMaxLen, int *pnError); BOOL WINAPI ATF_ReadHeaderNoQuotes(int nFile, char *psBuf, int nMaxLen, int *pnError); BOOL WINAPI ATF_GetColumnTitle(int nFile, int nColumn, char *pszText, int nMaxTxt, int *pnError); BOOL WINAPI ATF_GetColumnUnits(int nFile, int nColumn, char *pszText, int nMaxTxt, int *pnError); BOOL WINAPI ATF_ReadDataRecord(int nFile, char *pszText, int nMaxLen, int *pnError); BOOL WINAPI ATF_ReadDataRecordArray(int nFile, int nCount, double *pdVals, char *pszComment, int nMaxLen, int *pnError); BOOL WINAPI ATF_ReadDataColumn(int nFile, int nColumn, double *pdVal, int *pnError); int WINAPI ATF_BuildErrorText(int nErrorNum, LPCSTR szFileName, char *sTxtBuf, int nMaxLen); BOOL WINAPI ATF_GetFileDateTime(int nFile, long *plDate, long *plTime, int *pnError); #ifdef __cplusplus } #endif #endif /* INC_AXATFFIO32_H */ stimfit-0.13.13/src/libstfio/abf/axon/Common/0000775000175000017500000000000012275713011015667 500000000000000stimfit-0.13.13/src/libstfio/abf/axon/Common/FileReadCache.cpp0000775000175000017500000001145312275677732020744 00000000000000//*********************************************************************************************** // // Copyright (c) 1996-1997 Axon Instruments. // All rights reserved. // //*********************************************************************************************** // MODULE: FileReadCache.cpp // PURPOSE: Contains class implementation for CFileReadCache. // AUTHOR: BHI Apr 1998 // #include "wincpp.hpp" #include "FileReadCache.hpp" #if !defined(_WINDOWS) || defined(__MINGW32__) || defined(__STF__) #define max(a,b) (((a) > (b)) ? (a) : (b)) #define min(a,b) (((a) < (b)) ? (a) : (b)) #endif //=============================================================================================== // PROCEDURE: CFileReadCache // PURPOSE: Constructor. // CFileReadCache::CFileReadCache() { //MEMBERASSERT(); // Initialize the internal variables. m_uItemSize = 0; // Size of all data items (structures) m_uItemCount = 0; // Number of items available m_llFileOffset = 0; // Start offset in the file. m_uCacheSize = 0; m_uCacheStart = 0; m_uCacheCount = 0; m_pItemCache.reset((BYTE*)0); } //=============================================================================================== // PROCEDURE: ~CFileReadCache // PURPOSE: Destructor. Closes the temporary file and deletes it. // CFileReadCache::~CFileReadCache() { //MEMBERASSERT(); m_File.Release(); // delete[] m_pItemCache; // m_pItemCache = NULL; } //=============================================================================================== // PROCEDURE: Initialize // PURPOSE: Gets a unique filename and opens it as a temporary file. // BOOL CFileReadCache::Initialize(UINT uItemSize, UINT uCacheSize, FILEHANDLE hFile, LONGLONG llOffset, UINT uItems ) { //MEMBERASSERT(); //ASSERT(uItems > 0); m_uItemSize = uItemSize; m_uCacheSize = min(uCacheSize, uItems); m_uItemCount = uItems; m_llFileOffset = llOffset; m_File.SetFileHandle(hFile); m_uCacheSize = uCacheSize; m_uCacheStart = 0; m_uCacheCount = 0; m_pItemCache.reset(new BYTE[uItemSize * uCacheSize]); return (m_pItemCache.get() != NULL); } //=============================================================================================== // PROCEDURE: Get // PURPOSE: Retrieves one or more ITEMs from the virtualized array. // BOOL CFileReadCache::Get( UINT uFirstEntry, void *pvItems, UINT uEntries ) { //MEMBERASSERT(); //ASSERT(m_File.IsOpen()); //ASSERT(uFirstEntry+uEntries <= GetCount()); //ASSERT(uEntries > 0); BYTE *pItems = (BYTE *)pvItems; //ARRAYASSERT(pItems, uEntries * m_uItemSize); while (uEntries) { // Make sure that the first item is in the cache. if (!LoadCache(uFirstEntry)) return FALSE; // Calculate which portion of the cache we want. UINT uStart = uFirstEntry - m_uCacheStart; UINT uCopy = m_uCacheStart + m_uCacheCount - uFirstEntry; if (uCopy > uEntries) uCopy = uEntries; // Copy the data out. UINT uBytes = uCopy * m_uItemSize; memcpy(pItems, m_pItemCache.get() + uStart * m_uItemSize, uBytes); // Update the pointers. pItems += uBytes; uEntries -= uCopy; uFirstEntry += uCopy; } return TRUE; } //=============================================================================================== // PROCEDURE: Get // PURPOSE: Get a pointer to one entry in the cache. // void *CFileReadCache::Get( UINT uEntry ) { //MEMBERASSERT(); //ASSERT(m_File.IsOpen()); //ASSERT(uEntry < GetCount()); // Make sure that the item is in the cache. if (!LoadCache(uEntry)) return NULL; // return a pointer to the item. return m_pItemCache.get() + (uEntry - m_uCacheStart) * m_uItemSize; } //=============================================================================================== // PROCEDURE: LoadCache // PURPOSE: If an entry is not in the cache, the cache is reloaded from disk. // BOOL CFileReadCache::LoadCache(UINT uEntry) { //MEMBERASSERT(); //ASSERT(m_File.IsOpen()); if ((uEntry >= m_uCacheStart) && (uEntry < m_uCacheStart+m_uCacheCount)) return TRUE; // Set the cache at the start of the cache size block that includes the requested item m_uCacheStart = uEntry - (uEntry % m_uCacheSize); m_uCacheCount = min(m_uItemCount-m_uCacheStart, m_uCacheSize); // seek to the start point. if (!m_File.Seek(m_uCacheStart * m_uItemSize + m_llFileOffset, FILE_BEGIN)) return FALSE; // Read the items from the file. return m_File.Read(m_pItemCache.get(), m_uCacheCount * m_uItemSize); } stimfit-0.13.13/src/libstfio/abf/axon/Common/resource.h0000775000175000017500000000145112275677732017636 00000000000000//{{NO_DEPENDENCIES}} // Microsoft Developer Studio generated include file. // Used by axabffio32.rc // #define IDS_EPITAGHEADINGS 1 #define IDS_CONTTAGHEADINGS 2 #define IDS_NONE 3 #define IDS_ENOMESSAGESTR 4 #define IDS_MATHCHANNEL 5 #define IDS_CANNOTLOAD 6 #define IDD_VOICETAGCLEANUP 119 #define IDC_PROGRESS 1001 #define IDC_TAGNUMBER 2053 // Next default values for new objects // #ifdef APSTUDIO_INVOKED #ifndef APSTUDIO_READONLY_SYMBOLS #define _APS_NEXT_RESOURCE_VALUE 105 #define _APS_NEXT_COMMAND_VALUE 40001 #define _APS_NEXT_CONTROL_VALUE 1002 #define _APS_NEXT_SYMED_VALUE 101 #endif #endif stimfit-0.13.13/src/libstfio/abf/axon/Common/axodebug.h0000775000175000017500000003230112275677732017603 00000000000000//****************************************************************************** // // Copyright (c) 1993-1997 Axon Instruments. // All rights reserved. // //****************************************************************************** // HEADER: AXODEBUG.H // PURPOSE: Contains utility macros and defines for Axon development debugging. // AUTHOR: BHI Oct 1993 // // Debugging functions in WINDOWS.H // BOLL WINAPI IsWindow(HWND hWnd); // BOOL WINAPI IsGDIObject(HGDIOBJ hobj); // BOOL WINAPI IsBadReadPtr(const void *lp, UINT cb); // BOOL WINAPI IsBadWritePtr(void *lp, UINT cb); // BOOL WINAPI IsBadHugeReadPtr(const void _huge* lp, DWORD cb); // BOOL WINAPI IsBadHugeWritePtr(void _huge* lp, DWORD cb); // BOOL WINAPI IsBadCodePtr(FARPROC lpfn); // BOOL WINAPI IsBadStringPtr(const void *lpsz, UINT cchMax); // void WINAPI FatalExit(int nCode); // (nCode = -1 -> stack overflow) // void WINAPI FatalAppExit(UINT, LPCSTR); // void WINAPI DebugBreak(void); // void WINAPI OutputDebugString(LPCSTR); #ifndef __AXODEBUG_H__ #define __AXODEBUG_H__ #include #if defined(__WIN32__) && !defined(__MINGW32__) #include #endif #ifdef __cplusplus extern "C" { #endif // Setup the debug reporting callback. void AXODBG_Initialize(void); // Protected call to DebugBreak() that only breaks if a debugger is running. BOOL AXODBG_DebugBreak(void); // Prints a printf formatted string to the debug context. #ifdef __MINGW32__ int AXODBG_printf(char *lpsz, ... ); #else int cdecl AXODBG_printf(char *lpsz, ... ); #endif // Set a prefix string used for all subsequent calls to AXODBG_printf() void AXODBG_SetTracePrefix(char const * szNewTracePrefix); // You can set the prefix to anything, but usually you will want to set it to include the EXE and/or DLL name. // This function sets the prefix to "{App=foo} {Mod=bar} " // Call this function once from within your DllMain(), WinMain() or CWinApp::InitInstance() void AXODBG_SetTracePrefixFromModuleHandle(HMODULE mod_handle); // Prints a textual description of a WIN32 system error to the debug context. int AXODBG_ShowSystemError(DWORD dwSystemError); UINT AXODBG_GetSystemErrorText(DWORD dwSystemError, LPSTR pszBuf, UINT uMaxLen); // Returns TRUE if the given pointer is aligned on a multiple of the passed data size. BOOL AXODBG_IsAligned( void *pv, UINT uDataSize ); // Returns TRUE if the given pointer is not on the stack (rough check). // Typically this function should be used in the constructor of large objects to check // that they are not being allocated on the stack. // e.g. // CSomeObject::CSomeObject() // { // MEMBERASSERT(); // ASSERT_NOTONSTACK(this); // } BOOL AXODBG_NotOnStack( void *pv ); // Assertion processing. void AXODBG_assert(LPCSTR psExp, LPCSTR psFile, int nLine); void AXODBG_ErrorMsg(LPCSTR psFile, int nLine, LPCSTR pszFormat, ...); void AXODBG_SystemErrorMsg(DWORD dwSystemError, LPCSTR psFile, int nLine); // Define our own ASSERT macro that is only compiled into a _DEBUG build. // This gives us more control over where the error output gets displayed // than the default runtime version. #if !defined(ASSERT) #ifdef _STFDEBUG /* #define ASSERT(exp) (void)( (exp) || (AXODBG_assert(#exp, __FILE__, __LINE__), 0) )*/ #define ASSERT(exp) assert(exp) #else // #define ASSERT(exp) ((void)0) #define ASSERT(exp) assert(exp) #endif #endif // ASSERT // // The ERRORMSG macros are like a combination of an ASSERT and a TRACE macro. // They are typically useful for marking a code path that should never get executed // (e.g. default clause of switch statement) with a debug time message and the // option to break to the debugger. // #if !defined(ERRORMSG) #ifdef _STFDEBUG #define ERRORMSG(msg) AXODBG_ErrorMsg(__FILE__, __LINE__, msg) #define ERRORMSG1(msg,a) AXODBG_ErrorMsg(__FILE__, __LINE__, msg, a) #define ERRORMSG2(msg,a,b) AXODBG_ErrorMsg(__FILE__, __LINE__, msg, a, b) #define ERRORMSG3(msg,a,b,c) AXODBG_ErrorMsg(__FILE__, __LINE__, msg, a, b, c) #define ERRORMSG4(msg,a,b,c,d) AXODBG_ErrorMsg(__FILE__, __LINE__, msg, a, b, c, d) #define ERRORMSG5(msg,a,b,c,d,e) AXODBG_ErrorMsg(__FILE__, __LINE__, msg, a, b, c, d, e) #else #define ERRORMSG(msg) ((void)0) #define ERRORMSG1(msg,a) ((void)0) #define ERRORMSG2(msg,a,b) ((void)0) #define ERRORMSG3(msg,a,b,c) ((void)0) #define ERRORMSG4(msg,a,b,c,d) ((void)0) #define ERRORMSG5(msg,a,b,c,d,e) ((void)0) #endif #endif // ASSERT #if defined(_WINDOWS) && !defined(__MINGW32__) #define HWNDASSERT(hWnd) ASSERT(IsWindow(hWnd)) #define IsBadPtr(p) IsBadWritePtr((void *)(p), sizeof(*(p))) #define IsBadArray(p,n) IsBadWritePtr((void *)(p), sizeof(*(p))*(n)) #define RPTRASSERT(p) ASSERT(!IsBadReadPtr((const void *)(p), sizeof(*(p)))) #define FNPTRASSERT(p) ASSERT(!IsBadCodePtr((FARPROC)(p))) #define LPSZASSERT(p) ASSERT(!IsBadStringPtr(p, (UINT)(-1))) #else #define IsBadPtr(p) (p==NULL) #define IsBadArray(p,n) IsBadPtr(p) #define RPTRASSERT(p) ASSERT(!IsBadPtr(p)) #define FNPTRASSERT(p) ASSERT(!IsBadPtr(p)) #define LPSZASSERT(p) ASSERT(!IsBadPtr(p)) #endif #define WPTRASSERT(p) ASSERT(!IsBadPtr(p)) #define MEMBERASSERT() WPTRASSERT(this) #define ARRAYASSERT(p,n) ASSERT(!IsBadArray(p, n)) //================================================================================================================== // MACRO: // RARRAYASSERT(p,n) // WARRAYASSERT(p,n) // PURPOSE: // Validate an array by checking the caller has read access to the array. // PARAMETERS: // p The array // n The number of elements in the array (NOT the size in bytes) // USAGE: // int array[10]; // RARRAYASSERT(array, 10); #if defined(_WINDOWS) && !defined(__MINGW32__) #define RARRAYASSERT(p,n) ASSERT( ((p) != NULL) && !IsBadReadPtr( (const void *)(p), sizeof(*(p))*(n) ) ) #define WARRAYASSERT(p,n) ASSERT( ((p) != NULL) && !IsBadWritePtr( (void *)(p), sizeof(*(p))*(n) ) ) #else #define RARRAYASSERT(p,n) ASSERT(!IsBadPtr(p)) #define WARRAYASSERT(p,n) ASSERT(!IsBadPtr(p)) #endif //================================================================================================================== // VERIFY is an ASSERT macro that always evaluates the given expression, but // only actually ASSERT's in a DEBUG build. #if !defined(VERIFY) #ifdef _STFDEBUG #define VERIFY(exp) ASSERT(exp) #else #define VERIFY(exp) (exp) #endif #endif //================================================================================================================== // The DEBUG_ONLY macro only expands out the expression in a DEBUG build. #if !defined(DEBUG_ONLY) #ifdef _STFDEBUG #define DEBUG_ONLY(exp) (exp) #else #define DEBUG_ONLY(exp) ((void)0) #endif #endif //================================================================================================================== // Trace functions that are only expanded for debug builds and when the AXODBG_TRACE flag is set. #if !defined(TRACE) #if (defined(_STFDEBUG) || defined(AXODBG_TRACE)) #define TRACE(s) AXODBG_printf(s) #define DLLTRACE(s) AXODBG_printf(s) #define TRACE1(s, a) AXODBG_printf(s, a) #define TRACE2(s, a, b) AXODBG_printf(s, a, b) #define TRACE3(s, a, b, c) AXODBG_printf(s, a, b, c) #define TRACE4(s, a, b, c, d) AXODBG_printf(s, a, b, c, d) #define TRACE5(s, a, b, c, d, e) AXODBG_printf(s, a, b, c, d, e) #else #define TRACE(s) ((void)0) #define DLLTRACE(s) ((void)0) #define TRACE1(s, a) ((void)0) #define TRACE2(s, a, b) ((void)0) #define TRACE3(s, a, b, c) ((void)0) #define TRACE4(s, a, b, c, d) ((void)0) #define TRACE5(s, a, b, c, d, e) ((void)0) #endif #endif #define TRACE_INT(e) TRACE1(#e "=%d\n", e) #define TRACE_FLOAT(e) TRACE1(#e "=%g\n", e) #define TRACE_STRING(e) TRACE1(#e "=%s\n", e) //================================================================================================================== // SHOW_SYSTEM_ERROR will only dump a text description of a system error in a DEBUG build. // #ifdef _STFDEBUG #define SHOW_SYSTEM_ERROR(dwError) AXODBG_ShowSystemError(dwError) #else #define SHOW_SYSTEM_ERROR(dwError) ((void)0) #endif //================================================================================================================== // VERIFY_SYSTEM_CALL will only dump a text description of a system error in a DEBUG build. // #ifdef _STFDEBUG #define VERIFY_SYSTEM_CALL(exp) (exp || (AXODBG_SystemErrorMsg(0, __FILE__, __LINE__), 0)) #else #define VERIFY_SYSTEM_CALL(exp) (exp) #endif //================================================================================================================== // ASSERT_ISALIGNED will throw an assertion error if the pointer is not aligned on a boundary of its data type. // #ifdef _STFDEBUG #define ASSERT_ISALIGNED(p) ASSERT(AXODBG_IsAligned(p, sizeof(*p))) #define ASSERT_NOTONSTACK(p) ASSERT(AXODBG_NotOnStack(p)) #else #define ASSERT_ISALIGNED(p) ((void)0) #define ASSERT_NOTONSTACK(p) ((void)0) #endif //================================================================================================================== // The following macros set and clear, respectively, given bits // of the C runtime library debug flag, as specified by a bitmask. // // Valid flags include: (default value) // _CRTDBG_ALLOC_MEM_DF (on) // ON: Enable debug heap allocations and use of memory block type identifiers, such as _CLIENT_BLOCK. // OFF: Add new allocations to heap's linked list, but set block type to _IGNORE_BLOCK. // _CRTDBG_CHECK_ALWAYS_DF (off) // ON: Call _CrtCheckMemory at every allocation and deallocation request. // OFF: _CrtCheckMemory must be called explicitly. // _CRTDBG_CHECK_CRT_DF (off) // ON: Include _CRT_BLOCK types in leak detection and memory state difference operations. // OFF: Memory used internally by the run-time library is ignored by these operations. // _CRTDBG_DELAY_FREE_MEM_DF (off) // ON: Keep freed memory blocks in the heap's linked list, assign them the _FREE_BLOCK type, and fill them with the byte value 0xDD. // OFF: Do not keep freed blocks in the heap's linked list. // _CRTDBG_LEAK_CHECK_DF (off) // ON: Perform automatic leak checking at program exit via a call to _CrtDumpMemoryLeaks and generate an error report if the application failed to free all the memory it allocated. // OFF: Do not automatically perform leak checking at program exit. // #ifdef _STFDEBUG #define SET_CRT_DEBUG_FIELD(a) \ _CrtSetDbgFlag((a) | _CrtSetDbgFlag(_CRTDBG_REPORT_FLAG)) #define CLEAR_CRT_DEBUG_FIELD(a) \ _CrtSetDbgFlag(~(a) & _CrtSetDbgFlag(_CRTDBG_REPORT_FLAG)) #else #define SET_CRT_DEBUG_FIELD(a) ((void)0) #define CLEAR_CRT_DEBUG_FIELD(a) ((void)0) #endif //================================================================================================================== // HEAPASSERT checks the integrity of the heap managed by the run-time library. // #ifdef _STFDEBUG #define HEAPASSERT() ASSERT(_CrtCheckMemory()) #else #define HEAPASSERT() ((void)0) #endif //================================================================================================================== // Flags supported by AXODBG_SetDebugFlag. #define AXODBG_REPORT_FLAG 0x80000000 // If this flag is set the current flags are returned. #define AXODBG_BREAK_ON_ASSERT 0x00000001 // If set, assertion failures will immediately break to the debugger. // Function to set/get debugging flags modeled after _CrtSetDbgFlag(). DWORD AXODBG_SetDebugFlag(DWORD dwFlags); #ifdef _STFDEBUG #define AXODBG_SET_DEBUG_FIELD(a) \ AXODBG_SetDebugFlag((a) | AXODBG_SetDebugFlag(AXODBG_REPORT_FLAG)) #define AXODBG_CLEAR_DEBUG_FIELD(a) \ AXODBG_SetDebugFlag(~(a) & AXODBG_SetDebugFlag(AXODBG_REPORT_FLAG)) #else #define AXODBG_SET_DEBUG_FIELD(a) ((void)0) #define AXODBG_CLEAR_DEBUG_FIELD(a) ((void)0) #endif //================================================================================================================== // Debug time only call to AXODBG_DebugBreak() #ifdef _STFDEBUG #define AXODBG_DEBUGBREAK() AXODBG_DebugBreak() #else #define AXODBG_DEBUGBREAK() ((BOOL)FALSE) #endif #ifdef __cplusplus } #endif #ifdef __cplusplus //================================================================================================================== // Compile time assert for static expressions // (e.g. STATIC_ASSERT(sizeof(MyStruct)==256); ) // #define STATIC_ASSERT(expr) C_ASSERT(expr) #endif #endif /* __AXODEBUG_H__ */ stimfit-0.13.13/src/libstfio/abf/axon/Common/colors.h0000775000175000017500000000354712275677732017320 00000000000000//**************************************************************************************** // // Copyright (c) 1993-1997 Axon Instruments. // All rights reserved. // //**************************************************************************************** // HEADER: COLORS.H // PURPOSE: Contains RGB definitions for VGA solid colors. #ifndef __COLORS_H__ #define __COLORS_H__ #ifndef RGB #define RGB(r,g,b) ((DWORD)(((BYTE)(r)|((WORD)(g)<<8))|(((DWORD)(BYTE)(b))<<16))) #endif // // MS name #ifndef RGB_BLACK #define RGB_WHITE RGB(255,255,255) // White #define RGB_VLTGRAY RGB(224,224,224) #define RGB_LTGRAY RGB(192,192,192) // Silver #define RGB_DKGRAY RGB(128,128,128) // Gray #define RGB_VDKGRAY RGB(96,96,96) #define RGB_BLACK RGB(0,0,0) // Black #define RGB_VLTYELLOW RGB(255,255,192) // #define RGB_LTYELLOW RGB(255,255,128) // #define RGB_YELLOW RGB(255,255,0) // Yellow #define RGB_ORANGE RGB(255,128,0) // ???? #define RGB_DKYELLOW RGB(128,128,0) // Olive? #define RGB_BLUE RGB(0,0,255) // Blue #define RGB_LTBLUE RGB(0,255,255) // Cyan #define RGB_DKBLUE RGB(0,0,128) // Navy #define RGB_BLUEGRAY RGB(0,128,128) // Teal #define RGB_AQUAMARINE RGB(64,128,128) // #define RGB_PURPLE RGB(64,0,128) // #define RGB_DKRED RGB(128,0,0) // Maroon #define RGB_MAUVE RGB(128,0,128) // Purple #define RGB_RED RGB(255,0,0) // Red #define RGB_PINK RGB(255,0,128) // ???? #define RGB_LTPINK RGB(255,0,255) // Magenta or Fuschia #define RGB_GREEN RGB(0,255,0) // Lime #define RGB_DKGREEN RGB(0,128,0) // MS-Green #endif // RGB_BLACK #endif /* __COLORS_H__ */ stimfit-0.13.13/src/libstfio/abf/axon/Common/ArrayPtr.hpp0000775000175000017500000004144312275677732020120 00000000000000//*********************************************************************************************** // // Copyright (c) 1996-1997 Axon Instruments. // All rights reserved. // //*********************************************************************************************** // HEADER: ARRAYPTR.HPP // PURPOSE: Define the template class CArrayPtr // AUTHOR: BHI Sep 1996 // // #ifndef INC_ARRAYPTR_HPP #define INC_ARRAYPTR_HPP #pragma once #include #include #if defined(__UNIX__) || defined(__STF__) #define max(a,b) (((a) > (b)) ? (a) : (b)) #define min(a,b) (((a) < (b)) ? (a) : (b)) #endif //*********************************************************************************************** // CLASS: CArrayPtr // PURPOSE: A smart pointer class for arrays of objects or primitive ITEMs. // template class CArrayPtr { private: // Private data. boost::shared_array m_pArray; private: // Prevent copy constructors and operator=(). CArrayPtr(const CArrayPtr &); const CArrayPtr &operator=(const CArrayPtr &); public: // Public member functions. // Constructors & destructor. See notes below. CArrayPtr(ITEM *pItem = NULL); CArrayPtr(UINT uCount); ~CArrayPtr(); // Allocation and destruction of memory pointed to by this object. BOOL Alloc(UINT uCount); /* BOOL Realloc(UINT uOldCount, UINT uNewCount, BOOL bZero=FALSE); BOOL Clone(const ITEM *pItem, UINT uCount); */ void Free(); // Accessor functions to get at the wrapped array. operator ITEM *() const; ITEM *Get() const; /* // Destroys the held array and replaces it with another. void Set(ITEM *); // Non-destructive release of the held pointer. ITEM *Release(); // Zero the held array from 0 for uCount items. void Zero(UINT uCount); // Sorts the data held in the pointer according to a user-supplied callback. void Sort(UINT uCount, int (__cdecl *FnCompare )(const void *elem1, const void *elem2 )); */ }; //================================================================================================ // FUNCTION: Constructor // PURPOSE: Create a new object that wraps a passed pointer. // NOTES: If the passed pointer is non-NULL, it *MUST* have been created on the // heap using the array allocater new[]. // Unfortunately there is no reliable way to ASSERT this. // // The definition of this constructor contains a default parameter of NULL // so that CArrayPtr objects can be created that do not hold anything. // template inline CArrayPtr::CArrayPtr/*CSH*/(ITEM *pItem) { // MEMBERASSERT(); ASSERT_NOTONSTACK(pItem); m_pArray = pItem; } //================================================================================================ // FUNCTION: Constructor // PURPOSE: Create a new object and allocate a buffer of the passed size. // template inline CArrayPtr::CArrayPtr/*CSH*/(UINT uCount) { // MEMBERASSERT(); m_pArray.reset((ITEM*)0); Alloc(uCount); } //================================================================================================ // FUNCTION: Destructor // PURPOSE: Frees a held pointer if non-NULL. // template inline CArrayPtr::~CArrayPtr/*CSH*/() { // MEMBERASSERT(); // delete[] m_pArray; // m_pArray = NULL; } //================================================================================================ // FUNCTION: Alloc // PURPOSE: Frees any held pointer and allocates a new array of the wrapped ITEM. // template inline BOOL CArrayPtr::Alloc(UINT uCount) { // MEMBERASSERT(); // Free any existing array. Free(); // Return now if nothing is to be allocated. if (uCount == 0) return TRUE; // Allocate the new array. m_pArray.reset(new ITEM[uCount]); return (m_pArray!=NULL); } /* //================================================================================================ // FUNCTION: Realloc // PURPOSE: Reallocates the held pointer keeping the held data. // template inline BOOL CArrayPtr::Realloc(UINT uOldCount, UINT uNewCount, BOOL bZero) { MEMBERASSERT(); ARRAYASSERT(m_pArray, uOldCount); CArrayPtr pNewArray; if (uNewCount && !pNewArray.Alloc(uNewCount)) return FALSE; for (UINT i=0; i inline BOOL CArrayPtr::Clone(const ITEM *pItem, UINT uCount) { MEMBERASSERT(); // Reallocate the held pointer. if (!Alloc(uCount)) return FALSE; // Check that we have valid parameters. ARRAYASSERT(pItem, uCount); // If this object was only for wrapping primitive types, a memcpy call // would be most efficient for cloning, but this is inappropriate for // arrays of objects. // memcpy(m_pArray, pItem, uCount*sizeof(ITEM)); // Use a for loop to copy the array into the new buffer. for (UINT i=0; i inline void CArrayPtr::Free() { // MEMBERASSERT(); m_pArray.reset((ITEM*)0); } //================================================================================================ // FUNCTION: Get // PURPOSE: Returns the held pointer without giving up ownership of it. // template inline ITEM *CArrayPtr::Get() const { // MEMBERASSERT(); return m_pArray.get(); } /* //================================================================================================ // FUNCTION: Set // PURPOSE: Destroys the held array and replaces it with another. // template inline void CArrayPtr::Set(ITEM *pItem) { ASSERT_NOTONSTACK(pItem); Free(); m_pArray = pItem; } */ //================================================================================================ // FUNCTION: Overloaded cast operator // PURPOSE: Returns the held pointer without giving up ownership of it. // template inline CArrayPtr::operator ITEM *() const { // MEMBERASSERT(); return Get(); } /* //================================================================================================ // FUNCTION: Release // PURPOSE: Returns the held pointer, giving up ownership of it. // template inline ITEM *CArrayPtr::Release() { MEMBERASSERT(); ITEM *rval = m_pArray; m_pArray = NULL; return rval; } //================================================================================================ // FUNCTION: Zero // PURPOSE: Zero's out the held pointer from item 0 for uCount items. // template inline void CArrayPtr::Zero(UINT uCount) { MEMBERASSERT(); ARRAYASSERT(m_pArray, uCount); memset(m_pArray, 0, uCount*sizeof(ITEM)); } //================================================================================================ // FUNCTION: Sort // PURPOSE: Sorts the data held in the pointer according to a user-supplied callback. // template inline void CArrayPtr::Sort(UINT uCount, int (__cdecl *FnCompare )(const void *elem1, const void *elem2 )) { MEMBERASSERT(); ARRAYASSERT(m_pArray, uCount); qsort(m_pArray, uCount, sizeof(ITEM), FnCompare); } */ /* //################################################################################################ //################################################################################################ //### //### CLASS: CArrayPtrEx //### PURPOSE: Extended smart pointer that also holds the count of objects held. //### //################################################################################################ //################################################################################################ // *********************************************************************************************** // CLASS: CArrayPtrEx // PURPOSE: A vector class for arrays of objects or primitive ITEMs. // template class CArrayPtrEx { private: // Private data. ITEM *m_pArray; UINT m_uCount; private: // Prevent copy constructors and operator=(). CArrayPtrEx(const CArrayPtrEx &); const CArrayPtrEx &operator=(const CArrayPtrEx &); public: // Public member functions. // Constructors & destructor. See notes below. CArrayPtrEx(); CArrayPtrEx(UINT uCount); ~CArrayPtrEx(); // Allocation and destruction of memory pointed to by this object. BOOL Alloc(UINT uCount); BOOL Realloc(UINT uNewCount, BOOL bZero=FALSE); BOOL Clone(const ITEM *pItem, UINT uCount); void Free(); // Accessor functions to get at the wrapped array. operator ITEM *() const; ITEM *Get() const; // Destroys the held array and replaces it with another. void Set(ITEM *, UINT uCount); // Non-destructive release of the held pointer. ITEM *Release(); // Returns number of items held. UINT GetCount() const; // Zero the held array. void Zero(); // Sorts the data held in the pointer according to a user-supplied callback. void Sort(int (__cdecl *FnCompare )(const void *elem1, const void *elem2 )); }; //================================================================================================ // FUNCTION: Constructor // PURPOSE: Create a new object that wraps a passed pointer. // NOTES: If the passed pointer is non-NULL, it *MUST* have been created on the // heap using the array allocater new[]. // Unfortunately there is no reliable way to ASSERT this. // // The definition of this constructor contains a default parameter of NULL // so that CArrayPtrEx objects can be created that do not hold anything. // template inline CArrayPtrEx::CArrayPtrEx() { MEMBERASSERT(); m_pArray = NULL; m_uCount = 0; } //================================================================================================ // FUNCTION: Constructor // PURPOSE: Create a new object and allocate a buffer of the passed size. // template inline CArrayPtrEx::CArrayPtrEx(UINT uCount) { MEMBERASSERT(); m_pArray = NULL; m_uCount = 0; Alloc(uCount); } //================================================================================================ // FUNCTION: Destructor // PURPOSE: Frees a held pointer if non-NULL. // template inline CArrayPtrEx::~CArrayPtrEx() { MEMBERASSERT(); Free(); } //================================================================================================ // FUNCTION: Alloc // PURPOSE: Frees any held pointer and allocates a new array of the wrapped ITEM. // template inline BOOL CArrayPtrEx::Alloc(UINT uCount) { MEMBERASSERT(); // Check if we already have the right size. if (m_uCount == uCount) return TRUE; // Free any existing array. Free(); // Return now if nothing is to be allocated. if (uCount == 0) return TRUE; // Allocate the new array. m_pArray = new ITEM[uCount]; if (m_pArray) m_uCount = uCount; return (m_pArray!=NULL); } //================================================================================================ // FUNCTION: Realloc // PURPOSE: Reallocates the held pointer keeping the held data. // template inline BOOL CArrayPtrEx::Realloc(UINT uNewCount, BOOL bZero) { MEMBERASSERT(); ARRAYASSERT(m_pArray, m_uCount); if (m_uCount == uNewCount) return TRUE; UINT uOldCount = m_uCount; CArrayPtrEx pNewArray; if (uNewCount && !pNewArray.Alloc(uNewCount)) return FALSE; for (UINT i=0; i inline BOOL CArrayPtrEx::Clone(const ITEM *pItem, UINT uCount) { MEMBERASSERT(); // Reallocate the held pointer. if (!Alloc(uCount)) return FALSE; // Check that we have valid parameters. ARRAYASSERT(pItem, uCount); // If this object was only for wrapping primitive types, a memcpy call // would be most efficient for cloning, but this is inappropriate for // arrays of objects. // memcpy(m_pArray, pItem, uCount*sizeof(ITEM)); // Use a for loop to copy the array into the new buffer. for (UINT i=0; i inline void CArrayPtrEx::Free() { MEMBERASSERT(); delete[] m_pArray; m_pArray = NULL; m_uCount = 0; } //================================================================================================ // FUNCTION: Get // PURPOSE: Returns the held pointer without giving up ownership of it. // template inline ITEM *CArrayPtrEx::Get() const { MEMBERASSERT(); return m_pArray; } //================================================================================================ // FUNCTION: GetCount // PURPOSE: Returns the count of items held. // template inline UINT CArrayPtrEx::GetCount() const { MEMBERASSERT(); return m_uCount; } //================================================================================================ // FUNCTION: Set // PURPOSE: Destroys the held array and replaces it with another. // template inline void CArrayPtrEx::Set(ITEM *pItem, UINT uCount) { ASSERT_NOTONSTACK(pItem); Free(); m_pArray = pItem; m_uCount = uCount; } //================================================================================================ // FUNCTION: Overloaded cast operator // PURPOSE: Returns the held pointer without giving up ownership of it. // template inline CArrayPtrEx::operator ITEM *() const { MEMBERASSERT(); return Get(); } //================================================================================================ // FUNCTION: Release // PURPOSE: Returns the held pointer, giving up ownership of it. // template inline ITEM *CArrayPtrEx::Release() { MEMBERASSERT(); ITEM *rval = m_pArray; m_pArray = NULL; m_uCount = 0; return rval; } //================================================================================================ // FUNCTION: Zero // PURPOSE: Zero's out the held pointer from item 0 for uCount items. // template inline void CArrayPtrEx::Zero() { MEMBERASSERT(); ARRAYASSERT(m_pArray, m_uCount); memset(m_pArray, 0, m_uCount*sizeof(ITEM)); } //================================================================================================ // FUNCTION: Sort // PURPOSE: Sorts the data held in the pointer according to a user-supplied callback. // template inline void CArrayPtrEx::Sort(int (__cdecl *FnCompare )(const void *elem1, const void *elem2 )) { MEMBERASSERT(); ARRAYASSERT(m_pArray, m_uCount); qsort(m_pArray, m_uCount, sizeof(ITEM), FnCompare); } */ #endif // INC_ARRAYPTR_HPP stimfit-0.13.13/src/libstfio/abf/axon/Common/FileReadCache.hpp0000775000175000017500000000444412275677732020753 00000000000000//*********************************************************************************************** // // Copyright (c) 1996-1997 Axon Instruments. // All rights reserved. // //*********************************************************************************************** // HEADER: FileReadCache.HPP // PURPOSE: Contains class definition for CFileReadCache for creating and maintaining a BufferedArray array. // AUTHOR: BHI Dec 1996 // #ifndef INC_FILEREADCACHE_HPP #define INC_FILEREADCACHE_HPP #include "./../Common/FileIO.hpp" #include //----------------------------------------------------------------------------------------------- // CFileReadCache class definition class CFileReadCache { private: UINT m_uItemSize; // Size of all data items (structures) CFileIO m_File; // DOS file handle to the read-only data. UINT m_uItemCount; // Number of items available in the file LONGLONG m_llFileOffset; // Start offset in the file. UINT m_uCacheSize; UINT m_uCacheStart; UINT m_uCacheCount; boost::shared_array m_pItemCache; private: // Unimplemented default member functions. // Declare but don't define copy constructors to prevent use of defaults. CFileReadCache(const CFileReadCache &CS); const CFileReadCache &operator=(const CFileReadCache &CS); private: BOOL LoadCache(UINT uEntry); public: // Public member functions CFileReadCache(); ~CFileReadCache(); // Call this function to initialize the DTB and the temp file. BOOL Initialize(UINT uItemSize, UINT uCacheSize, FILEHANDLE hFile, LONGLONG llOffset, UINT uItems ); // Get one or more items from the array. BOOL Get( UINT uFirstEntry, void *pItem, UINT uEntries ); // Get a pointer to one entry in the cache. void *Get( UINT uEntry ); // Get the count of items in the file. UINT GetCount() const; }; //=============================================================================================== // PROCEDURE: GetCount // PURPOSE: Returns the current count of ITEMs, both cached and written to file. // inline UINT CFileReadCache::GetCount() const { // MEMBERASSERT(); return m_uItemCount; } #endif // INC_FILEREADCACHE_HPP stimfit-0.13.13/src/libstfio/abf/axon/Common/adcdac.h0000775000175000017500000000345512275677732017214 00000000000000/************************************************************************************************ ** ** Copyright (c) 1994-1997 Axon Instruments. ** All rights reserved. ** ************************************************************************************************* ** HEADER: ADCDAC.H ** PURPOSE: Contains #defines for working with ADC and DAC values. ** AUTHOR: BHI Jul 1994 */ #ifndef INC_ADCDAC_H #define INC_ADCDAC_H // // ADC values are 16 bit integers collected from Analog-to-Digital converters // #define ADC_MAX 32767 #define ADC_MIN -32768 typedef short ADC_VALUE; // // DAC values are 16 bit integers for output by Digital-to-Analog converters // #define DAC_MAX 32767 #define DAC_MIN -32768 typedef short DAC_VALUE; // // Define a linked list structure for holding acquisition buffers. // struct DATABUFFER { UINT uNumSamples; // Number of samples in this buffer. UINT uFlags; // Flags discribing the data buffer. ADC_VALUE *pnData; // The buffer containing the data. BYTE *psDataFlags; // Flags split out from the data buffer. DATABUFFER *pNextBuffer; // Next buffer in the list. DATABUFFER *pPrevBuffer; // Previous buffer in the list. }; typedef DATABUFFER *PDATABUFFER; // // Define a linked list structure for holding floating point acquisition buffers. // struct FLOATBUFFER { UINT uNumSamples; // Number of samples in this buffer. UINT uFlags; // Flags discribing the data buffer. float *pfData; // The buffer containing the data. FLOATBUFFER *pNextBuffer; // Next buffer in the list. FLOATBUFFER *pPrevBuffer; // Previous buffer in the list. }; typedef FLOATBUFFER *PFLOATBUFFER; #endif // INC_ADCDAC_H stimfit-0.13.13/src/libstfio/abf/axon/Common/FileIO.hpp0000775000175000017500000001261112275677732017456 00000000000000//*********************************************************************************************** // // Copyright (c) 1993-1997 Axon Instruments. // All rights reserved. // Permission is granted to freely to use, modify and copy the code in this file. // //*********************************************************************************************** // // MODULE: FileIO.HPP // PURPOSE: Contains the class definition for the CFileIO class, a simple wrapper // around the WIN32 file I/O API. // #ifndef INC_FileIO_HPP #define INC_FileIO_HPP #include "axodefn.h" #include "./../Common/wincpp.hpp" #include "./../AxAbfFio32/abffiles.h" // ABF file I/O API and error codes. #include "./../AxAbfFio32/csynch.hpp" // Virtual synch array object class CFileIO { private: // Member variables and constants. TCHAR m_szFileName[_MAX_PATH]; // The complete filename of the file FILEHANDLE m_hFileHandle; // The DOS file handle for data file DWORD m_dwLastError; // Error number for last error. private: // Prevent default copy constructor and operator=() CFileIO(const CFileIO &FI); const CFileIO &operator=(const CFileIO &FI); private: // Internal functions. BOOL SeekFailure(DWORD dwOffset); public: CFileIO(); CFileIO(FILEHANDLE hFile); #if !defined(_WINDOWS) CFileIO(HANDLE hFile); #endif ~CFileIO(); BOOL Create(LPCTSTR szFileName, BOOL bReadOnly, DWORD dwAttributes=FILE_ATTRIBUTE_NORMAL); BOOL CreateEx(LPCTSTR szFileName, DWORD dwDesiredAccess, DWORD dwShareMode, DWORD dwCreationDisposition, DWORD dwFlagsAndAttributes); BOOL Close(); /* BOOL IsOpen() const; BOOL Write(const void *pvBuffer, DWORD dwSizeInBytes, DWORD *pdwBytesWritten=NULL); */ BOOL Read(void *pvBuffer, DWORD dwSizeInBytes, DWORD *pdwBytesRead=NULL); BOOL Seek(LONGLONG lOffset, UINT uFlag=FILE_BEGIN, LONGLONG *plNewOffset=NULL); /* BOOL GetCurrentPosition(LONGLONG *plCurrentPosition); BOOL Flush(); BOOL SetEndOfFile(); */ LONGLONG GetFileSize(); /* BOOL GetFileTime( LPFILETIME pCreationTime, LPFILETIME pLastAccessTime=NULL, LPFILETIME pLastWriteTime=NULL); BOOL SetFileTime( LPFILETIME pCreationTime, LPFILETIME pLastAccessTime=NULL, LPFILETIME pLastWriteTime=NULL); BOOL GetFileInformation(LPBY_HANDLE_FILE_INFORMATION lpFileInformation); */ void SetFileHandle(FILEHANDLE hFile); FILEHANDLE GetFileHandle() const; LPCTSTR GetFileName() const; FILEHANDLE Release(); /* BOOL Duplicate(CFileIO *pNewFile, BOOL bInheritable=TRUE); BOOL SetInheritable(BOOL bInheritable=TRUE); */ BOOL SetLastError(); BOOL SetLastError(DWORD nError); DWORD GetLastError() const; }; //=============================================================================================== // FUNCTION: GetFileName // PURPOSE: Get the name of the file. // inline LPCTSTR CFileIO::GetFileName() const { // MEMBERASSERT(); return m_szFileName; } //=============================================================================================== // FUNCTION: GetFileHandle // PURPOSE: Returns the file handle opened in the object. // inline FILEHANDLE CFileIO::GetFileHandle() const { // MEMBERASSERT(); return m_hFileHandle; } #if 0 //=============================================================================================== // FUNCTION: IsOpen // PURPOSE: Returns TRUE if an open file handle is held. // inline BOOL CFileIO::IsOpen() const { MEMBERASSERT(); return (m_hFileHandle != INVALID_HANDLE_VALUE); } //=============================================================================================== // FUNCTION: SetEndOfFile // PURPOSE: Truncates the file to the current position. // inline BOOL CFileIO::SetEndOfFile() { MEMBERASSERT(); return ::SetEndOfFile(m_hFileHandle) ? TRUE : SetLastError(); } #endif //=============================================================================================== // CLASS: CFileIO_NoClose // PURPOSE: Derivation of CFileIO that does not close the file when destroyed. // NOTES: N.B. Not polymorphic -- do NOT use through base class pointer. // class CFileIO_NoClose : public CFileIO { private: // Prevent default copy constructor and operator=() CFileIO_NoClose(const CFileIO_NoClose &FI); const CFileIO_NoClose &operator=(const CFileIO_NoClose &FI); public: CFileIO_NoClose(HANDLE hFile); ~CFileIO_NoClose(); }; #if 0 //=============================================================================================== // CLASS: CFileIO_Pipe // PURPOSE: Class wrapper around a Win32 pipe. // NOTES: Poor encapsulation as internal CFileIO objects are returned. // class CFileIO_Pipe { private: CFileIO m_ReadPipe; CFileIO m_WritePipe; private: // Prevent default copy constructor and operator=() CFileIO_Pipe(const CFileIO_Pipe &); const CFileIO_Pipe &operator=(const CFileIO_Pipe &); public: CFileIO_Pipe(); ~CFileIO_Pipe(); BOOL Create(BOOL bInheritable); CFileIO *GetReadPipe(); CFileIO *GetWritePipe(); }; #endif #endif // INC_FileIO_HPP stimfit-0.13.13/src/libstfio/abf/axon/Common/unix.h0000775000175000017500000001540412275677732016775 00000000000000// Windows macros to compile on Unix machines. // Taken from MSDOS.H and from various wine headers. // Only the absolute minimum has been integrated. // 2007, CSH, University of Freiburg // Error return from SetFilePointer() #ifndef INVALID_SEEK_VALUE #define INVALID_SEEK_VALUE (0xFFFFFFFF) #endif #define FILE_NULL NULL #define IDS_ENOMESSAGESTR 4 #ifdef __cplusplus extern "C" { #endif #if defined(_WINDOWS) && !defined(__MINGW32__) #include #include typedef HANDLE FILEHANDLE; #include "resource.h" #define __LITTLE_ENDIAN__ #else #ifdef __APPLE__ #include #elif defined(__MINGW32__) #define __LITTLE_ENDIAN__ #else #include #endif #ifndef INVALID_HANDLE_VALUE #define INVALID_HANDLE_VALUE ((HANDLE)0xFFFFFFFF) #endif #include "../AxAbfFio32/AxAbffio32.h" #include // // Commonly used typedefs & constants from windows.h. // typedef unsigned char BYTE; typedef unsigned short WORD; typedef unsigned ABFLONG DWORD; typedef unsigned ABFLONG *LPDWORD; typedef unsigned int UINT; typedef int INT; typedef int BOOL; typedef long *PLONG; typedef unsigned char *LPBYTE; typedef void *LPVOID; typedef const void *LPCVOID; // // Basics // #ifndef VOID #define VOID void typedef char CHAR; typedef short SHORT; typedef long LONG; #endif // // UNICODE (Wide Character) types // #ifndef _MAC typedef wchar_t WCHAR; // wc, 16-bit UNICODE character #else // some Macintosh compilers don't define wchar_t in a convenient location, or define it as a char typedef unsigned short WCHAR; // wc, 16-bit UNICODE character #endif typedef WCHAR *PWCHAR; typedef WCHAR *LPWCH, *PWCH; typedef const WCHAR *LPCWCH, *PCWCH; typedef WCHAR *NWPSTR; typedef WCHAR *LPWSTR, *PWSTR; typedef const WCHAR *LPCWSTR, *PCWSTR; // // ANSI (Multi-byte Character) types // typedef CHAR *PCHAR; typedef CHAR *LPCH, *PCH; typedef const CHAR *LPCCH, *PCCH; typedef CHAR *NPSTR; typedef CHAR *LPSTR, *PSTR; typedef const CHAR *LPCSTR, *PCSTR; // // Neutral ANSI/UNICODE types and macros // #if !defined(_WINDOWS) || defined(UNICODE) || defined(__MINGW32__) // r_winnt #ifndef _TCHAR_DEFINED typedef WCHAR TCHAR, *PTCHAR; typedef WCHAR TBYTE , *PTBYTE ; #define _TCHAR_DEFINED #endif /* !_TCHAR_DEFINED */ typedef LPWSTR LPTCH, PTCH; typedef LPWSTR PTSTR, LPTSTR; typedef LPCWSTR LPCTSTR; typedef LPWSTR LP; #define __TEXT(quote) L##quote // r_winnt #else /* UNICODE */ // r_winnt #ifndef _TCHAR_DEFINED typedef char TCHAR, *PTCHAR; typedef unsigned char TBYTE , *PTBYTE ; #define _TCHAR_DEFINED #endif /* !_TCHAR_DEFINED */ typedef LPSTR LPTCH, PTCH; typedef LPSTR PTSTR, LPTSTR; typedef LPCSTR LPCTSTR; #define __TEXT(quote) quote // r_winnt #endif /* UNICODE */ // r_winnt typedef FILE* FILEHANDLE; // Handle declarations. typedef void *HANDLE; typedef HANDLE HINSTANCE; typedef HINSTANCE HMODULE; typedef void *LPOVERLAPPED; typedef void *LPSECURITY_ATTRIBUTES; typedef long long LONGLONG; typedef unsigned int UINT_PTR; #define DWORD_PTR UINT_PTR #define FILE_BEGIN 0 #define FILE_CURRENT 1 #define FILE_END 2 #define FILE_ATTRIBUTE_NORMAL 0x00000080 #define GENERIC_READ 0x80000000 #define GENERIC_WRITE 0x40000000 #define CREATE_NEW 1 #define CREATE_ALWAYS 2 #define OPEN_EXISTING 3 #define FILE_SHARE_READ 0x00000001L #define NO_ERROR 0 #define ERROR_HANDLE_EOF 38 #define TRUE 1 #define FALSE 0 #define LOBYTE(w) ((BYTE)((DWORD_PTR)(w) & 0xFF)) #define HIBYTE(w) ((BYTE)((DWORD_PTR)(w) >> 8)) #define LOWORD(l) ((WORD)((DWORD_PTR)(l) & 0xFFFF)) #define HIWORD(l) ((WORD)((DWORD_PTR)(l) >> 16)) #ifndef _MAX_PATH #define _MAX_DRIVE 3 #define _MAX_FNAME 256 #define _MAX_DIR _MAX_FNAME #define _MAX_EXT _MAX_FNAME #define _MAX_PATH 260 #endif #define ERROR_TOO_MANY_OPEN_FILES 4 // #define __stdcall __attribute__((__stdcall__)) #if !defined(__MINGW32__) #define __stdcall #endif // gcc uses cdecl as a standard: #define cdecl #define WINAPI __stdcall typedef struct _GUID { unsigned int Data1; unsigned short Data2; unsigned short Data3; unsigned char Data4[ 8 ]; } GUID; #define GUID_DEFINED void _splitpath(const char* inpath, char * drv, char * dir, char* fname, char * ext ); int _strnicmp( LPCSTR str1, LPCSTR str2, size_t n ); inline int strnicmp( const char* s1, const char* s2, size_t n ) { return _strnicmp( s1, s2, n ); } void _makepath( char * path, const char * drive, const char *directory, const char * filename, const char * extension ); #ifndef _FILETIME_ #define _FILETIME_ /* 64 bit number of 100 nanoseconds intervals since January 1, 1601 */ typedef struct _FILETIME { #ifdef __BIG_ENDIAN__ DWORD dwHighDateTime; DWORD dwLowDateTime; #else DWORD dwLowDateTime; DWORD dwHighDateTime; #endif } FILETIME, *PFILETIME, *LPFILETIME; #endif /* _FILETIME_ */ typedef struct _SYSTEMTIME{ WORD wYear; WORD wMonth; WORD wDayOfWeek; WORD wDay; WORD wHour; WORD wMinute; WORD wSecond; WORD wMilliseconds; } SYSTEMTIME, *PSYSTEMTIME, *LPSYSTEMTIME; #endif extern HINSTANCE g_hInstance; // // Function wrappers // int WINAPI AXODBG_printf(char *lpsz, ... ); BOOL WINAPI c_WriteFile( FILEHANDLE hFile, LPCVOID buffer, DWORD bytesToWrite, LPDWORD bytesWritten, LPOVERLAPPED overlapped ); FILEHANDLE WINAPI c_CreateFile( LPCSTR filename, DWORD access, DWORD sharing, LPSECURITY_ATTRIBUTES sa, DWORD creation, DWORD attributes_, HANDLE templ); DWORD WINAPI c_SetFilePointer( FILEHANDLE hFile, LONG distance, LONG *highword, DWORD method ); BOOL WINAPI c_ReadFile( FILEHANDLE hFile, LPVOID buffer, DWORD bytesToRead, LPDWORD bytesRead, LPOVERLAPPED overlapped ); DWORD WINAPI c_GetFileSize( FILEHANDLE hFile, LPDWORD filesizehigh ); BOOL WINAPI c_CloseHandle( FILEHANDLE handle ); INT WINAPI c_LoadString( HINSTANCE instance, UINT resource_id, LPSTR buffer, INT buflen ); #ifdef __cplusplus } #endif stimfit-0.13.13/src/libstfio/abf/axon/Common/wincpp.hpp0000775000175000017500000000130612275677732017646 00000000000000//********************************************************************************************** // // Copyright (c) 1993 Axon Instruments. // All rights reserved. // //********************************************************************************************** // HEADER: WINCPP.HPP // PURPOSE: Contains common includes. Used for generation of precompiled headers. // AUTHOR: BHI Nov 1993 // #include "../Common/axodefn.h" #include "../Common/axodebug.h" /* #include "../Common/colors.h" */ #include "../Common/adcdac.h" #include #include #include #include #include /* #include */ #include stimfit-0.13.13/src/libstfio/abf/axon/Common/axodefn.h0000775000175000017500000001443012275677732017434 00000000000000/************************************************************************************************ ** ** Copyright (c) 1993-1997 Axon Instruments. ** All rights reserved. ** ************************************************************************************************* ** HEADER: AXODEFN.H ** PURPOSE: Contains standard Axon definitions and prototypes. ** AUTHOR: BHI Oct 1993 ** NOTES: * The following compilers are supported: ** - Microsoft C/C++ (COMPILER = "Mircosoft") ** - Borland C/C++ (COMPILER = "Borland") ** * The following platforms are supported: ** - MSDOS (if _DOS #defined) ** - WIN32 (if _WIN32 #defined) */ #ifndef INC_AXODEFN_H #define INC_AXODEFN_H #ifdef __cplusplus extern "C" { #endif /* __cplusplus */ #undef COMPILER /*============================================================================================== ** Microsoft C compiler */ #ifdef _MSC_VER #ifndef __STF__ #define COMPILER "Microsoft" /* Pragmas to cutdown on MSVC warnings. */ #pragma warning(disable:4001) // warning C4001: nonstandard extension 'single line comment' was used #pragma warning(disable:4100) // warning C4100: 'lParam' : unreferenced formal parameter #pragma warning(disable:4206) // warning C4206: nonstandard extension used : translation unit is empty #pragma warning(disable:4505) // warning C4505: 'GetFont' : unreferenced local function has been removed #pragma warning(disable:4704) // warning C4704: 'AXODBG_WriteProtectSelector' : in-line assembler precludes global optimizations #pragma warning(disable:4705) // warning C4705: statement has no effect #pragma warning(disable:4710) // warning C4710: function 'FunctionName(void)' not expanded #if !defined(_M_IX86) && defined(_M_I86) #define _M_IX86 _M_I86 // Define the MSVC2x _M_IX86 symbol. #endif #if !defined(_M_I86) && defined(_M_IX86) #define _M_I86 _M_IX86 // Define the MSVC1x _M_I86 symbol. #endif #if !defined(_M_I86LM) && !defined(_WIN32) #error "ERROR: Large memory model must be used for 16 bit compiles." #endif #endif #endif /* _MSC_VER */ /*=============================================================================================== ** Borland C/C++ compiler. */ #ifdef __BORLANDC__ #define COMPILER "Borland" // Compatibility #defines for Borland C/C++ to behave like MSVC. #define _M_I86 // Assume that Borland ONLY targets 80X86 processors. #define _M_IX86 300 // Assume that Borland ONLY targets 80X86 processors. #ifdef _Windows #define _WINDOWS #endif #ifdef __WIN32__ #define _WIN32 #elif !defined(__LARGE__) #error "ERROR: Large memory model must be used for 16 bit compiles." #endif #ifdef __DLL__ #ifdef _WINDOWS #define _WINDLL #else #define _DLL #endif #endif #endif /* __BORLANDC__ */ /*=============================================================================================== ** Microsoft Resource Compiler */ #ifdef RC_INVOKED #define COMPILER "Resource Compiler" #define _WINDOWS #endif /* RC_INVOKED */ /*=============================================================================================== ** Add other compiler dependant code HERE! ** Treat everything else as gcc */ #ifndef COMPILER #define COMPILER "gcc" #include "unix.h" #endif //=============================================================================================== // // If compiler is unknown, abort with an error. // #ifndef COMPILER #error "Compiler not recognised... check AXODEFN.H" #endif //=============================================================================================== // AXOAPI should be used in the declaration of all cross platform API functions. // e.g. void AXOAPI ABF_Initialize(void); #ifdef _WINDOWS #define AXOAPI WINAPI #else #define AXOAPI PASCAL #endif //=============================================================================================== // MACRO: ELEMENTS_IN // PURPOSE: Returns the count of the elements in an array. // NOTES: *only* use this on an array. // Do not use this on a pointer or it will not return the correct value. // #ifndef ELEMENTS_IN #define ELEMENTS_IN(p) (sizeof(p)/sizeof((p)[0])) #endif //=============================================================================================== // // 16/32 bit compatibility #defines // #if defined(_WIN32) #ifndef __STF__ #define PLATFORM "Win32" #ifndef _WINDOWS #define _WINDOWS #endif #ifndef __MINGW32__ #include "..\common\win32.h" #endif #endif #elif defined(_DOS) #define PLATFORM "DOS" #include "..\common\msdos.h" #elif defined(_WINDOWS) #error "ERROR: WIN16 is not supported any more." #elif defined(__linux__) #define PLATFORM "Unix" #elif defined(__APPLE__) #define PLATFORM "Mac" #else // Treat everything else as Unix #define PLATFORM "Unix" #endif //======================================================================================= // Macros used to stringize an argument. // // Helper macro for the stringize macro. // Sometimes a nested call is necessary to get correct expansion by the preprocessor. #ifndef AX_STRINGIZE_HELPER #define AX_STRINGIZE_HELPER(a) #a #endif #ifndef AX_STRINGIZE #define AX_STRINGIZE(a) AX_STRINGIZE_HELPER(a) #endif // This macro formats the module and line number to prefix the message in the way that // MSVC likes so that you can simply double click on the line to go to the location. #ifndef AX_FILELINEMSG #define AX_FILELINEMSG(msg) __FILE__ "(" AX_STRINGIZE(__LINE__) ") : " msg #endif // Usage: // #pragma message( __FILE__ "(" AX_STRINGIZE(__LINE__) ") : warning - MFC version change.") // or // #pragma message( AX_FILELINEMSG("warning - MFC version change.") ) // //======================================================================================= // Macros to declare and use string constants based on a symbol. #if !defined(DECLARE_STR) && !defined(USE_STR) #define DECLARE_STR(Name) static const char s__sz##Name[] = #Name #define USE_STR(Name) s__sz##Name #endif #ifdef __cplusplus } #endif /* __cplusplus */ #endif /* __AXODEFN_H__ */ stimfit-0.13.13/src/libstfio/abf/axon/Common/unix.cpp0000775000175000017500000001673112275677732017334 00000000000000#include "../Common/axodefn.h" #include #include int WINAPI AXODBG_printf( char *lpsz, ... ) { printf("%s", lpsz); return 0; } /********************************************************************* * CloseW32Handle (KERNEL.474) * CloseHandle (KERNEL32.@) * * Closes a handle. * * PARAMS * handle [I] Handle to close. * * RETURNS * Success: TRUE. * Failure: FALSE, check GetLastError(). */ BOOL WINAPI c_CloseHandle( FILEHANDLE handle ) { // returns the opposite of the Windows-function #if !defined(_WINDOWS) return (!fclose(handle)); #else return CloseHandle( handle ); #endif } /*********************************************************************** * GetFileSize (KERNEL32.@) * * Retrieve the size of a file. * * PARAMS * hFile [I] File to retrieve size of. * filesizehigh [O] On return, the high bits of the file size. * * RETURNS * Success: The low bits of the file size. * Failure: INVALID_FILE_SIZE. As this is could also be a success value, * check GetLastError() for values other than ERROR_SUCCESS. */ DWORD WINAPI c_GetFileSize( FILEHANDLE hFile, LPDWORD filesizehigh ) { #if !defined(_WINDOWS) long lSize; fpos_t cur; if (fgetpos(hFile,&cur)!=0) return -1; if (fseek (hFile, 0, SEEK_END)!=0) return -1; lSize=ftell (hFile); if (fsetpos(hFile,&cur)!=0) return -1; return lSize; #else return GetFileSize( hFile, filesizehigh ); #endif } /*********************************************************************** * ReadFile (KERNEL32.@) */ BOOL WINAPI c_ReadFile( FILEHANDLE hFile, LPVOID buffer, DWORD bytesToRead, LPDWORD bytesRead, LPOVERLAPPED overlapped ) { #if !defined(_WINDOWS) *bytesRead=(DWORD)fread(buffer,1,bytesToRead,hFile); if ( *bytesRead != bytesToRead) return FALSE; else return TRUE; #else return ReadFile( hFile, buffer, bytesToRead, bytesRead, overlapped ); #endif } /*********************************************************************** * SetFilePointer (KERNEL32.@) */ DWORD WINAPI c_SetFilePointer( FILEHANDLE hFile, LONG distance, LONG *highword, DWORD method ) { #if !defined(_WINDOWS) /*long res;*/ short origin = 0; switch (method) { case FILE_BEGIN : origin = SEEK_SET; /* start of file */ break; case FILE_CURRENT : origin = SEEK_CUR; /* current position of file pointer */ break; case FILE_END : origin = SEEK_END; /* end of file */ break; } /* res = */ fseek (hFile, distance, origin); /* stdio read */ return (DWORD) ftell(hFile); #else return SetFilePointer( hFile, distance, highword, method ); #endif } #if !defined(_WINDOWS) /********************************************************************* * _splitpath (NTDLL.@) * * Split a path into its component pieces. * * PARAMS * inpath [I] Path to split * drv [O] Destination for drive component (e.g. "A:"). Must be at least 3 characters. * dir [O] Destination for directory component. Should be at least MAX_PATH characters. * fname [O] Destination for File name component. Should be at least MAX_PATH characters. * ext [O] Destination for file extension component. Should be at least MAX_PATH characters. * * RETURNS * Nothing. */ void /*CSH __cdecl */ _splitpath(const char* inpath, char * drv, char * dir, char* fname, char * ext ) { const char *p, *end; if (inpath[0] && inpath[1] == ':') { if (drv) { drv[0] = inpath[0]; drv[1] = inpath[1]; drv[2] = 0; } inpath += 2; } else if (drv) drv[0] = 0; /* look for end of directory part */ end = NULL; for (p = inpath; *p; p++) if (*p == '/' || *p == '\\') end = p + 1; if (end) /* got a directory */ { if (dir) { memcpy( dir, inpath, end - inpath ); dir[end - inpath] = 0; } inpath = end; } else if (dir) dir[0] = 0; /* look for extension: what's after the last dot */ end = NULL; for (p = inpath; *p; p++) if (*p == '.') end = p; if (!end) end = p; /* there's no extension */ if (fname) { memcpy( fname, inpath, end - inpath ); fname[end - inpath] = 0; } if (ext) strcpy( ext, end ); } /********************************************************************* * _strnicmp (NTDLL.@) */ int /*CSH __cdecl*/ _strnicmp( LPCSTR str1, LPCSTR str2, size_t n ) { return strncasecmp( str1, str2, n ); } /********************************************************************* * _makepath (MSVCRT.@) * * Create a pathname. * * PARAMS * path [O] Destination for created pathname * drive [I] Drive letter (e.g. "A:") * directory [I] Directory * filename [I] Name of the file, excluding extension * extension [I] File extension (e.g. ".TXT") * * RETURNS * Nothing. If path is not large enough to hold the resulting pathname, * random process memory will be overwritten. */ void cdecl _makepath(char * path, const char * drive, const char *directory, const char * filename, const char * extension) { char ch; // TRACE("(%s %s %s %s)\n", debugstr_a(drive), debugstr_a(directory), // debugstr_a(filename), debugstr_a(extension) ); if ( !path ) return; path[0] = '\0'; if (drive && drive[0]) { path[0] = drive[0]; path[1] = ':'; path[2] = 0; } if (directory && directory[0]) { strcat(path, directory); ch = path[strlen(path)-1]; if (ch != '/' && ch != '\\') strcat(path,"\\"); } if (filename && filename[0]) { strcat(path, filename); if (extension && extension[0]) { if ( extension[0] != '.' ) strcat(path,"."); strcat(path,extension); } } // TRACE("returning %s\n",path); } #endif /*********************************************************************** * WriteFile (KERNEL32.@) */ BOOL WINAPI c_WriteFile( FILEHANDLE hFile, LPCVOID buffer, DWORD bytesToWrite, LPDWORD bytesWritten, LPOVERLAPPED overlapped ) { #if !defined(_WINDOWS) *bytesWritten=(DWORD)fwrite(buffer, 1, bytesToWrite, hFile); return (*bytesWritten==bytesToWrite); #else return WriteFile( hFile, buffer, bytesToWrite, bytesWritten, overlapped ); #endif } /************************************************************************* * CreateFileA (KERNEL32.@) * * See CreateFileW. */ #if !defined(_WINDOWS) FILEHANDLE WINAPI c_CreateFile( LPCSTR filename, DWORD access, DWORD sharing, LPSECURITY_ATTRIBUTES sa, DWORD creation, DWORD attributes, HANDLE templ) { char fname[1024]; /* To get near variable holding string */ char* omode; switch (access) /* use C library constants to set mode */ { case GENERIC_WRITE: omode = (char*)"w"; break; case GENERIC_READ | GENERIC_WRITE: omode = (char*)"w+"; break; default: omode = (char*)"r"; break; } strncpy(fname, filename, 1024); /* Get filename in near var */ return fopen(fname,omode); } #endif stimfit-0.13.13/src/libstfio/abf/axon/Common/FileIO.cpp0000775000175000017500000004324312275677732017456 00000000000000//*********************************************************************************************** // // Copyright (c) 1993-1997 Axon Instruments. // All rights reserved. // Permission is granted to freely to use, modify and copy the code in this file. // //*********************************************************************************************** // // MODULE: FileIO.CPP // PURPOSE: Contains the member functions for the CFileIO class. // NOTES: // // Overlapped file I/O is not available in WIN95 -- PSS ID Number: Q125717 // Windows 95 does not support overlapped operations on files, disk, pipes, or // mail slots, but does support overlapped operations on serial and parallel // communication ports. Non-overlapped file write operations are similar to // overlapped file writes, because Windows 95 uses a lazy-write disk cache. // Overlapped I/O can be implemented in a Win32-based application by creating // multiple threads to handle I/O. // // Asynchronous I/O on files, disk, pipes and mail slots is not implemented in // Windows 95. If a Win32-based application running on Windows 95 attempts to // perform asynchronous file I/O (such as ReadFile() with any value other than // NULL in the lpOverlapped field) on any of these objects, the ReadFile() or // WriteFile fails and GetLastError() returns ERROR_INVALID_PARAMETER (87). // #include "wincpp.hpp" #include "FileIO.hpp" //=============================================================================================== // FUNCTION: Constructor // PURPOSE: Initialize the object // CFileIO::CFileIO() { //MEMBERASSERT(); m_hFileHandle = NULL; m_szFileName[0] = '\0'; m_dwLastError = 0; } //=============================================================================================== // FUNCTION: Copy Constructor // PURPOSE: Creates a CFileIO object from a Win32 HANDLE. // CFileIO::CFileIO(FILEHANDLE hFile) { //MEMBERASSERT(); m_hFileHandle = hFile; m_szFileName[0] = '\0'; m_dwLastError = 0; } #if !defined(_WINDOWS) CFileIO::CFileIO(HANDLE hFile) { //MEMBERASSERT(); m_hFileHandle = (FILEHANDLE)hFile; m_szFileName[0] = '\0'; m_dwLastError = 0; } #endif //=============================================================================================== // FUNCTION: Destructor // PURPOSE: Cleanup the object when it is deleted. // CFileIO::~CFileIO() { //MEMBERASSERT(); Close(); } //=============================================================================================== // FUNCTION: Create // PURPOSE: Opens a file and stores the filename if successful. // BOOL CFileIO::Create(LPCTSTR szFileName, BOOL bReadOnly, DWORD dwAttributes) { //MEMBERASSERT(); //LPSZASSERT(szFileName); ASSERT(m_hFileHandle == FILE_NULL); DWORD dwFlags = GENERIC_READ; DWORD dwCreation = OPEN_EXISTING; if (!bReadOnly) { dwFlags |= GENERIC_WRITE; dwCreation = CREATE_ALWAYS; } return CreateEx(szFileName, dwFlags, FILE_SHARE_READ, dwCreation, dwAttributes); } //=============================================================================================== // FUNCTION: CreateEx // PURPOSE: Opens a file and stores the filename if successful. // BOOL CFileIO::CreateEx(LPCTSTR szFileName, DWORD dwDesiredAccess, DWORD dwShareMode, DWORD dwCreationDisposition, DWORD dwFlagsAndAttributes) { //MEMBERASSERT(); //LPSZASSERT(szFileName); ASSERT(m_hFileHandle == FILE_NULL); #if defined(_WINDOWS) m_hFileHandle = ::CreateFile(szFileName, dwDesiredAccess, dwShareMode, NULL, dwCreationDisposition, dwFlagsAndAttributes, NULL); #else int fnsize = 0; std::string fName; while (szFileName[fnsize++] != '\0') { fName += char(szFileName[fnsize-1]); } fName += '\0'; m_hFileHandle = ::c_CreateFile(fName.c_str(), dwDesiredAccess, dwShareMode, NULL, dwCreationDisposition, dwFlagsAndAttributes, NULL); #endif if (m_hFileHandle == FILE_NULL) return SetLastError(); #if defined(_WINDOWS) && !defined(__MINGW32__) // TRACE1("Create(%s)\n", szFileName); wcsncpy(m_szFileName, szFileName, _MAX_PATH-1); m_szFileName[_MAX_PATH-1] = '\0'; #endif return TRUE; } //=============================================================================================== // FUNCTION: SetFileHandle // PURPOSE: Initializes the object from a Win32 HANDLE. // void CFileIO::SetFileHandle(FILEHANDLE hFile) { //MEMBERASSERT(); ASSERT(m_hFileHandle == FILE_NULL); m_hFileHandle = hFile; m_szFileName[0] = '\0'; m_dwLastError = 0; } /* //=============================================================================================== // FUNCTION: Write // PURPOSE: Write a buffer of data to the file. // BOOL CFileIO::Write(const void *pvBuffer, DWORD dwSizeInBytes, DWORD *pdwBytesWritten) { //MEMBERASSERT(); // ASSERT(m_hFileHandle != INVALID_HANDLE_VALUE); DWORD dwBytesWritten = 0; BOOL bRval = ::WriteFile(m_hFileHandle, pvBuffer, dwSizeInBytes, &dwBytesWritten, NULL); if (pdwBytesWritten) *pdwBytesWritten = dwBytesWritten; if (!bRval) SetLastError(); return bRval; } //=============================================================================================== // FUNCTION: Flush // PURPOSE: Flush the current file to disk. // BOOL CFileIO::Flush() { //MEMBERASSERT(); // ASSERT(m_hFileHandle != INVALID_HANDLE_VALUE); return ::FlushFileBuffers(m_hFileHandle) ? TRUE : SetLastError(); } */ //=============================================================================================== // PROCEDURE: Read // PURPOSE: Reads a block and returnd FALSE on ERROR. // BOOL CFileIO::Read(LPVOID lpBuf, DWORD dwBytesToRead, DWORD *pdwBytesRead) { //MEMBERASSERT(); ASSERT(m_hFileHandle != FILE_NULL); DWORD dwBytesRead = 0; #if defined(_WINDOWS) && !defined(__MINGW32__) BOOL bRval = ::ReadFile(m_hFileHandle, lpBuf, dwBytesToRead, &dwBytesRead, NULL); #else BOOL bRval = ::c_ReadFile(m_hFileHandle, lpBuf, dwBytesToRead, &dwBytesRead, NULL); #endif if (pdwBytesRead) *pdwBytesRead = dwBytesRead; if (!bRval) return SetLastError(); if (dwBytesRead!=dwBytesToRead) return SetLastError(ERROR_HANDLE_EOF); return TRUE; } //=============================================================================================== // FUNCTION: Close // PURPOSE: Closes a previously opened file. // BOOL CFileIO::Close() { //MEMBERASSERT(); if (m_hFileHandle != NULL) { #if defined(_WINDOWS) && !defined(__MINGW32__) if (!::CloseHandle(m_hFileHandle)) #else if (!c_CloseHandle(m_hFileHandle)) #endif return SetLastError(); // TRACE1("Close(%s)\n", m_szFileName); m_hFileHandle = NULL; } m_szFileName[0] = '\0'; return TRUE; } //=============================================================================================== // FUNCTION: Release // PURPOSE: Releases the file handle held in the object. // FILEHANDLE CFileIO::Release() { //MEMBERASSERT(); FILEHANDLE hRval = m_hFileHandle; m_hFileHandle = NULL; m_szFileName[0] = '\0'; return hRval; } //=============================================================================================== // FUNCTION: SeekFailure // PURPOSE: Returns TRUE if an open file handle is held. // BOOL CFileIO::SeekFailure(DWORD dwOffset) { //MEMBERASSERT(); if (dwOffset == 0xFFFFFFFF) { DWORD dwError = GetLastError(); if (dwError != NO_ERROR ) { SetLastError(dwError); return TRUE; } } return FALSE; } //=============================================================================================== // FUNCTION: Seek // PURPOSE: Change the current position of the file pointer. // NOTES: Valid flags are FILE_CURRENT, FILE_BEGIN, & FILE_END. // BOOL CFileIO::Seek(LONGLONG lOffset, UINT uFlag, LONGLONG *plNewOffset) { #if !defined(_WINDOWS) /*MEMBERASSERT();*/ short origin = 0; switch (uFlag) { case FILE_BEGIN : origin = SEEK_SET; /* start of file */ break; case FILE_CURRENT : origin = SEEK_CUR; /* current position of file pointer */ break; case FILE_END : origin = SEEK_END; /* end of file */ break; } return (!fseek (m_hFileHandle, (long)lOffset, origin)); /* stdio read */ #else MEMBERASSERT(); LARGE_INTEGER Offset; Offset.QuadPart = lOffset; Offset.LowPart = ::SetFilePointer(m_hFileHandle, Offset.LowPart, &Offset.HighPart, uFlag); if (SeekFailure(Offset.LowPart)) return FALSE; if (plNewOffset) *plNewOffset = Offset.QuadPart; return TRUE; #endif } /* //=============================================================================================== // FUNCTION: GetCurrentPosition // PURPOSE: Get the current position of the file pointer. // BOOL CFileIO::GetCurrentPosition(LONGLONG *plCurrentPosition) { //MEMBERASSERT(); return Seek(0, FILE_CURRENT, plCurrentPosition); } */ //=============================================================================================== // FUNCTION: GetFileSize // PURPOSE: Returns the size of a file in bytes. // LONGLONG CFileIO::GetFileSize() { /*MEMBERASSERT();*/ ASSERT(m_hFileHandle != FILE_NULL); #if !defined(_WINDOWS) || defined(__MINGW32__) return c_GetFileSize(m_hFileHandle,NULL); #else return ::GetFileSize(m_hFileHandle,NULL); #endif } /* //=============================================================================================== // FUNCTION: GetFileTime // PURPOSE: Gets time values for the file. // BOOL CFileIO::GetFileTime( LPFILETIME pCreationTime, LPFILETIME pLastAccessTime, LPFILETIME pLastWriteTime) { //MEMBERASSERT(); //ASSERT(m_hFileHandle != INVALID_HANDLE_VALUE); return ::GetFileTime(m_hFileHandle, pCreationTime, pLastAccessTime, pLastWriteTime); } //=============================================================================================== // FUNCTION: SetFileTime // PURPOSE: Sets time values for the file. // BOOL CFileIO::SetFileTime( LPFILETIME pCreationTime, LPFILETIME pLastAccessTime, LPFILETIME pLastWriteTime) { //MEMBERASSERT(); //ASSERT(m_hFileHandle != INVALID_HANDLE_VALUE); return ::SetFileTime(m_hFileHandle, pCreationTime, pLastAccessTime, pLastWriteTime); } //=============================================================================================== // FUNCTION: GetFileInformation // PURPOSE: . // BOOL CFileIO::GetFileInformation(LPBY_HANDLE_FILE_INFORMATION pFileInformation) { //MEMBERASSERT(); return ::GetFileInformationByHandle(m_hFileHandle, pFileInformation) ? TRUE : SetLastError(); } //=============================================================================================== // FUNCTION: Duplicate // PURPOSE: Makes a copy of the handle into another CFileIO object. // BOOL CFileIO::Duplicate(CFileIO *pNewFile, BOOL bInheritable) { //MEMBERASSERT(); HANDLE hNewHandle = NULL; HANDLE *pNewHandle = NULL; if (pNewFile) { // WPTRASSERT(pNewFile); pNewHandle = &hNewHandle; } if (!DuplicateHandle(GetCurrentProcess(), // source process m_hFileHandle, // handle to duplicate GetCurrentProcess(), // destination process pNewHandle, // new handle 0, // new access flags - ignored since DUPLICATE_SAME_ACCESS bInheritable, // it's inheritable DUPLICATE_SAME_ACCESS)) return SetLastError(); if (pNewFile) pNewFile->SetFileHandle(hNewHandle); return TRUE; } //=============================================================================================== // FUNCTION: SetInheritable // PURPOSE: Sets the "inheritability" of the file handle. // BOOL CFileIO::SetInheritable(BOOL bInheritable) { //MEMBERASSERT(); return Duplicate(NULL, bInheritable); } */ //=============================================================================================== // FUNCTION: SetLastError // PURPOSE: Sets the last error value and always returns FALSE for convenience. // BOOL CFileIO::SetLastError() { /*MEMBERASSERT();*/ return SetLastError(GetLastError()); } //=============================================================================================== // FUNCTION: SetLastError // PURPOSE: Sets the last error value and always returns FALSE for convenience. // BOOL CFileIO::SetLastError(DWORD dwError) { /*MEMBERASSERT();*/ m_dwLastError = dwError; // TRACE1("CFileIO::SetLastError(%u)\n", dwError); // SHOW_SYSTEM_ERROR(dwError); return FALSE; // convenience. } //=============================================================================================== // FUNCTION: GetLastError // PURPOSE: Gets the last error condition provoked by this object. // DWORD CFileIO::GetLastError() const { /*MEMBERASSERT();*/ return m_dwLastError; } //############################################################################################### //############################################################################################### //### //### CFileIO_NoClose is a non-polymorphic derivation of CFileIO that does not close the //### file on destruction. Typically used with the copy constructor to wrap a HANDLE. //### //############################################################################################### //############################################################################################### //=============================================================================================== // FUNCTION: Constructor // PURPOSE: Object initialization. // CFileIO_NoClose::CFileIO_NoClose(HANDLE hFile) : CFileIO(hFile) { } //=============================================================================================== // FUNCTION: Destructor // PURPOSE: Object cleanup. // CFileIO_NoClose::~CFileIO_NoClose() { Release(); } #if 0 //############################################################################################### //############################################################################################### //### //### CFileIO_Pipe is a thin wrapper around a Win32 pipe. //### //############################################################################################### //############################################################################################### CFileIO_Pipe::CFileIO_Pipe() { } CFileIO_Pipe::~CFileIO_Pipe() { } BOOL CFileIO_Pipe::Create(BOOL bInheritable) { // set up the security attributes for the anonymous pipe SECURITY_ATTRIBUTES saPipe = { 0 }; saPipe.nLength = sizeof(SECURITY_ATTRIBUTES); saPipe.lpSecurityDescriptor = NULL; saPipe.bInheritHandle = bInheritable; // handles to the anonymous pipe HANDLE hReadPipe=NULL, hWritePipe=NULL; // create the anonymous pipe if (!CreatePipe(&hReadPipe, &hWritePipe, &saPipe, 0)) { SHOW_SYSTEM_ERROR(0); return FALSE; } m_ReadPipe.SetFileHandle(hReadPipe); m_WritePipe.SetFileHandle(hWritePipe); return TRUE; } CFileIO *CFileIO_Pipe::GetReadPipe() { //MEMBERASSERT(); return &m_ReadPipe; } CFileIO *CFileIO_Pipe::GetWritePipe() { //MEMBERASSERT(); return &m_WritePipe; } #ifdef TESTBED #define WRITETEST 1 #define READTEST 1 int main(int argc, char **argv) { const char szFilename[] = "D:\\Bigfile.tmp"; const LONGLONG llFileLen = LONGLONG(1024 * 1024 * 1024) * 3; const char szWriteText[] = "Bruce's big file writing test."; const int nTextLen = strlen(szWriteText); #if WRITETEST { CFileIO File; //VERIFY(File.Create(szFilename, FALSE)); LONGLONG llOffset = 0; // VERIFY(File.Seek(llFileLen, FILE_BEGIN, &llOffset)); // ASSERT(llOffset == llFileLen); printf("llOffset = %d MB\n", int(llOffset / (1024 * 1024))); //VERIFY(File.Write(szWriteText, nTextLen)); LONGLONG llFileSize = File.GetFileSize(); // ASSERT(llFileSize > 0); // ASSERT(llFileSize == llFileLen + nTextLen); printf("llFileSize = %d MB\n", int(llFileSize / (1024 * 1024))); // VERIFY(File.Seek(-nTextLen, FILE_CURRENT, &llOffset)); char szReadText[128] = ""; // VERIFY(File.Read(szReadText, nTextLen)); szReadText[nTextLen] = '\0'; // ASSERT(strcmp(szWriteText, szReadText)==0); printf("szReadText = %s\n", szReadText); // VERIFY(File.Close()); } #endif #if READTEST { CFileIO File; //VERIFY(File.Create(szFilename, TRUE)); LONGLONG llOffset = 0; //VERIFY(File.Seek(llFileLen, FILE_BEGIN, &llOffset)); printf("llOffset = %d MB\n", int(llOffset / (1024 * 1024))); LONGLONG llFileSize = File.GetFileSize(); ASSERT(llFileSize > 0); ASSERT(llFileSize == llFileLen + nTextLen); printf("llFileSize = %d MB\n", int(llFileSize / (1024 * 1024))); char szReadText[128] = ""; //VERIFY(File.Read(szReadText, nTextLen)); szReadText[nTextLen] = '\0'; ASSERT(strcmp(szWriteText, szReadText)==0); printf("szReadText = %s\n", szReadText); //VERIFY(File.Close()); } #endif return 0; } #endif // TESTBED #endif stimfit-0.13.13/src/libstfio/abf/axon/AxAbfFio32/0000775000175000017500000000000012275713011016223 500000000000000stimfit-0.13.13/src/libstfio/abf/axon/AxAbfFio32/abfheadr.cpp0000775000175000017500000016373412275677732020447 00000000000000//*********************************************************************************************** // // Copyright (c) 1993-2000 Axon Instruments. // All rights reserved. // Permission is granted to freely to use, modify and copy the code in this file. // //*********************************************************************************************** // This is ABFHEADR.CPP; the routines that cope with reading the data file // parameters block for all AXON pCLAMP binary file formats. // // An ANSI C compiler should be used for compilation. // Compile with the large memory model option. // (e.g. CL -c -AL ABFHEADR.C) #include "../Common/wincpp.hpp" #include "abfheadr.h" // header definition & constants #include "oldheadr.h" // old header conversion prototypes #include "abfutil.h" // Large memory allocation/free /* #include "StringResource.h" // Access to string resources. */ #define A_VERY_SMALL_NUMBER 1E-10 #define DEFAULT_LEVEL_HYSTERESIS 64 // Two LSBits of level hysteresis. #define DEFAULT_TIME_HYSTERESIS 1 // Two sequences of time hysteresis. #if !defined(_WINDOWS) || defined(__MINGW32__) || defined(__STF__) #define max(a,b) (((a) > (b)) ? (a) : (b)) #define min(a,b) (((a) < (b)) ? (a) : (b)) #endif const char c_szValidOperators[] = "+-*/"; const ABFLONG c_lMaxShort = 30000; //----------------------------------------------------------------------------------------------- // Uncomment the following line to display interface structure sizes. //#define SHOW_STRUCT_SIZES 1 //----------------------------------------------------------------------------------------------- // Macros and functions to deal with returning error return codes through a pointer if given. #define ERRORRETURN(p, e) return ErrorReturn(p, e); static BOOL ErrorReturn(int *pnError, int nErrorNum) { if (pnError) *pnError = nErrorNum; return FALSE; } //=============================================================================================== // FUNCTION: ABFH_Initialize // PURPOSE: Initialize an ABFFileHeader structure to a consistent set of parameters // void WINAPI ABFH_Initialize( ABFFileHeader *pFH ) { // ABFH_WASSERT(pFH); int i; ABFFileHeader NewFH; ABFH_PromoteHeader( &NewFH, pFH ); // Zero fill all to start with. memset(&NewFH, '\0', sizeof(NewFH)); // Blank fill all strings. ABF_BLANK_FILL(NewFH._sParamValueList); ABF_BLANK_FILL(NewFH.sADCChannelName); ABF_BLANK_FILL(NewFH.sADCUnits); ABF_BLANK_FILL(NewFH.sDACChannelName); ABF_BLANK_FILL(NewFH.sDACChannelUnits); ABF_BLANK_FILL(NewFH.sDACFilePath[0]); ABF_BLANK_FILL(NewFH.sDACFilePath[1]); ABF_SET_STRING(NewFH.sArithmeticOperator, "+"); ABF_BLANK_FILL(NewFH.sArithmeticUnits); NewFH.lFileSignature = ABF_NATIVESIGNATURE; NewFH.fFileVersionNumber = ABF_CURRENTVERSION; NewFH.fHeaderVersionNumber = ABF_CURRENTVERSION; NewFH.nOperationMode = ABF_GAPFREEFILE; NewFH.nADCNumChannels = 1; NewFH.fADCSampleInterval = 100.0F; NewFH.lNumSamplesPerEpisode = 512; NewFH.lEpisodesPerRun = 1; NewFH.lDataSectionPtr = sizeof(ABFFileHeader) / ABF_BLOCKSIZE; NewFH.nDrawingStrategy = ABF_DRAW_REALTIME; NewFH.nTiledDisplay = ABF_DISPLAY_TILED; NewFH.nEraseStrategy = 1; NewFH.nDataDisplayMode = ABF_DRAW_LINES; NewFH.nMultiColor = TRUE; NewFH.nFileType = ABF_ABFFILE; NewFH.nAutoTriggerStrategy = 1; // Allow auto triggering. NewFH.nChannelStatsStrategy = 0; // Don't calculate channel statistics. NewFH.fStatisticsPeriod = 1.0F; NewFH.lCalculationPeriod = ABFLONG(NewFH.fStatisticsPeriod / NewFH.fADCSampleInterval * 1E3F); NewFH.lStatisticsMeasurements = ABF_STATISTICS_ABOVETHRESHOLD | ABF_STATISTICS_MEANOPENTIME; NewFH.lSamplesPerTrace = 16384; NewFH.lPreTriggerSamples = 16; // default to 16 NewFH.fADCRange = 10.24F; NewFH.fDACRange = 10.24F; NewFH.lADCResolution = 32768L; NewFH.lDACResolution = 32768L; NewFH.nExperimentType = ABF_SIMPLEACQUISITION; ABF_BLANK_FILL(NewFH.sCreatorInfo); ABF_BLANK_FILL(NewFH.sModifierInfo); ABF_BLANK_FILL(NewFH.sFileComment); // ADC channel data for (i=0; inOperationMode) { case ABF_FIXLENEVENTS: case ABF_VARLENEVENTS: case ABF_GAPFREEFILE: return ABF_CONTINUOUSMODE; case ABF_HIGHSPEEDOSC: case ABF_WAVEFORMFILE: return ABF_EPISODICMODE; default: ERRORMSG1("Unexpected operation mode '%d'.", pFH->nOperationMode); return ABF_EPISODICMODE; } } //=============================================================================================== // FUNCTION: SetupSignal // PURPOSE: Sets up a signal descriptor from display parameters in an old ABF header. // static void _SetupSignal(const ABFFileHeader *pFH, ABFSignal *pS, UINT uMxOffset, UINT uTraces) { memset(pS, 0, sizeof(ABFSignal)); int nChannel = pFH->nADCSamplingSeq[uMxOffset]; ABFU_GetABFString(pS->szName, ABF_ADCNAMELEN+1, pFH->sADCChannelName[nChannel], ABF_ADCNAMELEN); pS->nMxOffset = short(uMxOffset); pS->rgbColor = RGB_BLUE; pS->nPenWidth = 1; pS->bDrawPoints = char(!pFH->nDataDisplayMode); pS->bHidden = FALSE; pS->bFloatData = FALSE; pS->fVertProportion = 1.0F / float(uTraces); pS->fDisplayGain = pFH->fADCDisplayAmplification[nChannel]; pS->fDisplayOffset = pFH->fADCDisplayOffset[nChannel]; } //=============================================================================================== // FUNCTION: SetupMathSignal // PURPOSE: Sets up a signal descriptor for a math channel from parameters in an ABF header. // static void _SetupMathSignal(const ABFFileHeader *pFH, ABFSignal *pS, UINT uTraces) { memset(pS, 0, sizeof(ABFSignal)); LoadString(g_hInstance, IDS_MATHCHANNEL, pS->szName, sizeof(pS->szName)); pS->nMxOffset = 0; pS->rgbColor = RGB_BLUE; pS->nPenWidth = 1; pS->bDrawPoints = char(!pFH->nDataDisplayMode); pS->bHidden = FALSE; pS->bFloatData = TRUE; pS->fVertProportion = 1.0F / float(uTraces); pS->fDisplayGain = 1.0F; pS->fDisplayOffset = 0.0F; } //=============================================================================================== // FUNCTION: MathChannelEnabled // PURPOSE: Returns TRUE if the math channel is enabled. // static BOOL MathChannelEnabled(const ABFFileHeader *pFH) { return (pFH->nArithmeticEnable && (pFH->nADCNumChannels < ABF_ADCCOUNT)); } //=============================================================================================== // FUNCTION: _GetTraceCount // PURPOSE: Gets the number of traces that should be displayed for this acquisition. // static UINT _GetTraceCount(const ABFFileHeader *pFH, BOOL *pbMathChannel=NULL) { UINT uTraces = UINT(pFH->nADCNumChannels); BOOL bMathChannel = MathChannelEnabled(pFH); if (bMathChannel) uTraces++; if (pbMathChannel) *pbMathChannel = bMathChannel; return uTraces; } //=============================================================================================== // FUNCTION: ABFH_InitializeScopeConfig // PURPOSE: Sets up a scope configuration structure from the old header locations for display // parameters. // void WINAPI ABFH_InitializeScopeConfig(const ABFFileHeader *pFH, ABFScopeConfig *pCfg) { // Zapp everything! memset(pCfg, 0, sizeof(*pCfg)); // Enable SC_CLIPPING pCfg->dwFlags = 0x00000008; // Set the scope mode. pCfg->wScopeMode = _GetDefaultScopeMode(pFH); // Set up the first ScopeConfig structure. pCfg->rgbColor[ABF_BACKGROUNDCOLOR] = RGB_WHITE; pCfg->rgbColor[ABF_GRIDCOLOR] = RGB_LTGRAY; pCfg->rgbColor[ABF_THRESHOLDCOLOR] = RGB_DKRED; pCfg->rgbColor[ABF_EVENTMARKERCOLOR]= RGB_RED; pCfg->rgbColor[ABF_SEPARATORCOLOR] = RGB_BLACK; pCfg->rgbColor[ABF_AVERAGECOLOR] = RGB_RED; pCfg->rgbColor[ABF_OLDDATACOLOR] = RGB_LTGRAY; pCfg->rgbColor[ABF_TEXTCOLOR] = RGB_BLACK; pCfg->rgbColor[ABF_AXISCOLOR] = GetSysColor(COLOR_3DFACE); pCfg->rgbColor[ABF_ACTIVEAXISCOLOR] = GetSysColor(COLOR_3DSHADOW); pCfg->fDisplayStart = 0.0F; // If fDisplayStart==fDisplayEnd a default pCfg->fDisplayEnd = 0.0F; // display scaling will be used. pCfg->nYAxisWidth = -1; pCfg->nEraseStrategy = ABF_ERASE_EACHRUN; // Set the Signals in the first scope configuration to match the // old entries in the header. BOOL bMathChannel = FALSE; UINT uTraces = _GetTraceCount(pFH, &bMathChannel); UINT uNormalTraces = uTraces; if (bMathChannel) uNormalTraces--; UINT i; for (i=0; iTraceList+i, i, uTraces); if (bMathChannel) _SetupMathSignal(pFH, pCfg->TraceList+i, uTraces); pCfg->nTraceCount = short(uTraces); // Initialize the extended ABFScopeConfig fields for ABF file version 1.68. pCfg->nAutoZeroState = 0; pCfg->nSizeofOldStructure = pCfg->nSizeofOldStructure; pCfg->rgbColorEx[ ABF_STATISTICS_REGION0 ] = RGB_BLACK; pCfg->rgbColorEx[ ABF_STATISTICS_REGION1 ] = RGB_DKRED; pCfg->rgbColorEx[ ABF_STATISTICS_REGION2 ] = RGB_DKGREEN; pCfg->rgbColorEx[ ABF_STATISTICS_REGION3 ] = RGB_DKYELLOW; pCfg->rgbColorEx[ ABF_STATISTICS_REGION4 ] = RGB_DKBLUE; pCfg->rgbColorEx[ ABF_STATISTICS_REGION5 ] = RGB_MAUVE; pCfg->rgbColorEx[ ABF_STATISTICS_REGION6 ] = RGB_BLUEGRAY; pCfg->rgbColorEx[ ABF_STATISTICS_REGION7 ] = RGB_DKGRAY; pCfg->rgbColorEx[ ABF_BASELINE_REGION ] = RGB_RED; pCfg->rgbColorEx[ ABF_STOREDSWEEPCOLOR ] = RGB_BLUEGRAY; } //=============================================================================================== // FUNCTION: SetMxOffset // PURPOSE: Returns TRUE if the passed signal is still in the sampling sequence. // static BOOL SetMxOffset(const ABFFileHeader *pFH, ABFSignal *pS) { // Initialize to failure case. pS->nMxOffset = -1; if (!pS->bFloatData) { char szName[ABF_ADCNAMELEN+1]; for (int i=0; inADCNumChannels); i++) { int nChannel = pFH->nADCSamplingSeq[i]; ABFU_GetABFString(szName, sizeof(szName), pFH->sADCChannelName[nChannel], ABF_ADCNAMELEN); if (strcmp(pS->szName, szName)==0) { pS->nMxOffset = short(i); break; } } } else if (MathChannelEnabled(pFH)) pS->nMxOffset = 0; return (pS->nMxOffset != -1); } //=============================================================================================== // FUNCTION: ABFH_CheckScopeConfig // PURPOSE: Checks a scope configuration structure against an ABFFileHeader structure, making // sure that both reference the same signals, in the same multiplex sequence. // RETURNS: FALSE if the configuration structure specified an innappropriate Scope mode. // BOOL WINAPI ABFH_CheckScopeConfig(ABFFileHeader *pFH, ABFScopeConfig *pCfg) { ASSERT(pFH->nADCNumChannels > 0); // Search through the ABFScopeConfig trace list to see if all signals are // included in the sampling list. BOOL bMathChannel = FALSE; UINT uNewTraceCount = _GetTraceCount(pFH, &bMathChannel); UINT uOldTraceCount = UINT(pCfg->nTraceCount); UINT uOldVisibleTraceCount = uOldTraceCount; UINT uGaps = 0; ABFSignal *pS = pCfg->TraceList; for (UINT i=0; i